Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	Pt-AG12.2
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G67090 604 / 0 Subtilisin-like serine endopeptidase family protein (.1) AT5G67360 509 / 3e-170 ARA12 Subtilase family protein (.1) AT5G51750 497 / 3e-165 ATSBT1.3 subtilase 1.3 (.1) AT4G34980 496 / 6e-165 SLP2 subtilisin-like serine protease 2 (.1) AT3G14067 493 / 6e-164 Subtilase family protein (.1) AT2G05920 489 / 1e-162 Subtilase family protein (.1) AT3G14240 484 / 2e-160 Subtilase family protein (.1) AT1G01900 479 / 2e-158 SBTI1.1, ATSBT1.1 subtilase family protein (.1) AT1G04110 479 / 2e-158 SDD1 STOMATAL DENSITY AND DISTRIBUTION, Subtilase family protein (.1) AT1G20160 426 / 2e-138 ATSBT5.2 Subtilisin-like serine endopeptidase family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G026700 [exp] 1301 / 0 AT5G67090 582 / 0.0 Subtilisin-like serine endopeptidase family protein (.1) Potri.002G124500 [exp] 1215 / 0 AT5G67090 577 / 0.0 Subtilisin-like serine endopeptidase family protein (.1) Potri.007G045100 [exp] 854 / 0 AT5G67090 727 / 0.0 Subtilisin-like serine endopeptidase family protein (.1) Potri.009G100500 [exp] 575 / 0 AT4G34980 541 / 0.0 subtilisin-like serine protease 2 (.1) Potri.014G026600 [exp] 571 / 0 AT5G67360 546 / 0.0 Subtilase family protein (.1) Potri.004G173900 [exp] 517 / 4e-173 AT4G34980 1108 / 0.0 subtilisin-like serine protease 2 (.1) Potri.014G074600 [exp] 514 / 3e-172 AT1G01900 788 / 0.0 subtilase family protein (.1) Potri.009G133400 [exp] 505 / 1e-168 AT4G34980 1121 / 0.0 subtilisin-like serine protease 2 (.1) Potri.014G018900 [exp] 502 / 3e-167 AT5G67360 994 / 0.0 Subtilase family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10001130 [exp] 830 / 0 AT5G67090 581 / 0.0 Subtilisin-like serine endopeptidase family protein (.1) Lus10009748 [exp] 805 / 0 AT5G67090 601 / 0.0 Subtilisin-like serine endopeptidase family protein (.1) Lus10009365 [exp] 683 / 0 AT5G67090 637 / 0.0 Subtilisin-like serine endopeptidase family protein (.1) Lus10024815 [exp] 671 / 0 AT5G67090 543 / 0.0 Subtilisin-like serine endopeptidase family protein (.1) Lus10042644 [exp] 600 / 0 AT5G67090 413 / 5e-136 Subtilisin-like serine endopeptidase family protein (.1) Lus10018721 [exp] 565 / 0 AT5G67360 531 / 7e-179 Subtilase family protein (.1) Lus10024814 [exp] 552 / 0 AT3G14240 504 / 3e-169 Subtilase family protein (.1) Lus10027891 [exp] 542 / 0 AT5G67360 531 / 3e-178 Subtilase family protein (.1) Lus10002392 [exp] 541 / 0 AT5G67360 530 / 3e-178 Subtilase family protein (.1) Lus10034900 [exp] 494 / 4e-164 AT2G05920 1107 / 0.0 Subtilase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00082 [poplar] [flax] Peptidase_S8 Subtilase family CL0570 [poplar] [flax] PPP-I PF05922 [poplar] [flax] Inhibitor_I9 Peptidase inhibitor I9
