Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	Pt-AG12.3
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G67090 582 / 0 Subtilisin-like serine endopeptidase family protein (.1) AT5G67360 485 / 5e-161 ARA12 Subtilase family protein (.1) AT4G34980 480 / 6e-159 SLP2 subtilisin-like serine protease 2 (.1) AT2G05920 475 / 4e-157 Subtilase family protein (.1) AT3G14067 472 / 9e-156 Subtilase family protein (.1) AT3G14240 460 / 4e-151 Subtilase family protein (.1) AT5G51750 459 / 1e-150 ATSBT1.3 subtilase 1.3 (.1) AT1G04110 457 / 8e-150 SDD1 STOMATAL DENSITY AND DISTRIBUTION, Subtilase family protein (.1) AT1G01900 450 / 3e-147 SBTI1.1, ATSBT1.1 subtilase family protein (.1) AT1G20160 395 / 1e-126 ATSBT5.2 Subtilisin-like serine endopeptidase family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G026500 [exp] 1238 / 0 AT5G67090 604 / 0.0 Subtilisin-like serine endopeptidase family protein (.1) Potri.002G124500 [exp] 1206 / 0 AT5G67090 577 / 0.0 Subtilisin-like serine endopeptidase family protein (.1) Potri.007G045100 [exp] 834 / 0 AT5G67090 727 / 0.0 Subtilisin-like serine endopeptidase family protein (.1) Potri.009G100500 [exp] 553 / 0 AT4G34980 541 / 0.0 subtilisin-like serine protease 2 (.1) Potri.014G026600 [exp] 541 / 0 AT5G67360 546 / 0.0 Subtilase family protein (.1) Potri.004G173900 [exp] 488 / 8e-162 AT4G34980 1108 / 0.0 subtilisin-like serine protease 2 (.1) Potri.001G167300 [exp] 484 / 2e-160 AT3G14067 978 / 0.0 Subtilase family protein (.1) Potri.012G131500 [exp] 479 / 2e-158 AT5G51750 1102 / 0.0 subtilase 1.3 (.1) Potri.014G074600 [exp] 479 / 2e-158 AT1G01900 788 / 0.0 subtilase family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10001130 [exp] 827 / 0 AT5G67090 581 / 0.0 Subtilisin-like serine endopeptidase family protein (.1) Lus10009748 [exp] 808 / 0 AT5G67090 601 / 0.0 Subtilisin-like serine endopeptidase family protein (.1) Lus10009365 [exp] 670 / 0 AT5G67090 637 / 0.0 Subtilisin-like serine endopeptidase family protein (.1) Lus10024815 [exp] 649 / 0 AT5G67090 543 / 0.0 Subtilisin-like serine endopeptidase family protein (.1) Lus10042644 [exp] 615 / 0 AT5G67090 413 / 5e-136 Subtilisin-like serine endopeptidase family protein (.1) Lus10018721 [exp] 533 / 1e-179 AT5G67360 531 / 7e-179 Subtilase family protein (.1) Lus10024814 [exp] 531 / 1e-179 AT3G14240 504 / 3e-169 Subtilase family protein (.1) Lus10027891 [exp] 515 / 6e-172 AT5G67360 531 / 3e-178 Subtilase family protein (.1) Lus10002392 [exp] 510 / 4e-170 AT5G67360 530 / 3e-178 Subtilase family protein (.1) Lus10011089 [exp] 479 / 4e-159 AT5G67360 1108 / 0.0 Subtilase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00082 [poplar] [flax] Peptidase_S8 Subtilase family CL0570 [poplar] [flax] PPP-I PF05922 [poplar] [flax] Inhibitor_I9 Peptidase inhibitor I9
