Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G29120 360 / 4e-110 ATGLR2.7 GLUTAMATE RECEPTOR 2.7, glutamate receptor 2.7 (.1) AT2G29100 349 / 5e-106 ATGLR2.9 GLUTAMATE RECEPTOR 2.9, glutamate receptor 2.9 (.1) AT5G11210 333 / 3e-101 ATGLR2.5 ARABIDOPSIS THALIANA GLU, glutamate receptor 2.5 (.1) AT5G27100 334 / 6e-101 ATGLR2.1 ARABIDOPSIS THALIANA GLUTAMATE RECEPTOR 2.1, glutamate receptor 2.1 (.1) AT2G29110 333 / 4e-100 ATGLR2.8 glutamate receptor 2.8 (.1) AT2G24720 319 / 5e-95 ATGLR2.2 glutamate receptor 2.2 (.1) AT3G51480 318 / 1e-94 ATGLR3.6 glutamate receptor 3.6 (.1) AT2G24710 311 / 1e-92 ATGLR2.3 glutamate receptor 2.3 (.1) AT4G35290 306 / 2e-90 ATGLUR2, ATGLR3.2, GLUR2 GLUTAMATE RECEPTOR 3.2, glutamate receptor 2 (.1.2) AT4G31710 305 / 6e-90 ATGLR2.4 ARABIDOPSIS THALIANA GLUTAMATE RECEPTOR 2.4, glutamate receptor 2.4 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G028800 [exp] 1029 / 0 AT5G11210 360 / 3e-112 ARABIDOPSIS THALIANA GLU, glutamate receptor 2.5 (.1) Potri.004G052400 [exp] 512 / 7e-168 AT2G29100 429 / 3e-135 GLUTAMATE RECEPTOR 2.9, glutamate receptor 2.9 (.1) Potri.004G052500 [exp] 506 / 2e-165 AT2G29100 445 / 3e-141 GLUTAMATE RECEPTOR 2.9, glutamate receptor 2.9 (.1) Potri.001G374600 [exp] 486 / 7e-159 AT2G29120 452 / 9e-145 GLUTAMATE RECEPTOR 2.7, glutamate receptor 2.7 (.1) Potri.001G374300 [exp] 478 / 9e-156 AT2G29120 422 / 1e-133 GLUTAMATE RECEPTOR 2.7, glutamate receptor 2.7 (.1) Potri.004G052600 [exp] 478 / 6e-155 AT2G29100 392 / 3e-121 GLUTAMATE RECEPTOR 2.9, glutamate receptor 2.9 (.1) Potri.001G374700 [exp] 471 / 7e-153 AT2G29120 446 / 1e-142 GLUTAMATE RECEPTOR 2.7, glutamate receptor 2.7 (.1) Potri.011G062900 [exp] 472 / 2e-152 AT5G11210 436 / 3e-139 ARABIDOPSIS THALIANA GLU, glutamate receptor 2.5 (.1) Potri.001G375100 [exp] 468 / 5e-152 AT2G29120 419 / 3e-132 GLUTAMATE RECEPTOR 2.7, glutamate receptor 2.7 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10013952 [exp] 401 / 2e-126 AT2G29120 377 / 1e-116 GLUTAMATE RECEPTOR 2.7, glutamate receptor 2.7 (.1) Lus10038670 [exp] 403 / 2e-123 AT3G10490 441 / 5e-143 Arabidopsis NAC domain containing protein 51, NAC domain containing protein 52 (.1.2) Lus10013976 [exp] 387 / 7e-121 AT2G29110 372 / 1e-114 glutamate receptor 2.8 (.1) Lus10026235 [exp] 382 / 1e-117 AT2G29120 912 / 0.0 GLUTAMATE RECEPTOR 2.7, glutamate receptor 2.7 (.1) Lus10003436 [exp] 341 / 6e-103 AT2G29120 867 / 0.0 GLUTAMATE RECEPTOR 2.7, glutamate receptor 2.7 (.1) Lus10026913 [exp] 320 / 6e-96 AT2G29120 790 / 0.0 GLUTAMATE RECEPTOR 2.7, glutamate receptor 2.7 (.1) Lus10012245 [exp] 316 / 1e-93 AT1G42540 1258 / 0.0 glutamate receptor 3.3 (.1) Lus10016031 [exp] 308 / 4e-91 AT1G42540 1123 / 0.0 glutamate receptor 3.3 (.1) Lus10039671 [exp] 308 / 8e-91 AT1G05200 1239 / 0.0 glutamate receptor 3.4 (.1.2) Lus10027171 [exp] 306 / 4e-90 AT1G05200 1243 / 0.0 glutamate receptor 3.4 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0030 [poplar] [flax] Ion_channel PF00060 [poplar] [flax] Lig_chan Ligand-gated ion channel CL0177 [poplar] [flax] PBP PF00497 [poplar] [flax] SBP_bac_3 Bacterial extracellular solute-binding proteins, family 3 CL0144 [poplar] [flax] Periplas_BP PF01094 [poplar] [flax] ANF_receptor Receptor family ligand binding region
Representative CDS sequence Show only first row Show all	>Potri.014G028500.2 pacid=42763676 polypeptide=Potri.014G028500.2.p locus=Potri.014G028500 ID=Potri.014G028500.2.v4.1 annot-version=v4.1 ATGTCTCCTCTCCTCTTCTTTTTCCTGGTTCTGCCGCTACTGTTAGAATCAAAAGCTAAGGCGATCGAGGCAGGAGATAACTGTTCACTGATCACCCATC AGATAACGGGGAAGATTGGTGGGGTTATCAATTATAGTTCTCGTTTAGGCAAGGAGCAGAAAGTAGCAATGGAGATGGCTGTTGAAGACTATTTTCGTTC AAGTTGCTCTAAGCAGCTAACTCTGCAACTTGAAGATTCAGGTGGAGACTCATCTAGAGTTGCCTCTGCAACAACTGAGCTCATTAGTAGCAAACGAGTC CAATCGATAATCGGGGCAATGACAGCACAAGAAACTGGTCTATTTTCGGAGGTTGATATGAACATGAAGAACATTCCTATTATATCCCTGACTTCGCCTG CAATAACTCCACCATCGATGCCACATCAATTGCCGTATTTCCTACAAATGAGTAACCATATAACCCTCCACATGCAATGCATAGTTGACATAGTAGGCCA CTTCAAGTGGAGGAAAGTGACAGCACTGTACGAACACAAAAATGGTTTCTCTGCTTATTCTGGGATTATAACTCTCCTATCTGACAAGCTTAAAGTTGTC AACTCAGAGATTTCATACCACTCAGATCTCTCTTCCCTGTCTTCTATATCAAACCCAGAAATCACCATTGAACAAGAGCTTATCAAGCTGAGGAGCAAAA GCAATAGGGTCTTCATAGTTTTAGTATCCTCCTTGGAATTGGCTATCCTGCTCTTTGAGAAGGCAAATCAAATGCGGATGATGGAGAAAGATTATGTATG GATTGTCACAGATGAGATTGCAAGCCTTCTCGACTCTGTTGATTCCTCTGTCGTGAACAACATGCAAGGCGTGATTGGTTTCAAGACAAACTTCGCACGC ACTCGTGACACTTTTAAACGTTTTAAATCTAGATTTCGAAAGAAGTATGGATCAAAGTATCCAGAAGAAGAAGAATATTCTAATCCAAGTATCTTTGCAC TCCGCGCATATGATGCCACTTGGGCTATTGCTCGAGCTATGGAGAAATCGCAGGGCAAAATAACCTCAAAAGAATTATCTGGGAACATTTTATCCAGTAA TTTTGAAGGTCTAAGTGGCACCGTGAGGTTTGAAAACAATGTATTATGGCAATCGCCATCGTTTCAGATCATTAACGTTGTTGGTAACAGCTACAGAGTG ATGGCAGTTTGGTCACCAAAATTTGGATTTTCGCAGAGTGAAGAGAAATATAATGGAGCGACTGCCAACGGTTCTTTGAAAAACTTGGGTCCAGTTTATT GGCCAGGTGGAATGCCAAGCACAAACCCAAGAGGATGGGCGATATCTGATGCAGATATCCCATTGAAGATAGGGGTTCCTGCTATGGGTGCTTTCAAACA ATTCGTGAGGGTGACTTTTGATCAGACCCAGAATGCAACTTGTGTAACCGGGTTCACAATCAATGTATTTGAAGCAGTAGTCAAGCGCCTGCCTTATAAC TTGCCTTATGTGTTAGTTCCCTTTTATGGAACATACGATGAGATGGTGGAGCAAGTTTATCGCAATGGCCTGGACGCAGCTGTTGGCGATACAGAGATAA TGGCAGATCGATTTCAGTACGTAGAATTTTCGCAGCCATATGTTGATTCCGGACTTGTTATGGTAGTAACTCAGAAAGCAGAAACATCGCACGCAACATG GATGCTGAAAACCTTTACGAAAAAATTGTGGCTGCTTATGATAGCAATGCATGTGTTCATAGGGTTGCTAGTATGGCTAATTGAACGTGGGAACAACACT GAATTTGATGGGATCGGGACAATGCTATGGTTTTCGGTTACCATAATATTCTACGCACATCGACAACCGCTCACAAGCAACTTATCTCGATTAGTGTTGA CACCATGGCTATTTGTGATTCTCATTGTCGTGGCAAGTTTTACAGCTAGCCTTTCGTCGGCAATGACAGTCTCACGGCTCGAACCATCAGTGTTGGATAT