Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	Pt-HSFB4.2
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G46264 334 / 1e-113 HSF SCZ, AT-HSFB4 SCHIZORIZA, heat shock transcription factor B4 (.1) AT5G62020 182 / 4e-55 HSF AT-HSFB2A ARABIDOPSIS THALIANA HEAT SHOCK TRANSCRIPTION FACTOR B2A, heat shock transcription factor B2A (.1) AT4G11660 181 / 1e-53 HSF AT-HSFB2B, HSFB2B HEAT SHOCK TRANSCRIPTION FACTOR B2B, winged-helix DNA-binding transcription factor family protein (.1) AT4G36990 165 / 2e-48 HSF AT-HSFB1, ATHSF4, HSF4, HsfB1 ARABIDOPSIS THALIANA HEAT SHOCK FACTOR 4, ARABIDOPSIS THALIANA CLASS B HEAT SHOCK FACTOR B1, heat shock factor 4 (.1) AT4G17750 163 / 1e-45 HSF ATHSFA1A, ATHSF1, HSF1 ARABIDOPSIS THALIANA CLASS A HEAT SHOCK FACTOR 1A, ARABIDOPSIS THALIANA HEAT SHOCK FACTOR 1, heat shock factor 1 (.1) AT1G32330 157 / 1e-43 HSF ATHSFA1D heat shock transcription factor A1D (.1) AT3G22830 151 / 7e-42 HSF AT-HSFA6B ARABIDOPSIS THALIANA HEAT SHOCK TRANSCRIPTION FACTOR A6B, heat shock transcription factor A6B (.1) AT3G02990 149 / 8e-41 HSF ATHSFA1E heat shock transcription factor A1E (.1) AT2G41690 143 / 2e-40 HSF AT-HSFB3, HSFB3 HEAT SHOCK TRANSCRIPTION FACTOR B3, heat shock transcription factor B3 (.1) AT5G16820 145 / 3e-39 HSF ATHSF3, ATHSFA1B, HSF3 ARABIDOPSIS THALIANA CLASS A HEAT SHOCK FACTOR 1B, ARABIDOPSIS HEAT SHOCK FACTOR 3, heat shock factor 3 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G124800 [exp] 625 / 0 AT1G46264 353 / 7e-121 SCHIZORIZA, heat shock transcription factor B4 (.1) Potri.001G273700 [exp] 273 / 8e-91 AT1G46264 251 / 2e-82 SCHIZORIZA, heat shock transcription factor B4 (.1) Potri.009G068000 [exp] 271 / 1e-89 AT1G46264 258 / 4e-85 SCHIZORIZA, heat shock transcription factor B4 (.1) Potri.007G043800 [exp] 187 / 4e-57 AT4G36990 241 / 3e-79 ARABIDOPSIS THALIANA HEAT SHOCK FACTOR 4, ARABIDOPSIS THALIANA CLASS B HEAT SHOCK FACTOR B1, heat shock factor 4 (.1) Potri.001G108100 [exp] 187 / 3e-56 AT4G11660 285 / 2e-94 HEAT SHOCK TRANSCRIPTION FACTOR B2B, winged-helix DNA-binding transcription factor family protein (.1) Potri.015G141100 [exp] 167 / 5e-49 AT5G62020 233 / 8e-76 ARABIDOPSIS THALIANA HEAT SHOCK TRANSCRIPTION FACTOR B2A, heat shock transcription factor B2A (.1) Potri.012G138900 [exp] 165 / 2e-48 AT5G62020 230 / 2e-74 ARABIDOPSIS THALIANA HEAT SHOCK TRANSCRIPTION FACTOR B2A, heat shock transcription factor B2A (.1) Potri.003G095000 [exp] 169 / 1e-47 AT1G32330 375 / 2e-125 heat shock transcription factor A1D (.1) Potri.016G056500 [exp] 158 / 2e-46 AT2G41690 218 / 1e-71 HEAT SHOCK TRANSCRIPTION FACTOR B3, heat shock transcription factor B3 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10001133 [exp] 327 / 1e-109 AT1G46264 319 / 4e-107 SCHIZORIZA, heat shock transcription factor B4 (.1) Lus10042646 [exp] 325 / 7e-109 AT1G46264 308 / 8e-103 SCHIZORIZA, heat shock transcription factor B4 (.1) Lus10008007 [exp] 187 / 5e-56 AT4G11660 306 / 3e-102 HEAT SHOCK TRANSCRIPTION FACTOR B2B, winged-helix DNA-binding transcription factor family protein (.1) Lus10014994 [exp] 181 / 3e-54 AT5G62020 259 / 2e-85 ARABIDOPSIS THALIANA HEAT SHOCK TRANSCRIPTION FACTOR B2A, heat shock transcription factor B2A (.1) Lus10024508 [exp] 181 / 5e-53 AT4G11660 308 / 3e-102 HEAT SHOCK TRANSCRIPTION FACTOR B2B, winged-helix DNA-binding transcription factor family protein (.1) Lus10019348 [exp] 171 / 1e-50 AT4G36990 254 / 3e-84 ARABIDOPSIS THALIANA HEAT SHOCK FACTOR 4, ARABIDOPSIS THALIANA CLASS B HEAT SHOCK FACTOR B1, heat shock factor 4 (.1) Lus10026819 [exp] 166 / 4e-50 AT1G46264 167 / 2e-51 SCHIZORIZA, heat shock transcription factor B4 (.1) Lus10030956 [exp] 172 / 4e-49 AT1G32330 451 / 1e-155 heat shock transcription factor A1D (.1) Lus10036062 [exp] 168 / 4e-49 AT1G46264 245 / 3e-79 SCHIZORIZA, heat shock transcription factor B4 (.1) Lus10000312 [exp] 168 / 1e-47 AT1G32330 437 / 1e-150 heat shock transcription factor A1D (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0123 [poplar] [flax] HTH PF00447 [poplar] [flax] HSF_DNA-bind HSF-type DNA-binding
Representative CDS sequence Show only first row Show all	>Potri.014G027100.1 pacid=42764048 polypeptide=Potri.014G027100.1.p locus=Potri.014G027100 ID=Potri.014G027100.1.v4.1 annot-version=v4.1 ATGGCTCTTATGTTGGATAATTGTGAAGGGATATTACTCTCATTGGACTCCCACAAGTCAGTCCCAGCTCCCTTCCTTACCAAAACCTATCAACTGGTAG ATGATCCAGCCACTGACCATATAGTTTCTTGGGGTGAAGATGACACTACTTTCGTTGTTTGGAGACCACCTGAGTTTGCTCGTGATCTCCTTCCTAACTA TTTCAAGCACAACAACTTCTCTAGCTTTGTCAGGCAACTCAATACATATGGTTTTAGGAAGATTGTACCTGACCGATGGGAGTTTGCTAATGAGTTTTTC AAGAAGGGAGAGAAGCATTTGCTTTGTGAAATCCATAGAAGGAAAACAGCTCAGCCACAAGTAGCTATCAATCAGCACCACCATCATCAGCACCACCCAC ATTCTCCCTTTGGTGTTAACGGACCCAGTTTCTTTCCCTTTTCAAGCAGAACCAGCATCTCTCCGTCTGATTCAGATGAGCAAGCCAACAACAACTGGTG TGATTCGCCTCCTCTCACTTCACCACCAAGAGGGGTTGCTAGCGCCACAGTTATTGGTGGTGGAGGTGGATATAATAGCTCAGTTTTTGCCTTATCTGAA GATAATGAGAGACTGAGGAGAAGCAACAATATGCTAATGTCTGAGCTTGCACACATGAAAAAGCTTTACAATGATATTATTTACTTTGTCCAAAATCATG TCAAGCCTGTTGCTCCCAGCAATTCCTACTCTTCTTCTTTGCTTCTTTGTGGCCCGGCACCATATGCTACTGCTAATCCTGTTACTTCTAATGGTTCTTT GGCACAAAAGCCTTTAAACCAGCTTCTTGGGTATTATCCTACTACTGCTCCAAACAACCCTAAGCAAGCTCCTCAAGTTCATGTTTTGAACTCTCCAACA ACTACTTCGCAGAGCTCTTTGACCTTTCTTGAAGAAGCCAACAACAACGGTTGCAAGACAAAGTTGTTTGGTGTCCCTTTACATTCCAAGAAAAGATTGC ACCCAGAGTATGGCTCTAATCCAGGAAATATGGAGACAAACAAGGCTCGTATGGTGTTGGACAAGGATGATTTAGGATTAAACCTCATGCCTCCTTCAAG ATGTTAG
AA sequence Show only first row Show all	>Potri.014G027100.1 pacid=42764048 polypeptide=Potri.014G027100.1.p locus=Potri.014G027100 ID=Potri.014G027100.1.v4.1 annot-version=v4.1 MALMLDNCEGILLSLDSHKSVPAPFLTKTYQLVDDPATDHIVSWGEDDTTFVVWRPPEFARDLLPNYFKHNNFSSFVRQLNTYGFRKIVPDRWEFANEFF KKGEKHLLCEIHRRKTAQPQVAINQHHHHQHHPHSPFGVNGPSFFPFSSRTSISPSDSDEQANNNWCDSPPLTSPPRGVASATVIGGGGGYNSSVFALSE DNERLRRSNNMLMSELAHMKKLYNDIIYFVQNHVKPVAPSNSYSSSLLLCGPAPYATANPVTSNGSLAQKPLNQLLGYYPTTAPNNPKQAPQVHVLNSPT TTSQSSLTFLEEANNNGCKTKLFGVPLHSKKRLHPEYGSNPGNMETNKARMVLDKDDLGLNLMPPSRC

