Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G45230 221 / 4e-73 Protein of unknown function (DUF3223) (.1), Protein of unknown function (DUF3223) (.2) AT3G46630 115 / 7e-32 Protein of unknown function (DUF3223) (.1) AT2G40030 96 / 7e-23 NRPE1, DMS5, ATNRPD1B, DRD3, NRPD1b DEFECTIVE IN MERISTEM SILENCING 5, nuclear RNA polymerase D1B (.1) AT1G63020 47 / 3e-06 SMD2, PolIVa, SDE4, NRPD1a SILENCING MOVEMENT DEFICIENT 2, NUCLEAR RNA POLYMERASE D 1A, nuclear RNA polymerase D1A (.1.2) AT5G62440 45 / 7e-06 Protein of unknown function (DUF3223) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G125700 [exp] 296 / 7e-103 AT1G45230 210 / 6e-69 Protein of unknown function (DUF3223) (.1), Protein of unknown function (DUF3223) (.2) Potri.014G023400 [exp] 121 / 2e-34 AT3G46630 218 / 1e-72 Protein of unknown function (DUF3223) (.1) Potri.014G023200 [exp] 121 / 2e-34 AT3G46630 194 / 6e-63 Protein of unknown function (DUF3223) (.1) Potri.003G196900 [exp] 109 / 2e-27 AT2G40030 1843 / 0.0 DEFECTIVE IN MERISTEM SILENCING 5, nuclear RNA polymerase D1B (.1) Potri.001G027232 [exp] 102 / 4e-25 AT2G40030 1596 / 0.0 DEFECTIVE IN MERISTEM SILENCING 5, nuclear RNA polymerase D1B (.1) Potri.001G111300 [exp] 59 / 4e-10 AT1G63020 1443 / 0.0 SILENCING MOVEMENT DEFICIENT 2, NUCLEAR RNA POLYMERASE D 1A, nuclear RNA polymerase D1A (.1.2) Potri.005G033100 [exp] 51 / 9e-08 AT5G62440 181 / 2e-57 Protein of unknown function (DUF3223) (.1) Potri.013G021800 [exp] 44 / 2e-05 AT5G62440 156 / 9e-49 Protein of unknown function (DUF3223) (.1) Potri.013G022500 [exp] 44 / 3e-05 AT5G62440 148 / 7e-45 Protein of unknown function (DUF3223) (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10006488 [exp] 200 / 6e-65 AT1G45230 195 / 8e-63 Protein of unknown function (DUF3223) (.1), Protein of unknown function (DUF3223) (.2) Lus10009756 [exp] 195 / 6e-63 AT1G45230 193 / 3e-62 Protein of unknown function (DUF3223) (.1), Protein of unknown function (DUF3223) (.2) Lus10018738 [exp] 122 / 1e-34 AT3G46630 201 / 1e-65 Protein of unknown function (DUF3223) (.1) Lus10024797 [exp] 122 / 2e-34 AT3G46630 201 / 9e-66 Protein of unknown function (DUF3223) (.1) Lus10002748 [exp] 113 / 9e-29 AT2G40030 1773 / 0.0 DEFECTIVE IN MERISTEM SILENCING 5, nuclear RNA polymerase D1B (.1) Lus10016332 [exp] 111 / 4e-28 AT2G40030 1086 / 0.0 DEFECTIVE IN MERISTEM SILENCING 5, nuclear RNA polymerase D1B (.1) Lus10006339 [exp] 54 / 2e-08 AT1G63020 1343 / 0.0 SILENCING MOVEMENT DEFICIENT 2, NUCLEAR RNA POLYMERASE D 1A, nuclear RNA polymerase D1A (.1.2) Lus10002955 [exp] 53 / 5e-08 AT1G63020 1326 / 0.0 SILENCING MOVEMENT DEFICIENT 2, NUCLEAR RNA POLYMERASE D 1A, nuclear RNA polymerase D1A (.1.2) Lus10021669 [exp] 47 / 2e-06 AT5G62440 180 / 1e-57 Protein of unknown function (DUF3223) (.1) Lus10035009 [exp] 47 / 3e-06 AT5G62440 179 / 5e-57 Protein of unknown function (DUF3223) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF11523 [poplar] [flax] DUF3223 Protein of unknown function (DUF3223)
