Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G67360 546 / 0 ARA12 Subtilase family protein (.1) AT2G05920 541 / 0 Subtilase family protein (.1) AT3G14240 527 / 4e-177 Subtilase family protein (.1) AT3G14067 516 / 4e-173 Subtilase family protein (.1) AT5G51750 516 / 5e-173 ATSBT1.3 subtilase 1.3 (.1) AT5G67090 505 / 4e-169 Subtilisin-like serine endopeptidase family protein (.1) AT4G34980 502 / 1e-167 SLP2 subtilisin-like serine protease 2 (.1) AT1G04110 490 / 6e-163 SDD1 STOMATAL DENSITY AND DISTRIBUTION, Subtilase family protein (.1) AT2G04160 452 / 2e-148 AIR3 AUXIN-INDUCED IN ROOT CULTURES 3, Subtilisin-like serine endopeptidase family protein (.1) AT1G01900 450 / 2e-147 SBTI1.1, ATSBT1.1 subtilase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G100500 [exp] 736 / 0 AT4G34980 541 / 0.0 subtilisin-like serine protease 2 (.1) Potri.014G026700 [exp] 599 / 0 AT5G67090 582 / 0.0 Subtilisin-like serine endopeptidase family protein (.1) Potri.002G124500 [exp] 590 / 0 AT5G67090 577 / 0.0 Subtilisin-like serine endopeptidase family protein (.1) Potri.014G026500 [exp] 589 / 0 AT5G67090 604 / 0.0 Subtilisin-like serine endopeptidase family protein (.1) Potri.007G045100 [exp] 578 / 0 AT5G67090 727 / 0.0 Subtilisin-like serine endopeptidase family protein (.1) Potri.012G131500 [exp] 541 / 0 AT5G51750 1102 / 0.0 subtilase 1.3 (.1) Potri.015G133800 [exp] 538 / 0 AT5G51750 1113 / 0.0 subtilase 1.3 (.1) Potri.006G141200 [exp] 537 / 0 AT2G05920 1103 / 0.0 Subtilase family protein (.1) Potri.004G173900 [exp] 536 / 0 AT4G34980 1108 / 0.0 subtilisin-like serine protease 2 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10018721 [exp] 1042 / 0 AT5G67360 531 / 7e-179 Subtilase family protein (.1) Lus10024814 [exp] 978 / 0 AT3G14240 504 / 3e-169 Subtilase family protein (.1) Lus10002392 [exp] 663 / 0 AT5G67360 530 / 3e-178 Subtilase family protein (.1) Lus10027891 [exp] 657 / 0 AT5G67360 531 / 3e-178 Subtilase family protein (.1) Lus10002393 [exp] 609 / 0 AT5G67360 450 / 9e-148 Subtilase family protein (.1) Lus10024815 [exp] 580 / 0 AT5G67090 543 / 0.0 Subtilisin-like serine endopeptidase family protein (.1) Lus10001130 [exp] 571 / 0 AT5G67090 581 / 0.0 Subtilisin-like serine endopeptidase family protein (.1) Lus10009748 [exp] 565 / 0 AT5G67090 601 / 0.0 Subtilisin-like serine endopeptidase family protein (.1) Lus10033431 [exp] 540 / 0 AT2G05920 1103 / 0.0 Subtilase family protein (.1) Lus10034900 [exp] 538 / 0 AT2G05920 1107 / 0.0 Subtilase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00082 [poplar] [flax] Peptidase_S8 Subtilase family CL0570 [poplar] [flax] PPP-I PF05922 [poplar] [flax] Inhibitor_I9 Peptidase inhibitor I9
