Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G42830 565 / 0 HXXXD-type acyl-transferase family protein (.1) AT5G07850 513 / 0 HXXXD-type acyl-transferase family protein (.1) AT5G07870 484 / 3e-169 HXXXD-type acyl-transferase family protein (.1) AT5G07860 477 / 1e-166 HXXXD-type acyl-transferase family protein (.1) AT2G39980 317 / 8e-104 HXXXD-type acyl-transferase family protein (.1) AT5G01210 300 / 3e-97 HXXXD-type acyl-transferase family protein (.1) AT5G67150 295 / 2e-95 HXXXD-type acyl-transferase family protein (.1) AT3G50280 247 / 3e-77 HXXXD-type acyl-transferase family protein (.1) AT3G50270 247 / 6e-77 HXXXD-type acyl-transferase family protein (.1) AT3G50300 243 / 2e-75 HXXXD-type acyl-transferase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G025550 [exp] 901 / 0 AT5G42830 579 / 0.0 HXXXD-type acyl-transferase family protein (.1) Potri.014G025500 [exp] 880 / 0 AT5G42830 576 / 0.0 HXXXD-type acyl-transferase family protein (.1) Potri.008G065000 [exp] 315 / 8e-103 AT2G39980 705 / 0.0 HXXXD-type acyl-transferase family protein (.1) Potri.006G097500 [exp] 313 / 5e-102 AT5G01210 633 / 0.0 HXXXD-type acyl-transferase family protein (.1) Potri.003G057100 [exp] 311 / 7e-102 AT3G50280 303 / 4e-99 HXXXD-type acyl-transferase family protein (.1) Potri.010G192400 [exp] 312 / 8e-102 AT2G39980 708 / 0.0 HXXXD-type acyl-transferase family protein (.1) Potri.003G057001 [exp] 310 / 1e-101 AT5G67150 275 / 3e-88 HXXXD-type acyl-transferase family protein (.1) Potri.016G112400 [exp] 310 / 6e-101 AT5G01210 614 / 0.0 HXXXD-type acyl-transferase family protein (.1) Potri.003G057200 [exp] 304 / 3e-99 AT5G67150 297 / 1e-96 HXXXD-type acyl-transferase family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10024809 [exp] 503 / 1e-176 AT5G42830 442 / 8e-153 HXXXD-type acyl-transferase family protein (.1) Lus10040222 [exp] 294 / 1e-94 AT2G39980 633 / 0.0 HXXXD-type acyl-transferase family protein (.1) Lus10028267 [exp] 290 / 3e-93 AT2G39980 631 / 0.0 HXXXD-type acyl-transferase family protein (.1) Lus10035519 [exp] 244 / 4e-76 AT5G01210 520 / 0.0 HXXXD-type acyl-transferase family protein (.1) Lus10031148 [exp] 240 / 6e-74 AT5G67150 284 / 5e-91 HXXXD-type acyl-transferase family protein (.1) Lus10041591 [exp] 233 / 4e-71 AT5G67150 347 / 2e-115 HXXXD-type acyl-transferase family protein (.1) Lus10031149 [exp] 232 / 4e-71 AT3G50280 305 / 3e-99 HXXXD-type acyl-transferase family protein (.1) Lus10039256 [exp] 184 / 1e-52 AT5G23940 576 / 0.0 PERMEABLE LEAVES3, EMBRYO DEFECTIVE 3009, DEFECTIVE IN CUTICULAR RIDGES, HXXXD-type acyl-transferase family protein (.1) Lus10027500 [exp] 181 / 1e-51 AT5G23940 571 / 0.0 PERMEABLE LEAVES3, EMBRYO DEFECTIVE 3009, DEFECTIVE IN CUTICULAR RIDGES, HXXXD-type acyl-transferase family protein (.1) Lus10027779 [exp] 169 / 7e-49 AT5G01210 350 / 7e-119 HXXXD-type acyl-transferase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0149 [poplar] [flax] CoA-acyltrans PF02458 [poplar] [flax] Transferase Transferase family
Representative CDS sequence Show only first row Show all	>Potri.014G025600.1 pacid=42762867 polypeptide=Potri.014G025600.1.p locus=Potri.014G025600 ID=Potri.014G025600.1.v4.1 annot-version=v4.1 ATGAATCCCACTACTGTCACACACATCTCAGAGTACTTTATCAAGCCCAAACACATCGTAGACGAAGCAACACAGCCTTATTATTTGGCACCATGGGAAC TTGCTATGCTTTCTTCTCACTATATTCAAAAGGGACTTCTCTTTGCCAAACCACCACAAACAGAAAATCAACTGGGCTTCAAGATCATGGATTTCTTGGA AGATCTCAAGCAGTCCCTCTCTCTCACTCTTGTTCATTTCTACCCGCTAGCCGGACGCCTTGCAACATCAAAGAGTGAGAACCCACCTTCCTACGTGGTC TTCGTGGACTGCAATAACAGTCCAGGAGCTAGATTTACCTATGCAACCGTTGACCTCACTGCATCAGATGTTCTTTCACCTACTTATGTGCCATTGGTTG TTCAGTCATTCTTCGACCATGATAGAGCCCTCAACCATGATGGTCACACCAAATCTTTGCTGACAATTCAAGTGACAGAGCTAATTGATGGCATCTTCAT CGGATGTTCCGTTAATCACAGTATCGTTGATGGATCCTCTTTCTGGCATTTCTTTAATATGTGGTCTGAAATCTTTCAAGGGAAAGGAGATGATGTCTCC ATCTCGCGCCCACCTGTTCTCAACCGCTGGTTTCCTGATGGTCATGGTCCAGCACTGAGTCTTCCTTTCACCCACCATGACCAATTCTTAAGACCGTTTG AAGCACCTTTACTCAAGGAAAGGATGTTTCACTTCTCATCAGAATCAATTGCAAGACTCAAAGCAAAAGCCAACGCAGAGTTCAACACCAACAAGATTTC ATCTTTCCAGTCTCTGTCTGCTCTTGTTTGGAGATGCATAACACGCGCACGCAATCTACCTCGTGATCAAGTAACCTGTTGCAGATTGGCTACCAATAAT CGGTCAAGATTGAATCCACCATTATCTCCTGACTACTTTGGATGCTCAATTCAGGCACTGAGAGCTGGGGTTTCCACAGCAGGTGAGGTGCTGGAGCAGA ATCTAGGATGGACAGCATGGCAATTGCATCAAGCTGTGGTGAGTCACGGTGATGAAAAGGCAAGGGAATTTCTCAACTTGTGGTTAAAGTCTCCGTTTAT TAACCATATAGGCAAGCTGTTTGATCCGCATAGTGTGATGATGGGGAGCTCGCCGAGATTCAACAAGTACGGGAATGAATTTGGGTTGGGCAAGGCTTTG GCACTTCGCAGTGGATATGCACTTAAGTTCAGTGGGAAAGCATCAGCCTATCCTGGACATGAAGGTGGAGGAAGTATAGAGTTGGAGATTTGCCTCTCCC CTGATGAAATGACTGCTATTGAATCTGACAAGGAGTTCATGGATGTTGTCTCTCCGTCTCCTTGTTAA
AA sequence Show only first row Show all	>Potri.014G025600.1 pacid=42762867 polypeptide=Potri.014G025600.1.p locus=Potri.014G025600 ID=Potri.014G025600.1.v4.1 annot-version=v4.1 MNPTTVTHISEYFIKPKHIVDEATQPYYLAPWELAMLSSHYIQKGLLFAKPPQTENQLGFKIMDFLEDLKQSLSLTLVHFYPLAGRLATSKSENPPSYVV FVDCNNSPGARFTYATVDLTASDVLSPTYVPLVVQSFFDHDRALNHDGHTKSLLTIQVTELIDGIFIGCSVNHSIVDGSSFWHFFNMWSEIFQGKGDDVS ISRPPVLNRWFPDGHGPALSLPFTHHDQFLRPFEAPLLKERMFHFSSESIARLKAKANAEFNTNKISSFQSLSALVWRCITRARNLPRDQVTCCRLATNN RSRLNPPLSPDYFGCSIQALRAGVSTAGEVLEQNLGWTAWQLHQAVVSHGDEKAREFLNLWLKSPFINHIGKLFDPHSVMMGSSPRFNKYGNEFGLGKAL ALRSGYALKFSGKASAYPGHEGGGSIELEICLSPDEMTAIESDKEFMDVVSPSPC