Representative CDS sequence Show only first row Show all	>Potri.014G026700.1 pacid=42764054 polypeptide=Potri.014G026700.1.p locus=Potri.014G026700 ID=Potri.014G026700.1.v4.1 annot-version=v4.1 ATGGCTTCTCATCGCAATGTTCTCTTGTATAAGTTGTGGGTTTGCTTTATCACTATCCTATACTTCACTGAAACATTATCACAAACCGACAATTATATTG TTCACATGGATTTATCCGTGATGCCCAAATCCTTTTCAGGCCAGCATCATTGGTACTTGTCCACTCTTGCTTCTGTATCTGATGTCGCTGATAGTAGCAC CGCCAGGGCCAGTGAAGCCACCTTGACTGCCTCTTCTAAACTTCTTTATAGTTATACTCATGTTGTCAATGGTTTTAGTGCTAGTCTCACTCCTTCTGAG CTCGAGGCTTTAAAAACGTCTCCAGGCTACATTTCTTCCATTAAAGACTTACCTGTTAAACATGACACAACTCATTCACCCAAATATCTTGGCCTTACAC CTCAGTCCCCAGCATGGAAGGCGTCGAATTATGGTGACGGTATCATTATTGGGTTGGTGGACACAGGTGCCTGGCCAGAAAGCGAGAGTTACAATGACCA TGGAATGCCTGAAATTCCAAAGACTTGGAAAGGAGAATGTGAGAGTGGCACTCAATTCAACTCCTTAATGTGCAACAAAAAGCTCATTGGAGCTCGATTT TTCAACAAAGGCCTGATCGCAAAGTATCCCAATATCACCATATCTATGAATTCGACACGCGACACGGAAGGCCATGGGACCCACACATCTACCACAGCTG CTGGAAATTTTGTGGAAGGTGCATCATATTTCGGCTATGCCAAAGGAACTGCTAGTGGCGTGGCTCCACGGGCACATGTAGCCATGTACAAGGCTCTGTG GGATGAAGGTTCTTATACAACCGATTTAATTGCTGCAATTGATCAAGCAATTAGCGATGGTGTAGATGTATTATCTATGTCATTGGGCTTGGATGGACTT CCTTTGAATGAAGACCCTATTGCCTTGGCAACATTTGCAGCCATAGAGAAGAATATATTCGTGTCTACTTCTGCTGGAAACGAAGGGCCTTTCCGCGAGA CACTACACAATGGCATACCTTGGGTGTTAACAGTTGCTGCTGGCACTCTGGACCGTGGATTTGATGCAGTTTTGACACTTGGCAATGGAATTTCAATCAC AGGCTCATCTTTCTATTTGGGGAGTTCATCATTTAGCGACGTACCAATCGTTTTCATGGATGACTGTCACACAATGAGGGAATTGATTAAAATTGGACCG AAGATTGTGGTCTGTGAAGGTGCGTTTGACAGCAACGACTTAAGTGACCAGGTTGAAAATGTCAGCAGCGCAAATGTTACTGCAGGTGTCTTCATAACAA ATTTCACAGACACTGAGGAATTCATCGGGAATGGATTTCCAGTTGTGATTGTGAGTTTAAAGGATGGGAAAACCATCATAGATTACATCAAAAACAGCAA CAGTCCACAAGCAAGCGCAGAATTTCGGAAAACAGATCTGGGGATTGAACCAGCTCCGAGACTCACTAGTTACAGTTCTAGAGGGCCATCCACGAGCTGT CCATTGGTCATGAAGCCTGACATTATGGCTCCTGGTTCACTAATCTTAGCTGCATGGCCTCAAAATATTGCTGTGGATTCGAACAATTCACAGCCTATGT TCAGCAATTTCAATATATTGTCAGGGACATCCATGGCTTGTCCGCATGCAGCTGGAGTGGCTGCACTCCTGAGGAAGGCACACCCTGATTGGAGCCCAGC TGCTATGCGATCAGCCATGATTACCACTGCTGATACAATGGATAACACCATGGAACCTATTAAAGATATTGGTTTTGGTAATAGAATAAATCCAGCTACC CCTCTAGACATGGGAGCTGGACAAGTTAACCCCAACAAAGCTCTAGACCCAGGTCTCATTTATGATGTTAATTCAACTGATTATGTGAGATTACTTTGTG