Plant FIBer expression Database

Potri.014G028000 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT1G45231 359 / 9e-116 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.2)
AT1G30550 273 / 5e-87 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10009752
[exp]
540 / 0 AT1G45231 363 / 2e-117 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.2)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0063 NADP_Rossmann PF02475 Met_10 Met-10+ like-protein
Representative CDS sequence
>Potri.014G028000.5 pacid=42764037 polypeptide=Potri.014G028000.5.p locus=Potri.014G028000 ID=Potri.014G028000.5.v4.1 annot-version=v4.1
ATGGAAATTGAAGGTGGTGGTGGTGCAGCGATTAGAGCTCTTGGCTCTTTCTTCAAGCTCACTGAAGTCTACATATGGAACGATGGCTCGACGGAGACAC
GAGAAATATCTTTGCTTCCTGAGTCCACTAAATCATCTAGAGACTTGGACGATATTAGCTTCAGCATCCCAGCCTCAACTATTGAAATAAGTGAAATATT
AGAGAATGAACAACTGATCAAACAGATGGATGCATTAGGGCTTCCCTTTTCCTTCTTGTCTAACAAGGAGACGAGCAACAAAATGAAGAAAAGCAAAAGG
AGAGGTGCTCGCTTGAAGCATTCCCGTAGTCATAAAGAAGCCAAGGAAGAAGCATTAGAATTTACCCAAGTGAGTGGGTTGGAGATTGTATCTCCTTCTG
TTTTGAATGATAGCACAAGCAATTCCTTATGTTGCATGTCAATGATGGGCCAAAGTGAATCCTGTTTTTATGATGTTGCAGTGGGTATCGATGAAACTGA
ATGCCCCACTGGTGATTCAGCAAGTTCGACTAAGATTATTTCTGGTGCTGTCAGGGAGAAAAACCTTGGGGGGACATCTCACTGTCTGTCTAATGCTGGC
CATGAATACGAGTCTGTACCACACAATGATGTTATGTCCAAGGATGATGATAATGGAGGACAAAGTTTGAGCAATTCAGATGGTGCACCTCCAGGAGTGT
GCTGTCTAACAGATGCAGGTGTCAACCATGGTGAGAAGGAAATTGCCAACAGGTTGATGGAGTATGAGTGTCTAGAAGAGTCATCTGCTGCTAACCATCA
TGAAGAAGGTGATAAGTTTTGCAATGATAGTGGCACAGAGCATTTGGGGATTTCTGAACCTGCTGAGTTCTCTCAGAGTTCAGAAGTGGTTGGACATGGT
GAAATAGACAGTTATAACTACTATGGTGATTTTGGAGATTGGGGGGTGTATTGGGACTCTCTGTACATGAGATATTACTTCCACAATGTCAAAACAGACA
CTTGTACATGGTATCCACCCCCTGGTATGGAACATCTAGCATCTGGCGATATCACTGATGAATTGAATGAAGCAACTGCTGAAGTGACTGAAATGGATGG
AGGGCCTTCCTTTTCCTGCAGTTCACTTAATTATCACGAGACATCTGAGGGACCACCAAATGATGAGAGCTGTTTAAATAAATCATCCGATGAAGTTTCG
ATGGAGATTGGAGTTGCAACTGGCAACTCCATGCCTGGTTTAACTATAGTCCCTGCAAATGGAAGTTTTGAGCATGCAGATGAATGTCTTGTCAATGGAA
GTTGTGATGATGAAGTTGCATTGCACTTACCATCAGCTGTGCAGGAGTGTATGGACGGCCTGATGAGTACAGTCACGGAAGAAGTTACTGAGGAGAGTGA
TATCTATCTTGAAATTGCTGATCCCGCAACTGATAATTTGGATATCCAGCTTAACCCTGCCATCAGAAAACCAAAAAAGAAAGAGAAAAAAACACGAGTC
CATAAGAAATCATCAATGAATAGTGAAGACCTTCAAAGTGAGCAGATGTTTGAAGAGTTTTCTTCAAACATCGCCAAATATTGGTGTCAAAGGTACACCT
TATTTTCCAGATTTGATGATGGTATAAGAATGGATGAAGAAGGATGGTTTTCTGTTACACCAGAGCCTATAGCCAAGCATCATGCATTGCGTTGTATGGG
GGACACCATAATTGACTGTTTCACTGGTGTTGGTGGAAATGCCATTCAATTTGCACAGAGGTACAAACATGTCATCGCAATTGATATTGATCCGAAGAAG
ATTGATTATGCATTTCACAATGCTTCCATCTATGGAGTTAGTGATCAAATAGACTTTATAGAAGGGGACTTTTTTGCTTTGGCATCAAAACTGAAGGCAG
ACAGTGTCTTCTTGTCACCTCCTTGGGGAGGACCTGCATATTCTAAAGTAAAGACTTACAACATCAAGACCATGCTTAAGCCACGTGATGGATATTCTCT
CTTTAACACTGCAAAGCAAATTGGTCATAGAATCATCATGTTTCTCCCGAGAAATATTGACCTCAACCAATTGGCAGAGTTGTGTTTAACTTCCAATCCT
CCATGGTCACTAGAGGTTGAGAAGAACTTTATGAATGGCAAGTTGAAGGCAATAACTGCTTACTTCAGCAACACGGTGATTGAAGGACAATAA
AA sequence
>Potri.014G028000.5 pacid=42764037 polypeptide=Potri.014G028000.5.p locus=Potri.014G028000 ID=Potri.014G028000.5.v4.1 annot-version=v4.1
MEIEGGGGAAIRALGSFFKLTEVYIWNDGSTETREISLLPESTKSSRDLDDISFSIPASTIEISEILENEQLIKQMDALGLPFSFLSNKETSNKMKKSKR
RGARLKHSRSHKEAKEEALEFTQVSGLEIVSPSVLNDSTSNSLCCMSMMGQSESCFYDVAVGIDETECPTGDSASSTKIISGAVREKNLGGTSHCLSNAG
HEYESVPHNDVMSKDDDNGGQSLSNSDGAPPGVCCLTDAGVNHGEKEIANRLMEYECLEESSAANHHEEGDKFCNDSGTEHLGISEPAEFSQSSEVVGHG
EIDSYNYYGDFGDWGVYWDSLYMRYYFHNVKTDTCTWYPPPGMEHLASGDITDELNEATAEVTEMDGGPSFSCSSLNYHETSEGPPNDESCLNKSSDEVS
MEIGVATGNSMPGLTIVPANGSFEHADECLVNGSCDDEVALHLPSAVQECMDGLMSTVTEEVTEESDIYLEIADPATDNLDIQLNPAIRKPKKKEKKTRV
HKKSSMNSEDLQSEQMFEEFSSNIAKYWCQRYTLFSRFDDGIRMDEEGWFSVTPEPIAKHHALRCMGDTIIDCFTGVGGNAIQFAQRYKHVIAIDIDPKK
IDYAFHNASIYGVSDQIDFIEGDFFALASKLKADSVFLSPPWGGPAYSKVKTYNIKTMLKPRDGYSLFNTAKQIGHRIIMFLPRNIDLNQLAELCLTSNP
PWSLEVEKNFMNGKLKAITAYFSNTVIEGQ

