Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G42930 530 / 0 alpha/beta-Hydrolases superfamily protein (.1) AT1G56630 495 / 5e-173 alpha/beta-Hydrolases superfamily protein (.1) AT1G45201 482 / 6e-168 AtTLL1 ARABIDOPSIS THALIANA TRIACYLGLYCEROL LIPASE-LIKE 1, triacylglycerol lipase-like 1 (.1.2) AT5G67050 417 / 2e-142 alpha/beta-Hydrolases superfamily protein (.1) AT3G14360 376 / 5e-126 alpha/beta-Hydrolases superfamily protein (.1) AT5G18630 55 / 5e-08 alpha/beta-Hydrolases superfamily protein (.1.2.3) AT1G30370 55 / 6e-08 DLAH DAD1-like acylhydrolase, alpha/beta-Hydrolases superfamily protein (.1) AT5G18640 54 / 8e-08 alpha/beta-Hydrolases superfamily protein (.1) AT1G06250 50 / 2e-06 alpha/beta-Hydrolases superfamily protein (.1) AT2G44810 46 / 3e-05 DAD1 DEFECTIVE ANTHER DEHISCENCE 1, alpha/beta-Hydrolases superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G027400 [exp] 962 / 0 AT5G42930 529 / 0.0 alpha/beta-Hydrolases superfamily protein (.1) Potri.014G027800 [exp] 625 / 0 AT5G42930 519 / 0.0 alpha/beta-Hydrolases superfamily protein (.1) Potri.005G138800 [exp] 529 / 0 AT5G42930 433 / 7e-149 alpha/beta-Hydrolases superfamily protein (.1) Potri.007G044500 [exp] 518 / 0 AT5G67050 502 / 7e-176 alpha/beta-Hydrolases superfamily protein (.1) Potri.003G073800 [exp] 387 / 1e-129 AT3G14360 619 / 0.0 alpha/beta-Hydrolases superfamily protein (.1) Potri.001G161500 [exp] 384 / 2e-128 AT3G14360 633 / 0.0 alpha/beta-Hydrolases superfamily protein (.1) Potri.009G057900 [exp] 58 / 7e-09 AT1G30370 626 / 0.0 DAD1-like acylhydrolase, alpha/beta-Hydrolases superfamily protein (.1) Potri.010G019500 [exp] 55 / 5e-08 AT5G18640 513 / 0.0 alpha/beta-Hydrolases superfamily protein (.1) Potri.001G263200 [exp] 54 / 1e-07 AT1G30370 607 / 0.0 DAD1-like acylhydrolase, alpha/beta-Hydrolases superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10005709 [exp] 547 / 0 AT5G42930 517 / 0.0 alpha/beta-Hydrolases superfamily protein (.1) Lus10042648 [exp] 531 / 0 AT5G42930 514 / 2e-180 alpha/beta-Hydrolases superfamily protein (.1) Lus10005092 [exp] 504 / 6e-177 AT5G42930 490 / 2e-171 alpha/beta-Hydrolases superfamily protein (.1) Lus10009361 [exp] 461 / 1e-159 AT5G42930 478 / 4e-166 alpha/beta-Hydrolases superfamily protein (.1) Lus10037465 [exp] 377 / 2e-126 AT3G14360 584 / 0.0 alpha/beta-Hydrolases superfamily protein (.1) Lus10003925 [exp] 372 / 2e-124 AT3G14360 574 / 0.0 alpha/beta-Hydrolases superfamily protein (.1) Lus10042914 [exp] 58 / 8e-09 AT2G44810 464 / 1e-163 DEFECTIVE ANTHER DEHISCENCE 1, alpha/beta-Hydrolases superfamily protein (.1) Lus10033968 [exp] 56 / 2e-08 AT5G18640 463 / 5e-164 alpha/beta-Hydrolases superfamily protein (.1) Lus10038524 [exp] 56 / 3e-08 AT1G30370 526 / 0.0 DAD1-like acylhydrolase, alpha/beta-Hydrolases superfamily protein (.1) Lus10023281 [exp] 55 / 8e-08 AT1G30370 342 / 2e-113 DAD1-like acylhydrolase, alpha/beta-Hydrolases superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0028 [poplar] [flax] AB_hydrolase PF01764 [poplar] [flax] Lipase_3 Lipase (class 3)
Representative CDS sequence Show only first row Show all	>Potri.014G027500.1 pacid=42762837 polypeptide=Potri.014G027500.1.p locus=Potri.014G027500 ID=Potri.014G027500.1.v4.1 annot-version=v4.1 ATGGCCAATTGCAATGACGAGCACTTCTGTCAAGATAAGTTGTTGCTCGATCCAAAGGAAGCTAGTTTGAAGGAACTCGTTCTTCTCTTATTCTTCTCTG ATGTAAGAAGTAGAAAATTCGTTGACTGCCCCGAAGAGAACCGGCTGAGAGATATTAATCGACGATGGCTAATTTTCATCTCGGTTCTTGTGCAAAAAAT CCTTCTTTCTTGCAGGGAACCCTTGGCTCAAACAGGGCATACTGTAGAGTACTGGTTAAATCTTATCTCAAACAACGGTGGCCTTTTCAAGCTCCTGTTG AATTATTTGAAGGACAAGGTTGTGAGGCCGGATGAATCATCAGCAACGTTCAGATCTGCGGTTGGACATTCTGACTGGAGAGTAGAACTAGACAAGAGTA GCAGACCCGGGGAAATAAAATATAACACTTCCTTGTCTTTGATGGCCGCCAAATTGTCATACGAAAACAAAGCTTTCATCGAAACCATCGTCAAAGATCA TTGGAACATGGAGTTCTTGGGTTCCTACGACTACTGGAACGGGTACCAAGAAAGGGCCTCAACGCAAGCATTATTGTTCCAAGATAAGAAGGTTGACCCA ACCTTAATTGTGGTGGCTTTCAGAGGGACCAACCCATTTGATGCAGATGACTGGACCACAGATGTGGATCTCTCGTGGTATGACCTTCAAGGCATTGGTA AGCTCCATCGTGGCTTCATGAAAGCCCTAGGCCTGCAAGAGAATGGCTGGCCCAAAGAAATTGAACAAGGCAGTGGTCATTCTTATGCATACTACAAAAT TAGACAAATGCTAAGGGACATATTGCTCAAGAATGAGAAGGCAAAATTTATATTAACAGGGCATAGCTTGGGTGGGGCATTGGCTATACTGTTCGTGGGA GTGTTAGCATTACACCAGGAGGCTTGGTTGCTTGAGAGATTGGAAGGGGTTTACACGTTTGGACAGCCCAGAGTAGGAGATGGACAATTTGGGGAATTTA TGGTAGATAAGTTGAAAAGGTATGAAGTAAGGTACATGAGGCATGTCTACAGTAATGACATAGTAACTAGATTGCCCTATGATGACAATCTTCTTTTATT CAAGCATTTCGGTCCCTGCATCTACTTCAATAGCTTCTACAAAGGAAAGGTTATGCAAGAAGAGCCAAACAAGAACTACTTCTCTTTGTTGTTGATACTC CCCAAGTACCTCAATGCTCTCTGGGAGCTTATCAGAAGTTTTATAATCCCTTACCTCCATGGCCAGGACTACAGAGAGAGTTGGTTTATGAGACTGCTAA GGATCGCAGGATTGATAGTTCCCGGAATACCAGAGCATATTCTTCAAGATTATGATAATTCTACCCGGTTGGGATCCCTTCAACTCAAGGATTCTCAGCA AGAACTTCACCAAGAGTAA
AA sequence Show only first row Show all	>Potri.014G027500.1 pacid=42762837 polypeptide=Potri.014G027500.1.p locus=Potri.014G027500 ID=Potri.014G027500.1.v4.1 annot-version=v4.1 MANCNDEHFCQDKLLLDPKEASLKELVLLLFFSDVRSRKFVDCPEENRLRDINRRWLIFISVLVQKILLSCREPLAQTGHTVEYWLNLISNNGGLFKLLL NYLKDKVVRPDESSATFRSAVGHSDWRVELDKSSRPGEIKYNTSLSLMAAKLSYENKAFIETIVKDHWNMEFLGSYDYWNGYQERASTQALLFQDKKVDP TLIVVAFRGTNPFDADDWTTDVDLSWYDLQGIGKLHRGFMKALGLQENGWPKEIEQGSGHSYAYYKIRQMLRDILLKNEKAKFILTGHSLGGALAILFVG VLALHQEAWLLERLEGVYTFGQPRVGDGQFGEFMVDKLKRYEVRYMRHVYSNDIVTRLPYDDNLLLFKHFGPCIYFNSFYKGKVMQEEPNKNYFSLLLIL PKYLNALWELIRSFIIPYLHGQDYRESWFMRLLRIAGLIVPGIPEHILQDYDNSTRLGSLQLKDSQQELHQE

