Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	NAC146
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G69490 89 / 2e-20 NAC NAP, ANAC029, ATNAP Arabidopsis NAC domain containing protein 29, NAC-like, activated by AP3/PI (.1) AT3G03200 87 / 3e-19 NAC ANAC045 NAC domain containing protein 45 (.1) AT4G27410 86 / 3e-19 NAC RD26, ANAC072 NAC (No Apical Meristem) domain transcriptional regulator superfamily protein (.1), NAC (No Apical Meristem) domain transcriptional regulator superfamily protein (.2), NAC (No Apical Meristem) domain transcriptional regulator superfamily protein (.3) AT5G17260 87 / 6e-19 NAC ANAC086 NAC domain containing protein 86 (.1) AT1G65910 84 / 6e-18 NAC ANAC028 NAC domain containing protein 28 (.1) AT3G10490 81 / 8e-18 NAC ANAC051, ANAC052 Arabidopsis NAC domain containing protein 51, NAC domain containing protein 52 (.1.2) AT5G46590 81 / 1e-17 NAC ANAC096 NAC domain containing protein 96 (.1) AT3G17730 81 / 1e-17 NAC ANAC057 NAC domain containing protein 57 (.1) AT4G36160 82 / 2e-17 NAC ANAC076, VND2 VASCULAR-RELATED NAC-DOMAIN 2, NAC domain containing protein 76 (.1) AT1G54330 81 / 2e-17 NAC ANAC020 NAC domain containing protein 20 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G038000 [exp] 91 / 1e-20 AT1G61110 332 / 3e-113 NAC domain containing protein 25 (.1) Potri.011G046700 [exp] 89 / 4e-20 AT1G61110 331 / 8e-113 NAC domain containing protein 25 (.1) Potri.008G089000 [exp] 86 / 3e-19 AT1G69490 331 / 6e-115 Arabidopsis NAC domain containing protein 29, NAC-like, activated by AP3/PI (.1) Potri.005G225800 [exp] 86 / 4e-19 AT4G28530 270 / 1e-89 NAC domain containing protein 74 (.1.2) Potri.002G037100 [exp] 85 / 7e-19 AT4G28530 276 / 6e-92 NAC domain containing protein 74 (.1.2) Potri.008G081500 [exp] 85 / 9e-19 AT1G54330 316 / 1e-107 NAC domain containing protein 20 (.1) Potri.010G166200 [exp] 84 / 9e-19 AT1G69490 305 / 1e-104 Arabidopsis NAC domain containing protein 29, NAC-like, activated by AP3/PI (.1) Potri.010G174600 [exp] 84 / 3e-18 AT1G54330 290 / 2e-97 NAC domain containing protein 20 (.1) Potri.011G123500 [exp] 83 / 6e-18 AT3G15510 323 / 4e-109 NAC-REGULATED SEED MORPHOLOGY 1, Arabidopsis NAC domain containing protein 56, NAC domain containing protein 2 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10010037 [exp] 243 / 2e-79 AT1G65910 102 / 4e-24 NAC domain containing protein 28 (.1) Lus10010371 [exp] 163 / 3e-50 AT5G17260 70 / 1e-14 NAC domain containing protein 86 (.1) Lus10007410 [exp] 89 / 3e-20 AT3G15510 241 / 1e-78 NAC-REGULATED SEED MORPHOLOGY 1, Arabidopsis NAC domain containing protein 56, NAC domain containing protein 2 (.1) Lus10026496 [exp] 89 / 7e-20 AT1G61110 244 / 6e-79 NAC domain containing protein 25 (.1) Lus10006547 [exp] 89 / 7e-20 AT3G04070 337 / 4e-114 NAC domain containing protein 47 (.1.2) Lus10019926 [exp] 88 / 1e-19 AT1G61110 243 / 4e-78 NAC domain containing protein 25 (.1) Lus10013964 [exp] 88 / 1e-19 AT1G61110 225 / 2e-71 NAC domain containing protein 25 (.1) Lus10003269 [exp] 88 / 2e-19 AT3G04070 324 / 3e-109 NAC domain containing protein 47 (.1.2) Lus10036117 [exp] 87 / 2e-19 AT3G15510 241 / 2e-78 NAC-REGULATED SEED MORPHOLOGY 1, Arabidopsis NAC domain containing protein 56, NAC domain containing protein 2 (.1) Lus10015389 [exp] 87 / 2e-19 AT1G61110 223 / 6e-71 NAC domain containing protein 25 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF02365 [poplar] [flax] NAM No apical meristem (NAM) protein
Representative CDS sequence Show only first row Show all	>Potri.014G025700.1 pacid=42762793 polypeptide=Potri.014G025700.1.p locus=Potri.014G025700 ID=Potri.014G025700.1.v4.1 annot-version=v4.1 ATGAATACTTCAATGGAAGAGAGCAACACAAACCCCAAAACGCTGTCGTCTTCACTCCCACCTGGTTGCCGATTTTACCCTTCCGACGAACAACTCTTCT GTTACTACCTCAAAAACAAGAACCGCACCGTTCCTAACGACACCGATGACGTCAACGGCTATGATTTGATTAAGGAGCTGGATTTGTACGATTACGAGCC GTTTGATTTACCTGAGAATGCGTGCTATGCGTATGGTTATAAAGCGAGGAAGAGACACTGGTATTGTTATACGAAGGAGCAAGTTGGGGTTCCGAGGAGG AAGGCAAAAGGAGGGTTTTGGAGGATAAGTGGTAGGGTTAGGGATGTTGTGGTGGGTCCAGGTGGGGAGGCGGTCATGGGTACAAGGACTAGGTTTGTTT TTTACATGGGGAATTCTGTTAAGAGTGCAGTCAGGACTGGTTGGGTTTTGTACGAGTATGCTCTTGTCGATCATGCTAAGGCTTCATTTGTTCTATGTCG GGTATTTGTCAAGTCTCGTGGAGGAAATAGCATTTCAGAGAATGTTGTAAGTTCCTGTGCCGAAGAAAGTGTTTCTGCTTTACCCAGCATTGGTGCTCAG CATGATGAATTCCTCACACCAGACATTGCTGAGGCTAAGGGGCCTAATGACTTATCTAGATATTCTGCAAGATTGGATAGAGAGCTTGATGATCAAGTCA CAACTAGACCTCTTTCTATTTCCAGTTTCCAGTTTCCATCAGACAGTCAATGCAACGAGGCGGTTAGGAGGACATCTGGGCCTACTGGTGGTAACATGTA TGTAGATGCTGAAACTTCCCAGCAGTTACAATCCATTTTAGAGGGAGATTTTATAGAGCTGGATGATCTTGTGGATTGA
AA sequence Show only first row Show all	>Potri.014G025700.1 pacid=42762793 polypeptide=Potri.014G025700.1.p locus=Potri.014G025700 ID=Potri.014G025700.1.v4.1 annot-version=v4.1 MNTSMEESNTNPKTLSSSLPPGCRFYPSDEQLFCYYLKNKNRTVPNDTDDVNGYDLIKELDLYDYEPFDLPENACYAYGYKARKRHWYCYTKEQVGVPRR KAKGGFWRISGRVRDVVVGPGGEAVMGTRTRFVFYMGNSVKSAVRTGWVLYEYALVDHAKASFVLCRVFVKSRGGNSISENVVSSCAEESVSALPSIGAQ HDEFLTPDIAEAKGPNDLSRYSARLDRELDDQVTTRPLSISSFQFPSDSQCNEAVRRTSGPTGGNMYVDAETSQQLQSILEGDFIELDDLVD