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT1G45231 S-adenosyl-L-methionine-depend... Potri.014G028000
[exp]
0 1
AT5G53220 unknown protein Potri.015G022500
[exp]
1.41 0.8462
AT2G26790 Pentatricopeptide repeat (PPR)... Potri.010G243002
[exp]
2.23 0.8530
AT1G33050 unknown protein Potri.001G452300
[exp]
3.87 0.8281
AT4G23840 Leucine-rich repeat (LRR) fami... Potri.001G092000
[exp]
7.07 0.8238
AT2G15980 Tetratricopeptide repeat (TPR)... Potri.009G110400
[exp]
12.16 0.8258
AT1G03750 SWI2, SNF2, CHR... CHROMATIN REMODELING 9, switch... Potri.017G012400
[exp]
17.00 0.8093 CHR912
AT2G22010 RKP related to KPC1 (.1.2) Potri.007G081900
[exp]
18.16 0.8137
AT1G14200 RING/U-box superfamily protein... Potri.019G086601
[exp]
19.07 0.7834
AT5G13230 Tetratricopeptide repeat (TPR)... Potri.001G062566
[exp]
19.13 0.8218
AT4G11560 bromo-adjacent homology (BAH) ... Potri.003G127400
[exp]
20.39 0.8192

Potri.014G028000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.