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G42930			alpha/beta-Hydrolases superfam...		Potri.014G027500 [exp]	0	1
AT5G42930			alpha/beta-Hydrolases superfam...		Potri.014G027400 [exp]	2.44	0.9994
AT5G50915	bHLH	bHLH137	basic helix-loop-helix (bHLH) ...		Potri.003G164500 [exp]	4.69	0.9895
AT5G15720		GLIP7	GDSL-motif lipase 7 (.1)		Potri.017G102100 [exp]	5.91	0.9900
AT1G09155		ATPP2-B15	phloem protein 2-B15 (.1)		Potri.013G012600 [exp]	9.48	0.9754
AT5G05600			2-oxoglutarate (2OG) and Fe(II...		Potri.006G101200 [exp]	11.48	0.9906
AT5G05600			2-oxoglutarate (2OG) and Fe(II...		Potri.006G101100 [exp]	14.49	0.9903
AT5G52400		CYP715A1	"cytochrome P450, family 715, ...		Potri.015G145100 [exp]	15.74	0.9898
AT5G37490			ARM repeat superfamily protein...		Potri.012G042600 [exp]	16.61	0.9752
AT1G15950		IRX4, ATCCR1, C...	IRREGULAR XYLEM 4, cinnamoyl c...		Potri.001G045600 [exp]	16.94	0.9808
AT3G11840		PUB24	plant U-box 24 (.1)		Potri.009G016100 [exp]	16.97	0.9898

Compare expression of checked genes

Potri.014G027500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.