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G69490	NAC	NAP, ANAC029, A...	Arabidopsis NAC domain contain...		Potri.014G025700 [exp]	0	1	NAC146
AT5G23570		SGS3, ATSGS3	SUPPRESSOR OF GENE SILENCING 3...		Potri.003G188350 [exp]	2.82	0.8495
AT1G69040		ACR4	ACT domain repeat 4 (.1.2)		Potri.008G109200 [exp]	3.16	0.8514
AT2G24270		ALDH11A3	aldehyde dehydrogenase 11A3 (....		Potri.018G020600 [exp]	6.00	0.8344
AT2G33630			NAD(P)-binding Rossmann-fold s...		Potri.002G005201 [exp]	7.21	0.8426
AT3G16520		UGT88A1	UDP-glucosyl transferase 88A1 ...		Potri.017G150100 [exp]	9.38	0.8353
AT4G33540			metallo-beta-lactamase family ...		Potri.008G085751 [exp]	10.39	0.8385
AT1G14740			Protein of unknown function (D...		Potri.008G138100 [exp]	11.48	0.8325
AT3G12360		ITN1	INCREASED TOLERANCE TO NACL, A...		Potri.008G048400 [exp]	12.48	0.7954
AT2G31130			unknown protein		Potri.004G055300 [exp]	15.42	0.8356
AT5G58130		ROS3	REPRESSOR OF SILENCING 3, RNA-...		Potri.018G151300 [exp]	16.91	0.8288

Compare expression of checked genes

Potri.014G025700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.