Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G11210 360 / 4e-112 ATGLR2.5 ARABIDOPSIS THALIANA GLU, glutamate receptor 2.5 (.1) AT2G29120 358 / 3e-110 ATGLR2.7 GLUTAMATE RECEPTOR 2.7, glutamate receptor 2.7 (.1) AT2G29100 344 / 5e-105 ATGLR2.9 GLUTAMATE RECEPTOR 2.9, glutamate receptor 2.9 (.1) AT5G27100 339 / 1e-103 ATGLR2.1 ARABIDOPSIS THALIANA GLUTAMATE RECEPTOR 2.1, glutamate receptor 2.1 (.1) AT2G29110 334 / 2e-101 ATGLR2.8 glutamate receptor 2.8 (.1) AT2G24720 327 / 4e-99 ATGLR2.2 glutamate receptor 2.2 (.1) AT4G35290 325 / 3e-98 ATGLUR2, ATGLR3.2, GLUR2 GLUTAMATE RECEPTOR 3.2, glutamate receptor 2 (.1.2) AT2G17260 322 / 8e-97 ATGLR3.1, ATGLR2, GLR2 glutamate receptor 2 (.1) AT2G24710 315 / 1e-94 ATGLR2.3 glutamate receptor 2.3 (.1) AT3G51480 310 / 9e-93 ATGLR3.6 glutamate receptor 3.6 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G028500 [exp] 1082 / 0 AT2G29120 360 / 5e-110 GLUTAMATE RECEPTOR 2.7, glutamate receptor 2.7 (.1) Potri.001G374600 [exp] 486 / 8e-160 AT2G29120 452 / 9e-145 GLUTAMATE RECEPTOR 2.7, glutamate receptor 2.7 (.1) Potri.004G052500 [exp] 484 / 2e-158 AT2G29100 445 / 3e-141 GLUTAMATE RECEPTOR 2.9, glutamate receptor 2.9 (.1) Potri.004G052400 [exp] 481 / 3e-157 AT2G29100 429 / 3e-135 GLUTAMATE RECEPTOR 2.9, glutamate receptor 2.9 (.1) Potri.001G374700 [exp] 466 / 3e-152 AT2G29120 446 / 1e-142 GLUTAMATE RECEPTOR 2.7, glutamate receptor 2.7 (.1) Potri.001G374300 [exp] 462 / 6e-151 AT2G29120 422 / 1e-133 GLUTAMATE RECEPTOR 2.7, glutamate receptor 2.7 (.1) Potri.001G375000 [exp] 456 / 1e-148 AT2G29120 415 / 1e-130 GLUTAMATE RECEPTOR 2.7, glutamate receptor 2.7 (.1) Potri.001G375100 [exp] 456 / 3e-148 AT2G29120 419 / 3e-132 GLUTAMATE RECEPTOR 2.7, glutamate receptor 2.7 (.1) Potri.001G374800 [exp] 448 / 2e-145 AT2G29120 426 / 6e-135 GLUTAMATE RECEPTOR 2.7, glutamate receptor 2.7 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10013976 [exp] 407 / 7e-130 AT2G29110 372 / 1e-114 glutamate receptor 2.8 (.1) Lus10013952 [exp] 403 / 5e-128 AT2G29120 377 / 1e-116 GLUTAMATE RECEPTOR 2.7, glutamate receptor 2.7 (.1) Lus10038670 [exp] 395 / 1e-121 AT3G10490 441 / 5e-143 Arabidopsis NAC