TGAAACACTTCAAAGAACAAATGCACCTGTTGGTTGCAATGGGAACTCCTTTATTGTAAGATATTTGATTAATGTTTTGCTTTTCAAACCAGAGAACATA AAGAAGATTAATTCAATACATGATTACCCAGAAGCCTTTGAAACTGGATATGTTAAAGCAGCATTCTTTGTGGAGCCTCATGCAAGAGTCTTCCTTGGAA AATACTGCAAAGGTTACACCAAAGCAGGACCTACCCTCAAGCTCGGCGGTTTTGGCTTTGTGTTTCCAAAGGGTTCACCTCTGGCTTTTGACATCTCGGA GGCAACCCTCAAAGTTATAGAGAGTGGAGAATTGCGCCAGTTAGAGGAGTTGCTCTCCTCTTCTAATTGCACCTCTCGAACTACCGCAATTGACACCTCA AGTTTAGGCCTGGAACCTTTTGCTGGTCTATTTATATTGTCAGGTACCATTGCAGCCTTCGGATCCCTCGTTGCCATTTTTCGTCTGGGTAGGAATTTGC ACATCTTGAGTTACATTCAAACAGAACTCACAAGAAGAAGAATTTGGAGATGGGCAAGTCTTCAATTGTCAAGAAAAAGTTCTACCAAGGAGATTTCTTC GACCCAAGCGTGTTGA
AA sequence Show only first row Show all	>Potri.014G028500.2 pacid=42763676 polypeptide=Potri.014G028500.2.p locus=Potri.014G028500 ID=Potri.014G028500.2.v4.1 annot-version=v4.1 MSPLLFFFLVLPLLLESKAKAIEAGDNCSLITHQITGKIGGVINYSSRLGKEQKVAMEMAVEDYFRSSCSKQLTLQLEDSGGDSSRVASATTELISSKRV QSIIGAMTAQETGLFSEVDMNMKNIPIISLTSPAITPPSMPHQLPYFLQMSNHITLHMQCIVDIVGHFKWRKVTALYEHKNGFSAYSGIITLLSDKLKVV NSEISYHSDLSSLSSISNPEITIEQELIKLRSKSNRVFIVLVSSLELAILLFEKANQMRMMEKDYVWIVTDEIASLLDSVDSSVVNNMQGVIGFKTNFAR TRDTFKRFKSRFRKKYGSKYPEEEEYSNPSIFALRAYDATWAIARAMEKSQGKITSKELSGNILSSNFEGLSGTVRFENNVLWQSPSFQIINVVGNSYRV MAVWSPKFGFSQSEEKYNGATANGSLKNLGPVYWPGGMPSTNPRGWAISDADIPLKIGVPAMGAFKQFVRVTFDQTQNATCVTGFTINVFEAVVKRLPYN LPYVLVPFYGTYDEMVEQVYRNGLDAAVGDTEIMADRFQYVEFSQPYVDSGLVMVVTQKAETSHATWMLKTFTKKLWLLMIAMHVFIGLLVWLIERGNNT EFDGIGTMLWFSVTIIFYAHRQPLTSNLSRLVLTPWLFVILIVVASFTASLSSAMTVSRLEPSVLDIETLQRTNAPVGCNGNSFIVRYLINVLLFKPENI KKINSIHDYPEAFETGYVKAAFFVEPHARVFLGKYCKGYTKAGPTLKLGGFGFVFPKGSPLAFDISEATLKVIESGELRQLEELLSSSNCTSRTTAIDTS SLGLEPFAGLFILSGTIAAFGSLVAIFRLGRNLHILSYIQTELTRRRIWRWASLQLSRKSSTKEISSTQAC

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G29120		ATGLR2.7	GLUTAMATE RECEPTOR 2.7, gluta...		Potri.014G028500 [exp]	0	1
AT4G14746			unknown protein		Potri.005G051900 [exp]	1.41	0.9838
AT1G05577			Domain of unknown function (DU...		Potri.009G024900 [exp]	1.73	0.9773
AT4G15800		RALFL33	ralf-like 33 (.1)		Potri.014G131800 [exp]	2.00	0.9780
AT3G52970		CYP76G1	"cytochrome P450, family 76, s...		Potri.005G029800 [exp]	6.00	0.9683
AT4G17800	AT-hook		Predicted AT-hook DNA-binding ...		Potri.003G091300 [exp]	6.32	0.9686
AT5G10190			Major facilitator superfamily ...		Potri.007G091700 [exp]	6.78	0.9563
AT2G01170		BAT1	bidirectional amino acid trans...		Potri.007G100700 [exp]	7.93	0.9668
AT3G52970		CYP76G1	"cytochrome P450, family 76, s...		Potri.005G029700 [exp]	8.00	0.9669
AT1G68940			Armadillo/beta-catenin-like re...		Potri.010G136500 [exp]	8.48	0.9721
AT2G37050			Leucine-rich repeat protein ki...		Potri.007G004700 [exp]	8.77	0.9670

Compare expression of checked genes

Potri.014G028500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.