Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G02630 608 / 0 Protein kinase superfamily protein (.1) AT1G01540 574 / 0 Protein kinase superfamily protein (.1.2) AT4G01330 566 / 0 Protein kinase superfamily protein (.1.2) AT4G34500 476 / 1e-165 Protein kinase superfamily protein (.1) AT2G42960 467 / 2e-161 Protein kinase superfamily protein (.1) AT3G59110 463 / 3e-159 Protein kinase superfamily protein (.1) AT1G56720 444 / 3e-152 Protein kinase superfamily protein (.1.2.3) AT5G18500 439 / 2e-150 Protein kinase superfamily protein (.1.2) AT3G17420 435 / 5e-149 GPK1 glyoxysomal protein kinase 1 (.1) AT1G09440 416 / 9e-142 Protein kinase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G088800 [exp] 583 / 0 AT1G01540 687 / 0.0 Protein kinase superfamily protein (.1.2) Potri.005G139500 [exp] 537 / 0 AT4G02630 477 / 2e-166 Protein kinase superfamily protein (.1) Potri.002G059000 [exp] 494 / 9e-172 AT3G59110 704 / 0.0 Protein kinase superfamily protein (.1) Potri.004G154000 [exp] 484 / 3e-168 AT4G34500 564 / 0.0 Protein kinase superfamily protein (.1) Potri.005G203300 [exp] 485 / 4e-168 AT3G59110 686 / 0.0 Protein kinase superfamily protein (.1) Potri.009G115600 [exp] 484 / 6e-168 AT4G34500 553 / 0.0 Protein kinase superfamily protein (.1) Potri.005G003300 [exp] 477 / 6e-165 AT1G56720 712 / 0.0 Protein kinase superfamily protein (.1.2.3) Potri.013G003700 [exp] 474 / 8e-164 AT1G56720 677 / 0.0 Protein kinase superfamily protein (.1.2.3) Potri.010G001600 [exp] 441 / 3e-151 AT5G18500 635 / 0.0 Protein kinase superfamily protein (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10018722 [exp] 684 / 0 AT4G02630 642 / 0.0 Protein kinase superfamily protein (.1) Lus10024813 [exp] 651 / 0 AT4G02630 632 / 0.0 Protein kinase superfamily protein (.1) Lus10041593 [exp] 577 / 0 AT4G01330 568 / 0.0 Protein kinase superfamily protein (.1.2) Lus10036386 [exp] 545 / 0 AT1G01540 748 / 0.0 Protein kinase superfamily protein (.1.2) Lus10007919 [exp] 540 / 0 AT1G01540 751 / 0.0 Protein kinase superfamily protein (.1.2) Lus10012664 [exp] 518 / 0 AT4G02630 511 / 0.0 Protein kinase superfamily protein (.1) Lus10001423 [exp] 474 / 9e-164 AT3G59110 763 / 0.0 Protein kinase superfamily protein (.1) Lus10001055 [exp] 471 / 5e-161 AT3G59110 766 / 0.0 Protein kinase superfamily protein (.1) Lus10042324 [exp] 469 / 2e-156 AT4G34490 658 / 0.0 cyclase associated protein 1 (.1) Lus10020747 [exp] 455 / 2e-156 AT3G59110 737 / 0.0 Protein kinase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [poplar] [flax] PKinase PF00069 [poplar] [flax] Pkinase Protein kinase domain
Representative CDS sequence Show only first row Show all	>Potri.014G026100.1 pacid=42764347 polypeptide=Potri.014G026100.1.p locus=Potri.014G026100 ID=Potri.014G026100.1.v4.1 annot-version=v4.1 ATGTCTAACTATTTCTTGAACGATGAGCTATCGAAGAAGACATCAATCTTTGGTTTACGTTTATGGGTAGTGCTTGGTATTTGTGTAGGAGCTGCTATAG TTCTTCTTCTTTTCCTTATCTCTCTTTGGCTCACTTCTAAACGTAATAAGACTAGTAATAAAGCCAATAAACCTATGGCCACCACTAGTACCGCCACCAC TAAATTCGTTTCATCTCTCAACAACAACCCCACAATCCCCAACATTTCTAAAGAAATCCAGGAAATCCGGGTCGACCCGAGAAAACTTAACCACCCGGAT CCAGTTCCGGAGTCGGAGCTCCAGAATGGGGAGGAGACGACTAGTCCTGTCGGTGGGGGGAATAGAATTCATATCGAGATTGGGAAGGATCATAGAATTT CGTACCCCGAGCGGGTTGGCGGTTTGGGGAGTGGGAGTGGGGAGACCCGGTCTGGGCCTCGGTCGGGTGATCAAGCGGGTGCGGTGATTGCGGTGCCGGA AGTTTCACATTTGGGGTGGGGTCATTGGTATACTCTTAGAGAGCTTGAGGAGTCTACTAATTATTTTGCTGATGAAAATGTGATTGGTGAAGGCGGGTAT GGAATTGTTTACCGTGGTCTTTTGGAAGATAATACTAATGTTGCTGTCAAGAATTTGCTCAATAACAGGGGACAAGCTGAGAAGGAGTTTAAGGTCGAGG TGGAAGCAATTGGACGAGTACGGCATAAGAATTTGGTGAGGTTGCTTGGTTATTGTGCTGAAGGAGCTCATAGGATGCTTGTTTACGAGTTTGTTGAGAA TGGAAACTTAGAACAGTGGCTTCATGGAGATGTTGGGCCTTGCAGCCCTCTGACATGGGAGATTCGTATCAATATAATAATTGGAACAGCAAAAGGGCTG ACATACCTGCATGAGGGACTTGAGCCCAAGGTCGTTCATCGTGACATCAAATCGAGCAACATTTTGCTTGATAAGCAATGGAATTCTAAAGTATCTGATT TTGGCCTCGCAAAACTCTTGGGGTCAGAAAGTAGTTATGTGACAACTCGTGTAATGGGAACTTTTGGATATGTGGCTCCAGAATATGCCAGTACTGGAAT GTTGAATGAAAGAAGTGACGTGTACAGCTTTGGCATTCTTCTTATGGAAATAATTTCTGGAAGGAATCCTGTTGATTACAGCCGCCCTGCAGGAGAGGTG AACCTTGTTGAATGGCTTAAAACAATGGTCACAATTCGGAATGCAGAGGGGGTTTTGGATCCTAGGCTGCCGAAGAAGCCTTCTCCAAGGGCATTAAAGC GTGCCCTATTGGTGGCATTACGCTGTGTCGACCCAAATGCTCAAAAGAGACCGAAAATGGGGCATGTCGTACATATGCTAGAAGCAGATGAGTTCCCCTT CCGAGATGACCGTAGAGTTGGCAGGGAACCTGGGCGCTCCCATCATGATGTCATGAGGATGGATAAGCGTGTAAGTGAATCAGGTGATAGTAGTGGGTAT GAAAGTGGTGTTCAAACCAACAAGTCATTATGGAGAAAGAAAGAACCAGAAGAGCAGTGA
AA sequence Show only first row Show all	>Potri.014G026100.1 pacid=42764347 polypeptide=Potri.014G026100.1.p locus=Potri.014G026100 ID=Potri.014G026100.1.v4.1 annot-version=v4.1 MSNYFLNDELSKKTSIFGLRLWVVLGICVGAAIVLLLFLISLWLTSKRNKTSNKANKPMATTSTATTKFVSSLNNNPTIPNISKEIQEIRVDPRKLNHPD PVPESELQNGEETTSPVGGGNRIHIEIGKDHRISYPERVGGLGSGSGETRSGPRSGDQAGAVIAVPEVSHLGWGHWYTLRELEESTNYFADENVIGEGGY GIVYRGLLEDNTNVAVKNLLNNRGQAEKEFKVEVEAIGRVRHKNLVRLLGYCAEGAHRMLVYEFVENGNLEQWLHGDVGPCSPLTWEIRINIIIGTAKGL TYLHEGLEPKVVHRDIKSSNILLDKQWNSKVSDFGLAKLLGSESSYVTTRVMGTFGYVAPEYASTGMLNERSDVYSFGILLMEIISGRNPVDYSRPAGEV NLVEWLKTMVTIRNAEGVLDPRLPKKPSPRALKRALLVALRCVDPNAQKRPKMGHVVHMLEADEFPFRDDRRVGREPGRSHHDVMRMDKRVSESGDSSGY ESGVQTNKSLWRKKEPEEQ