CCACAAATTTCACTGAAAAACAGATCCAAGTTATCACAAGATCATCTTCTATCGATTGTTCCAACCCATCCAGTGACCTCAACTACCCTTCTTTTATTGC CTACTTCAATGATAAAAAATCCCCATCAAATCTGACCATTGTGCGAGAATTTCATAGGACAGTGACCAATGTTGGAGAGGGAACATGTATTTACACAGCA AGTGTGACTCCCATGAGTGGGTTAAAAATCAATGTCATGCCAGACAAGTTGGAGTTTAAGACAAAGTACGAGAAGCTAAGCTACAAACTGACTATTGAAG GTCCAGCACTTCTGGACGAAACAGTGACCTTTGGTTCTCTCAATTGGGCTGATGCTGGGGGTAAACATGTTGTCAGGAGTCCCATAGCGGCAACAAGTTT GAGCCCAGAATTGTCTTCGAAGAATTAA
AA sequence Show only first row Show all	>Potri.014G026700.1 pacid=42764054 polypeptide=Potri.014G026700.1.p locus=Potri.014G026700 ID=Potri.014G026700.1.v4.1 annot-version=v4.1 MASHRNVLLYKLWVCFITILYFTETLSQTDNYIVHMDLSVMPKSFSGQHHWYLSTLASVSDVADSSTARASEATLTASSKLLYSYTHVVNGFSASLTPSE LEALKTSPGYISSIKDLPVKHDTTHSPKYLGLTPQSPAWKASNYGDGIIIGLVDTGAWPESESYNDHGMPEIPKTWKGECESGTQFNSLMCNKKLIGARF FNKGLIAKYPNITISMNSTRDTEGHGTHTSTTAAGNFVEGASYFGYAKGTASGVAPRAHVAMYKALWDEGSYTTDLIAAIDQAISDGVDVLSMSLGLDGL PLNEDPIALATFAAIEKNIFVSTSAGNEGPFRETLHNGIPWVLTVAAGTLDRGFDAVLTLGNGISITGSSFYLGSSSFSDVPIVFMDDCHTMRELIKIGP KIVVCEGAFDSNDLSDQVENVSSANVTAGVFITNFTDTEEFIGNGFPVVIVSLKDGKTIIDYIKNSNSPQASAEFRKTDLGIEPAPRLTSYSSRGPSTSC PLVMKPDIMAPGSLILAAWPQNIAVDSNNSQPMFSNFNILSGTSMACPHAAGVAALLRKAHPDWSPAAMRSAMITTADTMDNTMEPIKDIGFGNRINPAT PLDMGAGQVNPNKALDPGLIYDVNSTDYVRLLCATNFTEKQIQVITRSSSIDCSNPSSDLNYPSFIAYFNDKKSPSNLTIVREFHRTVTNVGEGTCIYTA SVTPMSGLKINVMPDKLEFKTKYEKLSYKLTIEGPALLDETVTFGSLNWADAGGKHVVRSPIAATSLSPELSSKN

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G67090			Subtilisin-like serine endopep...		Potri.014G026700 [exp]	0	1	Pt-AG12.3
AT5G11590	AP2_ERF	DREB3, TINY2	TINY2, Integrase-type DNA-bind...		Potri.003G050700 [exp]	5.65	0.7683
AT3G63380			ATPase E1-E2 type family prote...		Potri.013G040201 [exp]	6.32	0.7351
					Potri.002G249550 [exp]	8.36	0.7676
AT2G37440			DNAse I-like superfamily prote...		Potri.017G074200 [exp]	8.48	0.6837
AT5G18980			ARM repeat superfamily protein...		Potri.008G200500 [exp]	8.83	0.7224
AT1G55180		PLDALPHA4, PLDE...	phospholipase D alpha 4 (.1)		Potri.003G037700 [exp]	8.94	0.6704	PLDEPSILON.1
AT2G26560		PLP2, PLAIIA, P...	PATATIN-LIKE PROTEIN 2, phosph...		Potri.007G040300 [exp]	13.22	0.6268
AT3G47400			Plant invertase/pectin methyle...		Potri.015G127800 [exp]	18.33	0.6638	PME.7
AT4G02680		EOL1	ETO1-like 1 (.1)		Potri.002G048300 [exp]	23.21	0.6646
AT1G72680		ATCAD1	CINNAMYL ALCOHOL DEHYDROGENASE...		Potri.006G024250 [exp]	30.00	0.6457

Compare expression of checked genes

Potri.014G026700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.