Representative CDS sequence Show only first row Show all	>Potri.014G028300.1 pacid=42764739 polypeptide=Potri.014G028300.1.p locus=Potri.014G028300 ID=Potri.014G028300.1.v4.1 annot-version=v4.1 ATGGCCATGGCTTCGTTATCTAAACCACAACCATCGCTATCCCTACCCGCTCTCTCAAACCCTATCTCTTTGTTTTCCTCTCCGGCAGTGGTGTTATCTT TTCCGTTTAATCGAACTGCTTTCGCTAGTCCACGTTTGTTCGCAATTAAGACAGGATCAGACGGTTCAGATTTGCTGAGAAAACCGATTGTACCGTCAGA GAAGGACTTGGTTGGAATTTCTGAAGAAGTAGAGGACAGTGAAGAGGAAAAGGAGGAAGGATTTGTGGATTGGGAGGACCGGATTTTGGAGGATACTGTC CCTCTTGTTGGGTTTGTTAGAATGATTCTTCATTCTGGAAAATATGAAAGTGGAGATAGATTGAGTCCAGATCATGAAAGAACTATTGTGGATAGATTGC TTGCATACCATCCAGATTGTGATAGCAAGATTGGATGTGGAATCGATTATATTACAGTTGGGTATCATCCTGATTTTGTAGAATCGCGATGTTTGTTCAT AGTTCGAAAAGATGGCCAATTGGTTGACTTTTCTTATTGGAAATGCATAAAGGGCTTGATCAAGAAGAACTATCCACTATATGCAGACAGTTTCATTCTC AGACATTTCCGACGGCGGAGAAGGAGTTGA
AA sequence Show only first row Show all	>Potri.014G028300.1 pacid=42764739 polypeptide=Potri.014G028300.1.p locus=Potri.014G028300 ID=Potri.014G028300.1.v4.1 annot-version=v4.1 MAMASLSKPQPSLSLPALSNPISLFSSPAVVLSFPFNRTAFASPRLFAIKTGSDGSDLLRKPIVPSEKDLVGISEEVEDSEEEKEEGFVDWEDRILEDTV PLVGFVRMILHSGKYESGDRLSPDHERTIVDRLLAYHPDCDSKIGCGIDYITVGYHPDFVESRCLFIVRKDGQLVDFSYWKCIKGLIKKNYPLYADSFIL RHFRRRRRS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G45230			Protein of unknown function (D...		Potri.014G028300 [exp]	0	1
AT1G32220			NAD(P)-binding Rossmann-fold s...		Potri.001G136900 [exp]	3.74	0.9747
AT3G55400		OVA1	OVULE ABORTION 1, methionyl-tR...		Potri.010G207300 [exp]	5.65	0.9726
AT3G17170		RFC3	REGULATOR OF FATTY-ACID COMPOS...		Potri.008G101900 [exp]	5.74	0.9708	Pt-RFC3.1
AT3G54360			zinc ion binding (.1)		Potri.003G189400 [exp]	12.00	0.9560
AT5G46420			16S rRNA processing protein Ri...		Potri.001G353800 [exp]	12.64	0.9658
AT3G63490		EMB3126	EMBRYO DEFECTIVE 3126, Ribosom...		Potri.001G262400 [exp]	14.83	0.9681	RPL1.2
AT1G09130			ATP-dependent caseinolytic (Cl...		Potri.013G017166 [exp]	15.49	0.9658
AT4G18740			Rho termination factor (.1.2.3...		Potri.011G069300 [exp]	15.87	0.9505
AT3G10970			Haloacid dehalogenase-like hyd...		Potri.019G049000 [exp]	16.73	0.9511
AT1G01970			Tetratricopeptide repeat (TPR)...		Potri.014G070500 [exp]	17.94	0.9497

Compare expression of checked genes

Potri.014G028300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.