Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G42830 578 / 0 HXXXD-type acyl-transferase family protein (.1) AT5G07850 528 / 0 HXXXD-type acyl-transferase family protein (.1) AT5G07870 493 / 8e-173 HXXXD-type acyl-transferase family protein (.1) AT5G07860 490 / 6e-172 HXXXD-type acyl-transferase family protein (.1) AT2G39980 330 / 1e-108 HXXXD-type acyl-transferase family protein (.1) AT5G01210 309 / 1e-100 HXXXD-type acyl-transferase family protein (.1) AT5G67150 303 / 9e-99 HXXXD-type acyl-transferase family protein (.1) AT3G50270 259 / 1e-81 HXXXD-type acyl-transferase family protein (.1) AT3G50280 254 / 1e-79 HXXXD-type acyl-transferase family protein (.1) AT3G50300 250 / 4e-78 HXXXD-type acyl-transferase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G025600 [exp] 901 / 0 AT5G42830 565 / 0.0 HXXXD-type acyl-transferase family protein (.1) Potri.014G025500 [exp] 882 / 0 AT5G42830 576 / 0.0 HXXXD-type acyl-transferase family protein (.1) Potri.008G065000 [exp] 326 / 4e-107 AT2G39980 705 / 0.0 HXXXD-type acyl-transferase family protein (.1) Potri.003G057100 [exp] 322 / 3e-106 AT3G50280 303 / 4e-99 HXXXD-type acyl-transferase family protein (.1) Potri.010G192400 [exp] 323 / 5e-106 AT2G39980 708 / 0.0 HXXXD-type acyl-transferase family protein (.1) Potri.003G057001 [exp] 320 / 2e-105 AT5G67150 275 / 3e-88 HXXXD-type acyl-transferase family protein (.1) Potri.016G112400 [exp] 319 / 2e-104 AT5G01210 614 / 0.0 HXXXD-type acyl-transferase family protein (.1) Potri.006G097500 [exp] 318 / 4e-104 AT5G01210 633 / 0.0 HXXXD-type acyl-transferase family protein (.1) Potri.003G057200 [exp] 315 / 3e-103 AT5G67150 297 / 1e-96 HXXXD-type acyl-transferase family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10024809 [exp] 503 / 1e-176 AT5G42830 442 / 8e-153 HXXXD-type acyl-transferase family protein (.1) Lus10040222 [exp] 311 / 3e-101 AT2G39980 633 / 0.0 HXXXD-type acyl-transferase family protein (.1) Lus10028267 [exp] 304 / 1e-98 AT2G39980 631 / 0.0 HXXXD-type acyl-transferase family protein (.1) Lus10035519 [exp] 248 / 9e-78 AT5G01210 520 / 0.0 HXXXD-type acyl-transferase family protein (.1) Lus10041591 [exp] 249 / 4e-77 AT5G67150 347 / 2e-115 HXXXD-type acyl-transferase family protein (.1) Lus10031148 [exp] 246 / 3e-76 AT5G67150 284 / 5e-91 HXXXD-type acyl-transferase family protein (.1) Lus10031149 [exp] 242 / 7e-75 AT3G50280 305 / 3e-99 HXXXD-type acyl-transferase family protein (.1) Lus10027500 [exp] 195 / 6e-57 AT5G23940 571 / 0.0 PERMEABLE LEAVES3, EMBRYO DEFECTIVE 3009, DEFECTIVE IN CUTICULAR RIDGES, HXXXD-type acyl-transferase family protein (.1) Lus10039256 [exp] 195 / 1e-56 AT5G23940 576 / 0.0 PERMEABLE LEAVES3, EMBRYO DEFECTIVE 3009, DEFECTIVE IN CUTICULAR RIDGES, HXXXD-type acyl-transferase family protein (.1) Lus10027779 [exp] 172 / 5e-50 AT5G01210 350 / 7e-119 HXXXD-type acyl-transferase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0149 [poplar] [flax] CoA-acyltrans PF02458 [poplar] [flax] Transferase Transferase family
Representative CDS sequence Show only first row Show all	>Potri.014G025550.1 pacid=42764003 polypeptide=Potri.014G025550.1.p locus=Potri.014G025550 ID=Potri.014G025550.1.v4.1 annot-version=v4.1 ATGAATCCCACTACTGTCAAACACATCACAGAGTGCTTTCTCAAGCCCAAACACATCGTAGAGGAAGCAAAACAGCCTTATTATTTGTCACCATGGGATC TTGCTATGCTTTCTTCTCACTATATTCAAAAGGGACTTCTCTTTGCCAAACCACCACAAACAGAAAATCAACTGGGCTTCAAGATCATGGATTTCCTGGA AGATCTCAAGCAGTCCCTCTCTCTCACTCTTGTTTATTTCTACCCGCTAGCCGGACGCCTTGCAACATCAAAGAGTGAGAACCCACCTTCCTACGTGGTC TTCGTGGACTGCAATAACAGTCCAGGAGCTAGATTTACCTATGCAACCGTTGACCTCACTGCATCAGATGTTCTTTCACCTACTTATGTGCCATTGGTTG TTCAGTCATTCTTCGACCATGATAGAGCCCTCAACCATGATGGTCACACCAAATCTTTGCTGACAATTCAAGTGACAGAGCTAATTGATGGCATCTTCAT CGGATGTTCCGTTAATCACAGTATCGTTGATGGATCCTCTTTCTGGCATTTCTTTAATATGTGGTCTGAAATCTTTCAAGGGAAAGGAAATGATGTCTCC ATCTCGCGCCCACCTGTTCTCAACCGCTGGTTTCCTGATGGTCATGGTCCAGCACTGAGTCTTCCTTTCACCCACCATGACCAATTCTTAAGACCGTTTG AAGCACCTTTACTAAAGGAAAGGATGTTTCACTTCTCATCAGAATCAATTGCAAGACTCAAAGCAAAAGCCAACGCAGAGTTCAACACCAACAAGATTTC ATCTTTCCAGTCCCTGTCTGCTCTTGTTTGGAGATGCATAACACGCGCACGCAATCTACCTCGTGATCGAGTAACCTGTTGCAGATTGGCTACCAATAAT CGGTCAAGATTGAATCCACCATTATCTCCTGACTATTTTGGAAACTCAATTCAGGCACTGAGAGCTGGGGTTGCCACAGCAGGTGAGGTGCTGGAACAGA ATCTTGGATGGGCAGCATGGCAATTGCATCAAGCTGTGGGGAACCACAGTGATGAAAAGGCGAGGGAATTTCTCAACTTCTGGCTAAAGTCTCCTTTTAT TTACCAGATAGGCAAGTTGTTTGATCCGCATACTGTGATAATGGGGAGCTCACCAAGATTCAACAAGTATGGGAATGAATTTGGACTGGGGAAGGCTTTG GCACTTCGCAGTGGATATGCACATAAGTTCAGCGGGAAAGCATCAGCTTATCCTGGACATGAAGGTGGAGGAAGTATAGACTTGGAGATTTGCCTCTCCC CTGATGAAATGACTGCTATTGAATCTGATAAGGAATTCATGGATGTTGTCTCTCCATCTCCTTGTTAA
AA sequence Show only first row Show all	>Potri.014G025550.1 pacid=42764003 polypeptide=Potri.014G025550.1.p locus=Potri.014G025550 ID=Potri.014G025550.1.v4.1 annot-version=v4.1 MNPTTVKHITECFLKPKHIVEEAKQPYYLSPWDLAMLSSHYIQKGLLFAKPPQTENQLGFKIMDFLEDLKQSLSLTLVYFYPLAGRLATSKSENPPSYVV FVDCNNSPGARFTYATVDLTASDVLSPTYVPLVVQSFFDHDRALNHDGHTKSLLTIQVTELIDGIFIGCSVNHSIVDGSSFWHFFNMWSEIFQGKGNDVS ISRPPVLNRWFPDGHGPALSLPFTHHDQFLRPFEAPLLKERMFHFSSESIARLKAKANAEFNTNKISSFQSLSALVWRCITRARNLPRDRVTCCRLATNN RSRLNPPLSPDYFGNSIQALRAGVATAGEVLEQNLGWAAWQLHQAVGNHSDEKAREFLNFWLKSPFIYQIGKLFDPHTVIMGSSPRFNKYGNEFGLGKAL ALRSGYAHKFSGKASAYPGHEGGGSIDLEICLSPDEMTAIESDKEFMDVVSPSPC