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G02630			Protein kinase superfamily pro...		Potri.014G026100 [exp]	0	1
AT5G42785			unknown protein		Potri.002G034300 [exp]	8.30	0.7342
AT2G17850			Rhodanese/Cell cycle control p...		Potri.005G111200 [exp]	8.66	0.6659
AT1G34670	MYB	ATMYB93	myb domain protein 93 (.1)		Potri.002G096800 [exp]	9.38	0.6825
AT4G29100	bHLH	bHLH068	basic helix-loop-helix (bHLH) ...		Potri.018G083700 [exp]	10.19	0.7034
AT4G05000		VPS28-2, VPS28-...	vacuolar protein sorting-assoc...		Potri.011G043800 [exp]	11.61	0.6993
AT3G55520			FKBP-like peptidyl-prolyl cis-...		Potri.008G057900 [exp]	23.32	0.5800
AT4G30210		AR2, ATR2	P450 reductase 2 (.1.2)		Potri.006G167200 [exp]	25.69	0.6476	PSC450.2
AT4G04470		PMP22	Peroxisomal membrane 22 kDa (M...		Potri.011G007100 [exp]	28.35	0.6448
AT3G52480			unknown protein		Potri.006G204400 [exp]	29.54	0.6499
AT1G55760			BTB/POZ domain-containing prot...		Potri.001G468700 [exp]	30.39	0.6580

Compare expression of checked genes

Potri.014G026100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.