Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	SBP1.3
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G45976 380 / 2e-132 SBP1 S-ribonuclease binding protein 1 (.1) AT1G60610 103 / 5e-25 SBP (S-ribonuclease binding protein) family protein (.1), SBP (S-ribonuclease binding protein) family protein (.2), SBP (S-ribonuclease binding protein) family protein (.3) AT1G10650 101 / 3e-24 SBP (S-ribonuclease binding protein) family protein (.1), SBP (S-ribonuclease binding protein) family protein (.2) AT3G12920 72 / 7e-14 BRG3 BOI-related gene 3, SBP (S-ribonuclease binding protein) family protein (.1) AT1G32740 71 / 2e-13 SBP (S-ribonuclease binding protein) family protein (.1) AT4G17680 66 / 7e-12 SBP (S-ribonuclease binding protein) family protein (.1), SBP (S-ribonuclease binding protein) family protein (.2) AT5G47050 64 / 1e-11 SBP (S-ribonuclease binding protein) family protein (.1) AT4G35070 64 / 2e-11 SBP (S-ribonuclease binding protein) family protein (.1), SBP (S-ribonuclease binding protein) family protein (.2) AT5G45100 54 / 6e-08 BRG1 BOI-related gene 1, SBP (S-ribonuclease binding protein) family protein (.1), SBP (S-ribonuclease binding protein) family protein (.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G124700 [exp] 513 / 0 AT1G45976 378 / 2e-131 S-ribonuclease binding protein 1 (.1) Potri.012G082200 [exp] 114 / 4e-29 AT1G10650 266 / 2e-87 SBP (S-ribonuclease binding protein) family protein (.1), SBP (S-ribonuclease binding protein) family protein (.2) Potri.010G042200 [exp] 112 / 3e-28 AT1G10650 393 / 2e-137 SBP (S-ribonuclease binding protein) family protein (.1), SBP (S-ribonuclease binding protein) family protein (.2) Potri.001G148600 [exp] 76 / 3e-15 AT1G32740 221 / 4e-70 SBP (S-ribonuclease binding protein) family protein (.1) Potri.003G085800 [exp] 73 / 3e-14 AT1G32740 220 / 9e-70 SBP (S-ribonuclease binding protein) family protein (.1) Potri.009G135400 [exp] 66 / 5e-12 AT4G35070 135 / 6e-39 SBP (S-ribonuclease binding protein) family protein (.1), SBP (S-ribonuclease binding protein) family protein (.2) Potri.004G175500 [exp] 65 / 1e-11 AT4G35070 142 / 1e-41 SBP (S-ribonuclease binding protein) family protein (.1), SBP (S-ribonuclease binding protein) family protein (.2) Potri.001G439600 [exp] 64 / 2e-11 AT3G12920 256 / 1e-83 BOI-related gene 3, SBP (S-ribonuclease binding protein) family protein (.1) Potri.011G142700 [exp] 58 / 3e-09 AT3G12920 233 / 1e-74 BOI-related gene 3, SBP (S-ribonuclease binding protein) family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10001131 [exp] 436 / 5e-154 AT1G45976 407 / 7e-143 S-ribonuclease binding protein 1 (.1) Lus10030597 [exp] 114 / 8e-29 AT1G10650 380 / 3e-132 SBP (S-ribonuclease binding protein) family protein (.1), SBP (S-ribonuclease binding protein) family protein (.2) Lus10030599 [exp] 113 / 1e-28 AT1G10650 380 / 4e-132 SBP (S-ribonuclease binding protein) family protein (.1), SBP (S-ribonuclease binding protein) family protein (.2) Lus10013027 [exp] 110 / 1e-27 AT1G10650 382 / 3e-133 SBP (S-ribonuclease binding protein) family protein (.1), SBP (S-ribonuclease binding protein) family protein (.2) Lus10030891 [exp] 108 / 4e-27 AT1G10650 275 / 1e-92 SBP (S-ribonuclease binding protein) family protein (.1), SBP (S-ribonuclease binding protein) family protein (.2) Lus10029136 [exp] 83 / 6e-18 AT1G10650 314 / 7e-107 SBP (S-ribonuclease binding protein) family protein (.1), SBP (S-ribonuclease binding protein) family protein (.2) Lus10031780 [exp] 66 / 6e-12 AT3G12920 260 / 3e-85 BOI-related gene 3, SBP (S-ribonuclease binding protein) family protein (.1) Lus10014118 [exp] 58 / 9e-10 AT4G35070 171 / 7e-54 SBP (S-ribonuclease binding protein) family protein (.1), SBP (S-ribonuclease binding protein) family protein (.2) Lus10019790 [exp] 58 / 1e-09 AT4G35070 170 / 1e-53 SBP (S-ribonuclease binding protein) family protein (.1), SBP (S-ribonuclease binding protein) family protein (.2) Lus10018294 [exp] 56 / 1e-08 AT5G45100 266 / 3e-88 BOI-related gene 1, SBP (S-ribonuclease binding protein) family protein (.1), SBP (S-ribonuclease binding protein) family protein (.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0229 [poplar] [flax] RING PF13920 [poplar] [flax] zf-C3HC4_3 Zinc finger, C3HC4 type (RING finger)
Representative CDS sequence Show only first row Show all	>Potri.014G027000.1 pacid=42763418 polypeptide=Potri.014G027000.1.p locus=Potri.014G027000 ID=Potri.014G027000.1.v4.1 annot-version=v4.1 ATGGCTCATCCCCAACACCAGTTTCAACAGCACTACCAACCTCAACAGCAACAACAACAACCTAAGAATTTGAGGAATTTATATGCAATCGACAGCCAGA TTTCTCCGGCAGTGGCTTATTTTAATCCCTCTAATTTGCAAGATCAGTCTCAGCATCCTCCCTATGTCCCTCCTTTTCATGTGGTGGGGTTTGCTCCGGG TCCTGGGAATGATGGCAGTGATGGGGGACTTGAATTGCAGTGGAATTATGGGCTAGAACCCAAGAGAAAGAGATTGAAGGAGCAAGACTTTTTGGAGAAT AATTCCCAGATTTCCTCTGTTGATTTCTTGCAAGCACGATCAGTCTCAACTGGGTTAGGGTTGTCTCTTGACAATACCCGTGTTTCATCTTCTGGTGACT CGGCTTTGTTATCGCTTATTGGTGATGATATTGATAGTGAATTGCAGCGACAGGATGTGGAGGTTGATAAATTCCTCAAAATTCAGGGTGATCGACTGCG GCAAACCATCCTAGAGAAGGTCCAAGCCGACCAACTTCAAACTATCTCACTTGTGGAAGAGAAGGTTCTTCAAAAACTTCGTCAGAAAGAAGCAGAGGTG GAGAGCATCAATAAGAAGAACATGGAACTTGAAGAGAAAATGGAACAGTTGTCTATGGAAGCAGGTGCATGGCAGGAACGGGCCAGATACAATGAAAACA TGATAAATGCCATCAAGTTCAACATCCAGCAAGTCTATGCTCAAAGTAGAGATAGTAAAGAAGGTTGTGGTGACAGTGAGGTGGATGATACAGCTTCGTG CTGCAATGGCCGTGCCATTGATTTTCACCTGCTTTCCAATGACAATAATGACATGAAGGAGCTGATGACTTGTAAGGCTTGCAGAGTCAATGAAGTTTGC ATGCTTTTGTTACCTTGTAAGCATCTCTGCCTCTGTAAGGATTGTGAAAGTAAGCTTAGTTTTTGTCCCCTGTGTCATTCCTCCAAGTTTATTGGCATGG AAGTTTATATGTAA
AA sequence Show only first row Show all	>Potri.014G027000.1 pacid=42763418 polypeptide=Potri.014G027000.1.p locus=Potri.014G027000 ID=Potri.014G027000.1.v4.1 annot-version=v4.1 MAHPQHQFQQHYQPQQQQQQPKNLRNLYAIDSQISPAVAYFNPSNLQDQSQHPPYVPPFHVVGFAPGPGNDGSDGGLELQWNYGLEPKRKRLKEQDFLEN NSQISSVDFLQARSVSTGLGLSLDNTRVSSSGDSALLSLIGDDIDSELQRQDVEVDKFLKIQGDRLRQTILEKVQADQLQTISLVEEKVLQKLRQKEAEV ESINKKNMELEEKMEQLSMEAGAWQERARYNENMINAIKFNIQQVYAQSRDSKEGCGDSEVDDTASCCNGRAIDFHLLSNDNNDMKELMTCKACRVNEVC MLLLPCKHLCLCKDCESKLSFCPLCHSSKFIGMEVYM