Representative CDS sequence Show only first row Show all	>Potri.014G026500.1 pacid=42764755 polypeptide=Potri.014G026500.1.p locus=Potri.014G026500 ID=Potri.014G026500.1.v4.1 annot-version=v4.1 ATGGCTACTCGTCGCGAGTTTCTCTTGTCTAAGTTGTGGATTTGCTCTATCACTATCCTGCATTTCACTGGAACATTATCACAAACCGACAATTATATTG TTCACATGGATTTATCCGTGATGCCCAAGTCCTTTTCAGGCCAGCATCATTGGTACCTGTCCACTCTTGCTTCTGTATTTGATGTCTCTGATAGTAGCAC CGCCAGGGCCAGCCCTGCCACTTATTTGACTGCCTCTTCTAAACTTCTTTATAGTTATACTCATGTTATCAATGGTTTTAGTGCTAGCCTCACTCCATCT GAGCTGGAGGCTTTAAAAAAGTCTCCGGGCTACATTTCTTCCATTAAAGACTTGCCTGTTAAGCATGATACAACTCATTCAACCAAATTTCTTGGCCTTG CACCTCAGTCCCCAGCATGGAAGGCGTCAAATCTTGGTGACGGTATAATTATTGGATTGGTGGACTCAGGTGTTTGGCCAGAAAGCGAGAGTTACAATGA CCATGGAATGTCTGAAATTCCAAAAAGATGGAAAGGAGGGTGTCAAAGTGGAGCTCAGTTCAACTCCTCAATGTGCAACAAAAAGCTCATTGGAGCTCGA TTTTTCAACAAAGGCCTAATTGCAAATAATCCCAACATCACAATATCTGTAAATTCGACGCGTGACACGGATGGCCATGGGACACACACATCTAGCACAG CTGCTGGAAATTACGTGGAAGGTGCATCATACTTTGGCTATGCCAAAGGAACTGCTAATGGAGTGGCTCCACGGGCACATGTAGCCATGTACAAGGCTCT GTGGGATAACCATGCCTATACAACCGATGTAATTGCTGCTATTGATCAAGCAATTAGCGATGGTGTAGATGTATTATCTTTGTCATTAGGCTTTGGTGGA GTACCTTTGAATGAAGATCCTCTTGCCTTGGCAACATTTGCAGCCACAGAGAAGAATGTATTCGTGTCCACTTCTGCCGGAAACGAGGGGCCTTTCTATG AGACACTACATAATGGCATACCTTGGGTGTTAACAGTTGCTGCTGGTACTCTAGACCGCGAATTCGATGCAGTTTTGACACTTGGCAATGGAATTTCGAT CACAGGCTCATCTTTCTATTTGGGGAGTTCATCGTTTAGCGAAGTACCGCTCGTTTTCATGGAAAGATGTGACAGCGAATTGATTAAAACTGGACCGAAG ATCGTGGTCTGTCAAGGTGCGTATGAGAGTAACGACTTAAGTGATCAAGTTGAAAATGTGAGAAATGCAGGTGTTACTGCAGGTGTCTTCATAACAAATT TCACAGACACTGAAGAATTCATCGGTGATAGTTTTCCAGTTGTGATTGTGAATTTAAAGGATGGAAAAACCATCATAGATTACATCAAAAGCAGTAACAG TCCACAAGCAAGCGCGGAATTTCGGAAAACAAATCTGGGGATTGAACCAGCTCCGAGAGTTGCTAGTTACAGTTCTAGAGGACCATCCTCGAGCTGTCCA TTGGTCTTGAAGCCTGACATTATGGCTCCTGGTGCACTAATCTTAGCAGCATGGCCTCAAAATGTTTCAGTGGATTTGAACGATTCGCAGCCTATTTTCA GCAATTTCAAAATATTGTCAGGGACATCCATGGCTTGTCCGCATGCAGCTGGAGTGGCTGCACTCTTGAGGGAGGTACACCCTGATTGGAGCCCAGCAGC CATTCGATCAGCCATGATGACCACTGCTGATATAACGGATAACACTATGGAACCTATTAAAGACATTGGTTCTGGTAATAGAATAAATCCAGCTAGTCCT CTAGACATGGGAGCTGGACAAGTTAACCCCAACAAAGCTCTAGACCCGGGTCTCATTTATGACGCGAATTCAACTGATTATGTGAGATTACTTTGTGCCA