Plant FIBer expression Database

Potri.014G028100 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT5G42920 827 / 0 AtTHO5 THO complex, subunit 5 (.1.2)
AT1G45233 470 / 3e-159 AtTHO5 THO complex, subunit 5 (.2)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.002G125300
[exp]
417 / 7e-139 AT5G42920 318 / 6e-102 THO complex, subunit 5 (.1.2)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10006490
[exp]
872 / 0 AT5G42920 868 / 0.0 THO complex, subunit 5 (.1.2)
Lus10009754
[exp]
868 / 0 AT5G42920 889 / 0.0 THO complex, subunit 5 (.1.2)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
PF09766 FmiP_Thoc5 Fms-interacting protein/Thoc5
Representative CDS sequence
>Potri.014G028100.1 pacid=42762571 polypeptide=Potri.014G028100.1.p locus=Potri.014G028100 ID=Potri.014G028100.1.v4.1 annot-version=v4.1
ATGGAGGACGGCGAGATAGTGGAGGCAGTGGCAATGGAAGAAGACATGCAATTCTCTTCCTACGAATCACTCAAAGAAACCAAATCCTCTGTAGAGGAAA
TCATTTCCCAACTCCTCTCTATGAAAAGAGAGTCCAAATCCAAATCTCAACTCCCCGAATTCATCGCTCAAATGTTCCTCAACTTCGTCAATCTCCGCCA
GGTCAATAGGTCGATTTTGCTAGAGGAAGATAAAGTGAAAGCGGAGACGGAGAAAGCAAAAGCTCCGGTGGACTTTACGACTTTGCAGTTACATAATTTG
ATGTATGAGAAGAGCCATTATCTTAAAGCTATAAAAGCTTGTAAGGATTTTAGATCTAAATATCCTGATATTGAACTTGTAAATGAAGATGAGTTTTTTC
GCGATGCTCCTCAGCATATTAAAGGGTCAAATTTGTCTACTGATACTTCGCATAATTTGATGCTGAAGAGACTAAATTACGAGCTTCATCAGAGAAAAGA
GCTGTGTAAGTTGCGTGAGAAACTGGAACAGAAGAAGAAAGGTTTGTTGGAGACTATTGCGAATAGGAAGAAGTTCTTGTTGAGTTTGCCGTCGCATCTT
AAATCGCTTAAGAAAGCTTCATTGCCAGTACAGAATCAGTTAGGGGTTCTGCATACCAAGAAATTAAAGCAGCATAACTTGGCGGAGTTACTTCCGCCTC
CACTTTATGTGATTTACTCGCAGTTGTTGGCGCAAAAGGAAGCATTTGGAGAATGTATTGATCTGGAGGTGGTGGGAAGTGTTAAAGATGCTCAATCATT
TGCTCGTCAGCAAGCGAATAAGGACAGCAGTATATCTACCAATGTAGAGACTTCCAGGTTGGAGGACGATGCACCTGATGAGGAAGATGATGGTCAAAGA
AGGAGAAAGAGGCCAAAGAGGGTTCAAAGCAAAGAGGGCGTTGATCAGGCAGGATCATATCAAGCTCATCCGCTCAAGGTTTTTCTCCATATATTTGACG
ATGAGGTTTCTGATCCAAAATCTGCGAAGCTCATTACTCTGAAGTTTGAATACTTGCTGAAGTTGAATGTTGTATGTGTTGGGGTTGAAGGGTCACTTGA
AGGACCAGAAAATAACATCTTATGCAACTTATTTCCCAATGACACTGGAGCTGAGCTGCCTCAGCAGTCAGCAAAGCTCATTGTAGGTGACAACCTTGCA
TTTGATGAAAGGAGAACTTCACGTCCATATAAGTGGGTCCAGCATTTGGCAGGAATTGATTTCTTACCAGAGACAGCCCCGTTACTCGGCGACCTTGAAA
CTGCAAGCAGTGAAACTGCTAAAAACGAGATTGTTTTATCTGGATTGTCACTGTATCGCCAACAGAATCGGGTGCAGACAGTTGTGCAAAGAATTCGCTC
TCGGAAAAGGGCTCAGCTGGCTCTTGTGGAACAACTTGAATCGCTTATGAAGCTTGAATGGCCTCCTCAGAATTGTGAAAGTGTTCCATGGGTTTTGCAT
ACACCTTTATGCAATTTACATGGCTGGTCGCCAGCAGGGCCTCCACCTAATCAAGCTTCAACTTTGGCTGTTACTGATACGAATATAGTTCAGGAACCAA
TAGATGTCAATATGGATGGAAGATTGGAGAGTGCTAGGGAAGATGGGGAGCTTCCATCTCTAATTGCAGCTGCTTCTGCTGTGAATGATGTTAAGCTTAC
TCCAAAAGTATCTACTCTAGAGCATTCCAGGCAGCTGAGTTTAATGTCGAAGAGCATTATATCACCAATTAGTAAGGTGAAATCACAAAGTTTCAAGAAA
CATGATGAAGATTTTGATCTCTTGCTGGATACTGATAGTGATTTGGACGAGCTTTCACAAATTGAGCCAGAGGGAGAAACCGACGCTTCTATTAAATACA
ATGAAATGGCTGAAAAGTCATGGGTGGATTATGGGGTTAAAGAATATACTCTTGTCTTAATAAGGAAAAAGGATGACGGAGAGAAGAAAGTAAAGTTAGA
AGCAAAGGTTAAAATCAGCATGGAGTATCCTCTTAGGCCTCCTCTCTTTGGCTTGAGTCTGTACAGTGCTGCAGAAAATCATGATGAGAATAATGGCTCT
GAACGGTACAATGAACTTCGAGCCATGGAAGCTGAGGTAAATCTTTATATATTAAAGCTGCTACCTTTGGATCAAGAAAATCATGTCTTAGCTCATCAAG
TGCGCTATCTTGCAATGTTGTTTGACTATTTAATGGATGAGGCATCTCCAAGTGCAAAATGTACTTCTGTTGTCGATGTTGGCTTGTGTAAACCAGTTAG
TGGTAGTCTTCTTGCTAGATCATTTAGAGGGAGGGATCGCAGGAAGATGATATCCTGGAAGGACATGGAATGCACCTCTGGCTACCCATACTAG
AA sequence
>Potri.014G028100.1 pacid=42762571 polypeptide=Potri.014G028100.1.p locus=Potri.014G028100 ID=Potri.014G028100.1.v4.1 annot-version=v4.1
MEDGEIVEAVAMEEDMQFSSYESLKETKSSVEEIISQLLSMKRESKSKSQLPEFIAQMFLNFVNLRQVNRSILLEEDKVKAETEKAKAPVDFTTLQLHNL
MYEKSHYLKAIKACKDFRSKYPDIELVNEDEFFRDAPQHIKGSNLSTDTSHNLMLKRLNYELHQRKELCKLREKLEQKKKGLLETIANRKKFLLSLPSHL
KSLKKASLPVQNQLGVLHTKKLKQHNLAELLPPPLYVIYSQLLAQKEAFGECIDLEVVGSVKDAQSFARQQANKDSSISTNVETSRLEDDAPDEEDDGQR
RRKRPKRVQSKEGVDQAGSYQAHPLKVFLHIFDDEVSDPKSAKLITLKFEYLLKLNVVCVGVEGSLEGPENNILCNLFPNDTGAELPQQSAKLIVGDNLA
FDERRTSRPYKWVQHLAGIDFLPETAPLLGDLETASSETAKNEIVLSGLSLYRQQNRVQTVVQRIRSRKRAQLALVEQLESLMKLEWPPQNCESVPWVLH
TPLCNLHGWSPAGPPPNQASTLAVTDTNIVQEPIDVNMDGRLESAREDGELPSLIAAASAVNDVKLTPKVSTLEHSRQLSLMSKSIISPISKVKSQSFKK
HDEDFDLLLDTDSDLDELSQIEPEGETDASIKYNEMAEKSWVDYGVKEYTLVLIRKKDDGEKKVKLEAKVKISMEYPLRPPLFGLSLYSAAENHDENNGS
ERYNELRAMEAEVNLYILKLLPLDQENHVLAHQVRYLAMLFDYLMDEASPSAKCTSVVDVGLCKPVSGSLLARSFRGRDRRKMISWKDMECTSGYPY