Representative CDS sequence Show only first row Show all	>Potri.014G026600.1 pacid=42763332 polypeptide=Potri.014G026600.1.p locus=Potri.014G026600 ID=Potri.014G026600.1.v4.1 annot-version=v4.1 ATGATCAAAGCAATGAATTCCTCAGACTTTCTTTCACTCCAGGCATTGTCTTGCCTCTTGTTATTGCTAATTGGAATAAGCAATGCGGAGTTAAAAAGTG AAGAATACCAAACATACATCGTCCACATGGACAGCTCTCACAAGCCTGCCACATTCTTAACCCACGAATCATGGCACCGGTTCACGCTCAGATCTTTATC AAATCCAGCCGATGGCGAAGGAACCTTTTTGTACTCCTACAGTCATGTCATGCAGGGGTTTAGTGCCAGGCTCACACCTTCTCAGTTGGCTGAAATCGAG AAATCCCCAGCTCACATTGGCACATATAGAGAGTCATTTGGGAAGCTATTCACCACCCACAGCCCCAAGTTTCTAGGATTGAGACAAAACTCTGGAATAT TGCCCACTGCATCTCGTGGTGAAGGAGTGATCATTGGGATCATTGATACAGGAATTTGGCCAGAGAGTGAAAGTTTTCATGACAAAGGCATGCCACCAGT TCCTCAGAGATGGAAGGGCAAGTGTGAGAATGGCACAGCATTTAGCCCTTCTGCCTGTAACAGGAAGCTCATTGGCGCTCGATCTTTCAGCAAAGGACTC ATAGCTGCAGGAAGAAAAATTTCTACAGAGTATGACTATGACTCCGCGAGAGACTTCTTTGGTCATGGAACACACACATCATCCACCGCGGCTGGTAGCT GTGTTCTTGGTGCAAATCACTTTGGATATGCAAGAGGCACAGCCAGAGGAGTAGCACCTGCCGCACATGTTGCCATGTACAAGGTACTCTTTGCAACAGA TACTGAAGAGAGTGCAGCAACTGATGTACTGGCTGGAATGGACCAAGCTATTGCTGATGAGGTTGACATTATGTCATTGTCTCTGGGTTTTACGCAAACA CCATACTTCAATGATGTTATTGCCATAGCTTCACTTTCAGCAATGGAGAAAAACATTTTTGTTGTATGTGCAGCTGGGAATGATGGAGCCTATAATTCCA CGTACAATGGTGCACCCTGGATCACAACAGTCGGAGCTGGCACACTTGATCGGAGTTTCACTGCTACAATGACTCTAGAAAATGGGTTGACATTTGAAGG AACATCTTACTTTCCACAGAGCATTTACATCGAAGATGTTCCATTATATTATGGCAAAAGTAACGGGTCCAAATCAATATGCAACTACGGAGCATTGAAT AGAAGTGAGGTTCATCGAAAGATAGTACTCTGTGATAATAGCACCACCATAGATGTTGAAGGGCAAAAGGAGGAGCTTGAAAGGGTAGGTGCATACGCTG GAATATTCATGACAGATTTTTCACTTTTAGATCCAGAAGACTACAGCATTCCCAGCATAGTTCTACCAACTGTTTCTGGGGCTTTGGTTAGAGAGTATGT GGCTAACGTGACTGCAGCAAAGGTGAAGAGCATGGCATTTTTGTCCACTAATTTGGGTGTCAAACCGGCACCTCAAGTGGCTTATTTTTCTTCAAGAGGC CCAGATCCAATCACCCCAGGTGTCCTAAAACCAGATATTCTTGCTCCAGGAGTTGACGTGCTTGCAGCAATTGCACCAAACAAGCCTTTCATGGAATTAG GGAAATATGATTTGACAACAGATTATGCTTTATACTCGGGCACATCAATGTCAGCACCACATGTTGCAGGAGTAGCAGCTTTACTAAAAAATATTCATCC TGAATGGAACCCTGCAGCCATCCGATCAGCTCTTATGACCACGGCATATACCAAAGACAACACTCGCACTACCATGAAAAACCAGATGATAAATCTTCCA GCTACACCTTTGGACTTTGGTGCTGGACACATCAATCCAAACAAAGCTATGGACCCTGGACTTATCTATGACATGAATGTTCAAGATTATGTCAACTTCT