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G42830			HXXXD-type acyl-transferase fa...		Potri.014G025600 [exp]	0	1
AT3G05950			RmlC-like cupins superfamily p...		Potri.019G026200 [exp]	1.00	0.9465
AT5G40010		ASD, AATP1	ATPase-in-Seed-Development, AA...		Potri.013G047950 [exp]	4.00	0.9382
AT4G01575			serine protease inhibitor, Kaz...		Potri.014G108800 [exp]	6.48	0.9126
AT3G03380		DEG7, DEGP7	degradation of periplasmic pro...		Potri.004G088700 [exp]	7.74	0.9000
					Potri.012G121044 [exp]	8.00	0.9284
AT2G18370			Bifunctional inhibitor/lipid-t...		Potri.001G232900 [exp]	9.16	0.9087
AT1G05675			UDP-Glycosyltransferase superf...		Potri.007G141900 [exp]	9.27	0.8683
					Potri.014G057850 [exp]	13.60	0.8724
AT2G22540	MADS	AGL22, SVP	SHORT VEGETATIVE PHASE, AGAMOU...		Potri.007G115200 [exp]	18.00	0.9040	MADS1.5
AT4G14860	OFP	ATOFP11	ovate family protein 11 (.1)		Potri.010G087200 [exp]	20.78	0.8889

Compare expression of checked genes

Potri.014G025600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.