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G42830			HXXXD-type acyl-transferase fa...		Potri.014G025550 [exp]	0	1
AT5G57700			BNR/Asp-box repeat family prot...		Potri.018G097100 [exp]	12.68	0.6595
AT3G55270		MKP1, ATMKP1	ARABIDOPSIS MITOGEN-ACTIVATED ...		Potri.008G049900 [exp]	13.67	0.7179	Pt-MKP1.2
AT3G61610			Galactose mutarotase-like supe...		Potri.001G095300 [exp]	19.36	0.6824
AT2G33400			unknown protein		Potri.008G170600 [exp]	32.83	0.5990
AT1G64940		CYP89A6	"cytochrome P450, family 87, s...		Potri.001G330501 [exp]	36.00	0.6508
AT3G43740			Leucine-rich repeat (LRR) fami...		Potri.009G090700 [exp]	38.88	0.6614
AT4G01250	WRKY	ATWRKY22, WRKY2...	WRKY family transcription fact...		Potri.014G090300 [exp]	39.19	0.6379	Pt-WRKY22.2
AT4G31550	WRKY	ATWRKY11, WRKY1...	WRKY DNA-binding protein 11 (....		Potri.018G139300 [exp]	78.70	0.5521
AT5G60900		RLK1	receptor-like protein kinase 1...		Potri.019G011750 [exp]	83.07	0.6173
AT3G12290			Amino acid dehydrogenase famil...		Potri.011G098600 [exp]	84.85	0.6240

Compare expression of checked genes

Potri.014G025550 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.