Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G49180 503 / 3e-177 RID3 ROOT INITIATION DEFECTIVE 3, Transducin/WD40 repeat-like superfamily protein (.1) AT1G48630 68 / 2e-12 RACK1B_AT receptor for activated C kinase 1B (.1) AT3G18130 67 / 3e-12 RACK1C_AT receptor for activated C kinase 1C (.1) AT1G15440 68 / 8e-12 ATPWP2 \(PERIODIC TRYPTOPHAN PROTEIN 2, periodic tryptophan protein 2 (.1.2) AT1G49450 67 / 8e-12 Transducin/WD40 repeat-like superfamily protein (.1) AT4G02730 66 / 1e-11 AtWDR5b human WDR5 \(WD40 repeat\) homolog b, Transducin/WD40 repeat-like superfamily protein (.1) AT2G47410 67 / 2e-11 WD40/YVTN repeat-like-containing domain;Bromodomain (.1.2) AT1G73720 66 / 2e-11 SMU1 SUPPRESSORS OF MEC-8 AND UNC-52 1, transducin family protein / WD-40 repeat family protein (.1) AT1G11160 66 / 2e-11 Transducin/WD40 repeat-like superfamily protein (.1) AT5G50230 66 / 2e-11 Transducin/WD40 repeat-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G093300 [exp] 245 / 6e-76 AT3G49180 226 / 8e-69 ROOT INITIATION DEFECTIVE 3, Transducin/WD40 repeat-like superfamily protein (.1) Potri.001G384200 [exp] 184 / 2e-53 AT3G49180 125 / 7e-32 ROOT INITIATION DEFECTIVE 3, Transducin/WD40 repeat-like superfamily protein (.1) Potri.001G173500 [exp] 76 / 1e-14 AT1G15440 1342 / 0.0 \(PERIODIC TRYPTOPHAN PROTEIN 2, periodic tryptophan protein 2 (.1.2) Potri.003G060500 [exp] 74 / 6e-14 AT1G15440 1349 / 0.0 \(PERIODIC TRYPTOPHAN PROTEIN 2, periodic tryptophan protein 2 (.1.2) Potri.015G041600 [exp] 69 / 8e-13 AT1G18080 537 / 0.0 RECEPTOR FOR ACTIVATED C KINASE 1 A, Transducin/WD40 repeat-like superfamily protein (.1) Potri.007G009500 [exp] 67 / 3e-12 AT3G49660 469 / 4e-168 human WDR5 \(WD40 repeat\) homolog a, Transducin/WD40 repeat-like superfamily protein (.1) Potri.012G052700 [exp] 67 / 3e-12 AT1G18080 575 / 0.0 RECEPTOR FOR ACTIVATED C KINASE 1 A, Transducin/WD40 repeat-like superfamily protein (.1) Potri.001G306500 [exp] 66 / 9e-12 AT5G64730 489 / 2e-176 Transducin/WD40 repeat-like superfamily protein (.1) Potri.T125206 [exp] 66 / 2e-11 AT5G13480 759 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10013988 [exp] 614 / 0 AT3G49180 471 / 4e-160 ROOT INITIATION DEFECTIVE 3, Transducin/WD40 repeat-like superfamily protein (.1) Lus10016759 [exp] 206 / 3e-61 AT3G49180 209 / 2e-62 ROOT INITIATION DEFECTIVE 3, Transducin/WD40 repeat-like superfamily protein (.1) Lus10022454 [exp] 206 / 7e-58 AT5G63420 1223 / 0.0 embryo defective 2746, RNA-metabolising metallo-beta-lactamase family protein (.1) Lus10015407 [exp] 189 / 3e-56 AT3G49180 169 / 3e-49 ROOT INITIATION DEFECTIVE 3, Transducin/WD40 repeat-like superfamily protein (.1) Lus10025732 [exp] 134 / 3e-35 AT3G49180 130 / 7e-34 ROOT INITIATION DEFECTIVE 3, Transducin/WD40 repeat-like superfamily protein (.1) Lus10035930 [exp] 67 / 1e-12 AT3G49180 59 / 6e-10 ROOT INITIATION DEFECTIVE 3, Transducin/WD40 repeat-like superfamily protein (.1) Lus10014674 [exp] 69 / 2e-12 AT4G02730 508 / 0.0 human WDR5 \(WD40 repeat\) homolog b, Transducin/WD40 repeat-like superfamily protein (.1) Lus10006916 [exp] 68 / 2e-12 AT4G02730 506 / 0.0 human WDR5 \(WD40 repeat\) homolog b, Transducin/WD40 repeat-like superfamily protein (.1) Lus10042076 [exp] 69 / 4e-12 AT5G50230 767 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Lus10018081 [exp] 69 / 5e-12 AT5G50230 766 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0186 [poplar] [flax] Beta_propeller PF00400 [poplar] [flax] WD40 WD domain, G-beta repeat
Representative CDS sequence Show only first row Show all	>Potri.014G027200.1 pacid=42762951 polypeptide=Potri.014G027200.1.p locus=Potri.014G027200 ID=Potri.014G027200.1.v4.1 annot-version=v4.1 ATGAACACCAAAATGGAAGAGATTGTCATAGCATCCTCCTCAATCGACGGCGGCATAGGTTGTTGGGACCTCCAAACAGGAACCGAACACCTTCGCTATA AATCCTGCGCCTCCCCTCCTCACGGCCTTATTTCAGTTGGCCGCCGCTTCCTCGCCTCTTCCCAGTTACAGGACCCTAAAGCATCTTCAGGCGCCATCCT CTACTGGTCCTGGTCTAGGCCTCAGGTGGAGGTTAAGTGCTTTCCTGAGGAGCCAATAAAGCCGCTTGTTGCTAATAGTGAAGGAACTTATCTTGTTGGA GGTGGTTTATCTGGGAATATTTACTTTTGGGAGGTTGCTACAGGTAGATTACTTAAGAAATGGCGTGCCCACTACAGGGCTGTCACTTGCTTGGTTTTTA CAGAAGATGATTCTCTTTTGGTTTCTGGTTCTGAGGATGGATCTGTCCGAGTCTGGCCACTTCTCATGATATTTGATGATTATCAAATGGAGCAGGCAAG CCAGCTTTACGAACATAGCTTTCAAGAGCATACTTTGCGCGTCACTGATATAGTAACAGGTTATGGAGGAGGCAATGCAATTATAATTTCAGCTTCCGAG GATCGAACGTGTAAGGTGTGGAGTTTATCTAAGGGGATATTATTAAGAAATATAGTGTTTCCCTCAATAATTGATTCAATTACGTTGGACCCTGGTGAAC ATGTATTCTATGCTGGTGGCAGAGATGGTAAAATACACATTGCTGCGCTCGGTGCTGATAGCTCATCTATCAAAAGTCATTGGTTGCATATCATTGGTTC ATTATCTAGTCACAGTAAGAGTGTAACTTGCTTAGCATATAGTACAAATGGAAATGTCTTGCTTTCTGGATCAGAAGATGGCATGATTCGAGTTTGGGAC CCAAAAACGCATAACATAGTTCGCGTGTTCAAGCATGCAAAAGGTCCTGTAAACAATATCCATGTTCTTAATCGACCAGCTTACTTGAACCCTCGAAGCT TATCAAATGTACAAGCTTCTTCAAGAAGGCATGGATTATCATTACCACCTCCACTCAGTAAATATATCAATACAATGGATGAAAAAGTCATTAGTGCAGC CGTTAATCTCCAGGCTACTTGCAATAACCCTCTAGATGCTTCATGCATCAGCTCTCAAGTGATTAATTGTCAAATCAAAGAACTCCAGCAACAAGGTTCA GCTGCTGCAGCTGAAATGGAGGTGGAGAAGCTAAAGCTTGATTGCACGCAATCGATGCAAATGCTTCAGAGGTGGAAGAAAACGTATGACAACTTGCATG AATTTTGCGTGGACGAGCTTTTAGAGGGGGATAATGTGAAAAGTGCAAATTAG
AA sequence Show only first row Show all	>Potri.014G027200.1 pacid=42762951 polypeptide=Potri.014G027200.1.p locus=Potri.014G027200 ID=Potri.014G027200.1.v4.1 annot-version=v4.1 MNTKMEEIVIASSSIDGGIGCWDLQTGTEHLRYKSCASPPHGLISVGRRFLASSQLQDPKASSGAILYWSWSRPQVEVKCFPEEPIKPLVANSEGTYLVG GGLSGNIYFWEVATGRLLKKWRAHYRAVTCLVFTEDDSLLVSGSEDGSVRVWPLLMIFDDYQMEQASQLYEHSFQEHTLRVTDIVTGYGGGNAIIISASE DRTCKVWSLSKGILLRNIVFPSIIDSITLDPGEHVFYAGGRDGKIHIAALGADSSSIKSHWLHIIGSLSSHSKSVTCLAYSTNGNVLLSGSEDGMIRVWD PKTHNIVRVFKHAKGPVNNIHVLNRPAYLNPRSLSNVQASSRRHGLSLPPPLSKYINTMDEKVISAAVNLQATCNNPLDASCISSQVINCQIKELQQQGS AAAAEMEVEKLKLDCTQSMQMLQRWKKTYDNLHEFCVDELLEGDNVKSAN