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G45976		SBP1	S-ribonuclease binding protein...		Potri.014G027000 [exp]	0	1	SBP1.3
AT5G65490			unknown protein		Potri.006G134400 [exp]	4.89	0.9417
AT1G16740			Ribosomal protein L20 (.1)		Potri.004G095475 [exp]	7.21	0.9444
AT2G20560			DNAJ heat shock family protein...		Potri.007G136700 [exp]	9.94	0.9166
AT5G20620		UBQ4	ubiquitin 4 (.1)		Potri.006G129600 [exp]	10.95	0.9381	SUBI.10
AT1G07400			HSP20-like chaperones superfam...		Potri.009G039200 [exp]	12.84	0.9318
AT5G13570		TDT, DCP2, ATDC...	TRIDENT, decapping 2 (.1.2)		Potri.008G039500 [exp]	14.79	0.7907
AT5G05410	AP2_ERF	DREB2A	DEHYDRATION-RESPONSIVE ELEMENT...		Potri.010G183700 [exp]	16.52	0.9228	Pt-DREB2.2
AT5G12020		HSP17.6II	17.6 kDa class II heat shock p...		Potri.006G223900 [exp]	16.61	0.9303	HSP17.11
AT1G18260		HRD3A, EBS5	EMS-mutagenized bri1 suppresso...		Potri.015G038100 [exp]	20.19	0.8935
AT5G15250		FTSH6, ATFTSH6	FTSH protease 6 (.1.2)		Potri.017G084000 [exp]	22.64	0.9187

Compare expression of checked genes

Potri.014G027000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.