domain containing protein 51, NAC domain containing protein 52 (.1.2) Lus10026235 [exp] 382 / 8e-119 AT2G29120 912 / 0.0 GLUTAMATE RECEPTOR 2.7, glutamate receptor 2.7 (.1) Lus10003436 [exp] 372 / 3e-115 AT2G29120 867 / 0.0 GLUTAMATE RECEPTOR 2.7, glutamate receptor 2.7 (.1) Lus10026913 [exp] 361 / 3e-112 AT2G29120 790 / 0.0 GLUTAMATE RECEPTOR 2.7, glutamate receptor 2.7 (.1) Lus10020109 [exp] 337 / 1e-102 AT2G29120 822 / 0.0 GLUTAMATE RECEPTOR 2.7, glutamate receptor 2.7 (.1) Lus10039671 [exp] 320 / 6e-96 AT1G05200 1239 / 0.0 glutamate receptor 3.4 (.1.2) Lus10027171 [exp] 314 / 6e-94 AT1G05200 1243 / 0.0 glutamate receptor 3.4 (.1.2) Lus10026553 [exp] 306 / 4e-91 AT4G35290 1035 / 0.0 GLUTAMATE RECEPTOR 3.2, glutamate receptor 2 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0030 [poplar] [flax] Ion_channel PF00060 [poplar] [flax] Lig_chan Ligand-gated ion channel CL0177 [poplar] [flax] PBP PF00497 [poplar] [flax] SBP_bac_3 Bacterial extracellular solute-binding proteins, family 3 CL0144 [poplar] [flax] Periplas_BP PF01094 [poplar] [flax] ANF_receptor Receptor family ligand binding region
Representative CDS sequence Show only first row Show all	>Potri.014G028800.1 pacid=42764749 polypeptide=Potri.014G028800.1.p locus=Potri.014G028800 ID=Potri.014G028800.1.v4.1 annot-version=v4.1 ATGTCAGCTCAGGAAACAGGACCTCTCTCCAAGGTTGACAAAAACATCAAGTATCTTCCTATAATATCCTTAACATCACCGGCAATAACCCCGCCATCGA TAGCACACCAATTACCACACTTCTTTCAATTTAGTGACCATATCACCTTCCACATACGATGCATAGCTGCTATTGTAGGCCAGTTCAAGTGGAGGAAAGT TACAGTGATATATGAATCAAAAAATGGTTTCTCTGCTTATTCTGGGATTTTAACTCTCCTATCTGACACTCTCAAGGCTGTCAACACAGACATTGAACAC CACTCAACTTTCCCTTCCTTGCCTTCTCTATCAAACGCAGAAGCCTTCATTGAACAAGAGCTTGTCAATATGAGGAGCAGGAGCAACAGGGTTTTCGTAG TTGTGATATCTTCTTTAGAAATGGCAGTCCTGCTATTTGAGAAAGCAAAGCAGTTGGGGATGATGGAGAAAGGTTATGTGTGGATTGTCACAGATGAGAT TGCAAGCTTTCTTGACTCTTTCGATTCTTCAGTTGTCAACAACATGCAAGGTGTGATTGGTTTTAGAACCGGATTTGTACGCAGTAGCAAGCCTTTTAAA CGGTTTAGATCTAGATTTCGCAGCAAGTATCGTTCAGAGTATCCAGAAGAAGAAGAATATTGCAATCCAAGTATCTTTGCTCTCCGTGCTTATGATGCAA CTTGGGCTATTGCTCAAGCTATGAAAAACTCACCAGGAAAAATAAGCTCAAAAGACTTATCTAGAGCCATTTCATCCAGCAGATTTAGAGGTGTAAGTGG