TATGTGGCCTTGGCTATACTGCAAAGCAGATGAGTGCTGTTCTCAGACGTAATCAATGGAGCTGCAGTCAAGAACCAACGGACCTGAATTATCCTTCCAT TACAGCCATATTTACCAACAAAACCAGCTCTCCAACAACAAAGACATTTAGCAGGGTTGTGACGAATGTGGGAGATGATGACAGTGTTTACCAAGCAACT ATAGAAATTCCTAAAGAGATGAGAATCAAGGTAGAGCCAAGAACCCTGTCATTCACAAAGAAAAACCAAAAGCAAGGTTTTGTCATCAGTATCGACATTG ATGAGGATGCTCCAACCGTGACGTATGGCTATCTCAAATGGATCGATCAACATAATCACACAGTATCCAGCCCAGTAGTGGCTATCAAATTCTAA
AA sequence Show only first row Show all	>Potri.014G026600.1 pacid=42763332 polypeptide=Potri.014G026600.1.p locus=Potri.014G026600 ID=Potri.014G026600.1.v4.1 annot-version=v4.1 MIKAMNSSDFLSLQALSCLLLLLIGISNAELKSEEYQTYIVHMDSSHKPATFLTHESWHRFTLRSLSNPADGEGTFLYSYSHVMQGFSARLTPSQLAEIE KSPAHIGTYRESFGKLFTTHSPKFLGLRQNSGILPTASRGEGVIIGIIDTGIWPESESFHDKGMPPVPQRWKGKCENGTAFSPSACNRKLIGARSFSKGL IAAGRKISTEYDYDSARDFFGHGTHTSSTAAGSCVLGANHFGYARGTARGVAPAAHVAMYKVLFATDTEESAATDVLAGMDQAIADEVDIMSLSLGFTQT PYFNDVIAIASLSAMEKNIFVVCAAGNDGAYNSTYNGAPWITTVGAGTLDRSFTATMTLENGLTFEGTSYFPQSIYIEDVPLYYGKSNGSKSICNYGALN RSEVHRKIVLCDNSTTIDVEGQKEELERVGAYAGIFMTDFSLLDPEDYSIPSIVLPTVSGALVREYVANVTAAKVKSMAFLSTNLGVKPAPQVAYFSSRG PDPITPGVLKPDILAPGVDVLAAIAPNKPFMELGKYDLTTDYALYSGTSMSAPHVAGVAALLKNIHPEWNPAAIRSALMTTAYTKDNTRTTMKNQMINLP ATPLDFGAGHINPNKAMDPGLIYDMNVQDYVNFLCGLGYTAKQMSAVLRRNQWSCSQEPTDLNYPSITAIFTNKTSSPTTKTFSRVVTNVGDDDSVYQAT IEIPKEMRIKVEPRTLSFTKKNQKQGFVISIDIDEDAPTVTYGYLKWIDQHNHTVSSPVVAIKF

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G67360		ARA12	Subtilase family protein (.1)		Potri.014G026600 [exp]	0	1
AT1G59740			Major facilitator superfamily ...		Potri.005G001400 [exp]	3.16	0.9986
AT5G45890		SAG12	senescence-associated gene 12 ...		Potri.007G075900 [exp]	5.74	0.9979
AT3G21360			2-oxoglutarate (2OG) and Fe(II...		Potri.010G131300 [exp]	6.32	0.9977
AT5G45890		SAG12	senescence-associated gene 12 ...		Potri.007G076100 [exp]	9.79	0.9975
AT1G09910			Rhamnogalacturonate lyase fami...		Potri.011G006200 [exp]	9.79	0.9973
AT5G36110		CYP716A1	"cytochrome P450, family 716, ...		Potri.012G115000 [exp]	10.72	0.9976	CYP728F1
AT1G21270		WAK2	wall-associated kinase 2 (.1)		Potri.004G191500 [exp]	10.95	0.9971
AT2G26710		CYP72B1, CYP734...	PHYB ACTIVATION TAGGED SUPPRES...		Potri.010G139200 [exp]	11.00	0.9971
AT5G45890		SAG12	senescence-associated gene 12 ...		Potri.007G076000 [exp]	12.00	0.9973
					Potri.011G056500 [exp]	12.04	0.9560

Compare expression of checked genes

Potri.014G026600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.