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G49180		RID3	ROOT INITIATION DEFECTIVE 3, T...		Potri.014G027200 [exp]	0	1
AT4G32720		ATLA1	La protein 1 (.1.2)		Potri.006G241800 [exp]	1.00	0.8906
AT4G21130		EMB2271	EMBRYO DEFECTIVE 2271, Transdu...		Potri.005G061000 [exp]	3.16	0.8788
AT4G17950	AT-hook		AT hook motif DNA-binding fami...		Potri.001G143500 [exp]	4.24	0.8388
AT3G03920			H/ACA ribonucleoprotein comple...		Potri.019G034900 [exp]	4.89	0.8423
AT4G21130		EMB2271	EMBRYO DEFECTIVE 2271, Transdu...		Potri.007G107900 [exp]	5.65	0.8483
AT3G03060			P-loop containing nucleoside t...		Potri.001G458200 [exp]	5.91	0.8447
AT3G49990			unknown protein		Potri.005G234800 [exp]	6.48	0.8416
AT4G36680			Tetratricopeptide repeat (TPR)...		Potri.007G028400 [exp]	8.36	0.8342
AT3G51800		ATEBP1, ATG2, E...	A. THALIANA ERBB-3 BINDING PRO...		Potri.016G119700 [exp]	8.66	0.8241
AT3G12860			NOP56-like pre RNA processing ...		Potri.015G092900 [exp]	12.64	0.8389	NOP56.1

Compare expression of checked genes

Potri.014G027200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.