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G46264	HSF	SCZ, AT-HSFB4	SCHIZORIZA, heat shock transcr...		Potri.014G027100 [exp]	0	1	Pt-HSFB4.2
AT5G64667		IDL2	inflorescence deficient in abs...		Potri.007G110700 [exp]	1.41	0.8892
AT4G38660			Pathogenesis-related thaumatin...		Potri.004G173200 [exp]	1.41	0.8934
AT2G20515			unknown protein		Potri.002G038200 [exp]	2.82	0.8761
AT1G18650		PDCB3	plasmodesmata callose-binding ...		Potri.015G057800 [exp]	3.00	0.8841
AT2G35585			unknown protein		Potri.008G140000 [exp]	4.24	0.8622
AT1G18670		IBS1	IMPAIRED IN BABA-INDUCED STERI...		Potri.015G061400 [exp]	6.24	0.8470
AT2G39700		ATHEXPALPHA1.6,...	expansin A4 (.1)		Potri.010G202500 [exp]	7.93	0.7782	Pt-EXPA4.2,+E2EXPA15
AT2G34700			Pollen Ole e 1 allergen and ex...		Potri.011G053600 [exp]	8.36	0.8448
AT1G45207			Remorin family protein (.2)		Potri.014G027900 [exp]	8.36	0.8589
AT4G13600			Carbohydrate-binding X8 domain...		Potri.017G055700 [exp]	8.77	0.8518

Compare expression of checked genes

Potri.014G027100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.