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT5G42920 AtTHO5 THO complex, subunit 5 (.1.2) Potri.014G028100
[exp]
0 1
AT3G55200 AtSAP130a Arabidopsis thaliana spliceoso... Potri.010G212100
[exp]
1.73 0.8761
AT1G17210 ATILP1 ARABIDOPSIS IAP-LIKE PROTEIN, ... Potri.011G081200
[exp]
1.73 0.8524
AT4G31980 unknown protein Potri.003G209500
[exp]
6.00 0.8662
AT4G31980 unknown protein Potri.003G208300
[exp]
7.21 0.8493
AT3G54440 glycoside hydrolase family 2 p... Potri.001G027400
[exp]
7.48 0.8420
AT2G37330 ALS3 aluminum sensitive 3 (.1) Potri.006G215700
[exp]
13.11 0.7928
AT3G45880 2-oxoglutarate (2OG) and Fe(II... Potri.001G233200
[exp]
13.26 0.7911
AT1G71210 Pentatricopeptide repeat (PPR)... Potri.004G229100
[exp]
16.97 0.8153
AT3G14470 NB-ARC domain-containing disea... Potri.001G379700
[exp]
17.23 0.8401
AT3G26430 GDSL-like Lipase/Acylhydrolase... Potri.001G074400
[exp]
18.46 0.8332 ENOD8.2

Potri.014G028100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.