CAAACTTCACCGAAAAAGAAATCCAAGTTATCACAAGATCATCTTCTACCGATTGTTCCAACCCATCCAGTGACCTCAACTACCCTTCTTTTATCGCCTA CTTCAACGAGAGATTTTCGCCATCAAATTTGACAACTGTGCGTGAATTTCATAGGACCGTGACCAATGTTGGAGAGGGAATTTCTACTTACACAGTAAGT GTGACTCCCATGAGTGGGTTAAAAGTCAATGTCATGCCAGACAAGTTGGAGTTCAAGACCAAGTATGAGAAGCTAAGTTACAAACTGACTATTGAAGGTC CAGCACTTCTGGACGAAGCAGTCACTTTTGGTTATCTCAGTTGGGCTGATGCTGGGGGTAAACATGTTGTCAGGAGTCCCATAGTGGCTACAACTTTAAT CCCAGATGATCCAGATGATGAAGAAATCAAAGGTTAA
AA sequence Show only first row Show all	>Potri.014G026500.1 pacid=42764755 polypeptide=Potri.014G026500.1.p locus=Potri.014G026500 ID=Potri.014G026500.1.v4.1 annot-version=v4.1 MATRREFLLSKLWICSITILHFTGTLSQTDNYIVHMDLSVMPKSFSGQHHWYLSTLASVFDVSDSSTARASPATYLTASSKLLYSYTHVINGFSASLTPS ELEALKKSPGYISSIKDLPVKHDTTHSTKFLGLAPQSPAWKASNLGDGIIIGLVDSGVWPESESYNDHGMSEIPKRWKGGCQSGAQFNSSMCNKKLIGAR FFNKGLIANNPNITISVNSTRDTDGHGTHTSSTAAGNYVEGASYFGYAKGTANGVAPRAHVAMYKALWDNHAYTTDVIAAIDQAISDGVDVLSLSLGFGG VPLNEDPLALATFAATEKNVFVSTSAGNEGPFYETLHNGIPWVLTVAAGTLDREFDAVLTLGNGISITGSSFYLGSSSFSEVPLVFMERCDSELIKTGPK IVVCQGAYESNDLSDQVENVRNAGVTAGVFITNFTDTEEFIGDSFPVVIVNLKDGKTIIDYIKSSNSPQASAEFRKTNLGIEPAPRVASYSSRGPSSSCP LVLKPDIMAPGALILAAWPQNVSVDLNDSQPIFSNFKILSGTSMACPHAAGVAALLREVHPDWSPAAIRSAMMTTADITDNTMEPIKDIGSGNRINPASP LDMGAGQVNPNKALDPGLIYDANSTDYVRLLCATNFTEKEIQVITRSSSTDCSNPSSDLNYPSFIAYFNERFSPSNLTTVREFHRTVTNVGEGISTYTVS VTPMSGLKVNVMPDKLEFKTKYEKLSYKLTIEGPALLDEAVTFGYLSWADAGGKHVVRSPIVATTLIPDDPDDEEIKG

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G67090			Subtilisin-like serine endopep...		Potri.014G026500 [exp]	0	1	Pt-AG12.2
AT3G02110		SCPL25	serine carboxypeptidase-like 2...		Potri.017G094100 [exp]	1.41	0.8368
AT1G17100			SOUL heme-binding family prote...		Potri.010G044200 [exp]	6.48	0.7857
AT5G42680			Protein of unknown function, D...		Potri.014G035000 [exp]	14.49	0.8045
AT2G29150			NAD(P)-binding Rossmann-fold s...		Potri.013G026100 [exp]	17.54	0.7843	SAG13.4
AT5G47380			Protein of unknown function, D...		Potri.001G157200 [exp]	28.39	0.7561
AT2G45660	MADS	ATSOC1, SOC1, A...	SUPPRESSOR OF OVEREXPRESSION O...		Potri.002G151700 [exp]	30.00	0.7271
AT1G75270		DHAR2	dehydroascorbate reductase 2 (...		Potri.008G049300 [exp]	31.74	0.6964
AT4G39330		AtCAD1, ATCAD9	cinnamyl alcohol dehydrogenase...		Potri.001G307200 [exp]	38.06	0.7459	Pt-MSACAD1.1,CADL10
					Potri.001G379400 [exp]	44.74	0.7457
AT5G19440			NAD(P)-binding Rossmann-fold s...		Potri.009G057600 [exp]	44.89	0.7121	CCRL2,CCR.9

Compare expression of checked genes

Potri.014G026500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.