AGTAATAAGGTTTAAAAATAATGTGTTGCGGCAAATGCCTTCATTTCAAATCATTAATGTTGTAGGTAACAGCTACAGAGAGATTGCAGTTTGGTCACCA GACTTCGGCTTTTTAAAGAGCCTCGAGAAACATAATGGTGTGAATTCCAGTGGTTCTTTTGAAGAATGGGGGCCGGTTTATTGGCCTGGTGGAGAGGGCG GTGTTCCTCGCGGATGGGTGATTTCTGAGACGGATAAACCTTTGAAGATAGGAGTTCCGGCCATGGGCGCTTTTCATGAATTTGTGAAGGTGAGTTTAGA CGAGGCCAGTAACAAAACTTGTGTCACAGGGTTCTCAATTAATGTATTTGAAGCAACTTTAAAGCGTCTCCCATATTACTTGCCGTATGTGTTCGTTCCA TTCAATGGGTCATACGACAAGATGGTGGAGCAAGTTCATGACAAGGGCCTGGATGCTGCTGTTGGTGATTTTTCAATAGAGCCTGGAAGGTTTCAGTACG CAGAATTTTCGCAACCATATATTGATTCCAGACTCGTCATGACAGTACCAGCGAAATCAGCCAAGTCCAATATAACATGGATGCTGAAAACCTTCACCAA AAAGTTATGGTTACTAATGGTAGCAATGCATATGTTCATAGGATGCCTAGTATGGATACTTGAACGTGGGGGCAACACAGAATTTGAAGGAATCGGGGGT ATGTTATGGTTTTCCGTCACAGTAATATTCTACGCACATGGGCAACCGCTTAGAAACAATTTATCTCGAGTAATGGTGGCACCATGGTTATTTGTGATTC TCATCGTCACGGCAAGCTTCATGGCTGATCTTTCCTCAAGGATGACAGTCTCACGGCTAGAACCATCAGTTTTGGATATTGATACACTACTGAAAACCAA CGCACCTGTTGGTTGCAATGGGAACTCCTTTGTTGTGCGATATTTGACTAACGTTTTGCATTTCAAACCAGAAAATATAAGGAAGTTTTATTCAGGAAAC GATTACCTAGAAGCCTTTGAAACTGGACATATCAAAGCAGCATTCTTTGTTGAGCCACATGCAAAAGTCTTCCTGGGAAAATACTGCAAGCGCTTCACAC AAGCAAAATCCACCTTTCAATTAGGCGGTTTCGGCTATGTTTTTCCAAAGGGTTCTCCTCTGGTTTTTGACATGTCAGAGGCAATCCTGAAAGTTATAGA GAGTGGAGAAATGAGGCAAATGGAAGAGATTCTCTCCTTTCCCAATTGCTCCTCTGATGCGTTAAGGGACAACTCGAGTTTAGATCTGGAGCCTTTCGCT GGGCTATTCATATTATCCGGTAGCGTCTCAGCCTTCGGTTTCCTAGTTGCTATTCTGCGTATGGGAAGGAATCTGCAGATCCTGAGCTACATTCAAGAAG CACTGACAAAAAGGAGAATTTGGAGATGGGCAAGTATTCATTTGTCCAGAGAAAATTCCAGAGAAAATTCCACCATCCCAAAGACTAAAGACCAAGTTCA AACTTCTACAAGTGTAGAGCTCGCAAATTTTGCCCACTAG
AA sequence Show only first row Show all	>Potri.014G028800.1 pacid=42764749 polypeptide=Potri.014G028800.1.p locus=Potri.014G028800 ID=Potri.014G028800.1.v4.1 annot-version=v4.1 MSAQETGPLSKVDKNIKYLPIISLTSPAITPPSIAHQLPHFFQFSDHITFHIRCIAAIVGQFKWRKVTVIYESKNGFSAYSGILTLLSDTLKAVNTDIEH HSTFPSLPSLSNAEAFIEQELVNMRSRSNRVFVVVISSLEMAVLLFEKAKQLGMMEKGYVWIVTDEIASFLDSFDSSVVNNMQGVIGFRTGFVRSSKPFK RFRSRFRSKYRSEYPEEEEYCNPSIFALRAYDATWAIAQAMKNSPGKISSKDLSRAISSSRFRGVSGVIRFKNNVLRQMPSFQIINVVGNSYREIAVWSP DFGFLKSLEKHNGVNSSGSFEEWGPVYWPGGEGGVPRGWVISETDKPLKIGVPAMGAFHEFVKVSLDEASNKTCVTGFSINVFEATLKRLPYYLPYVFVP FNGSYDKMVEQVHDKGLDAAVGDFSIEPGRFQYAEFSQPYIDSRLVMTVPAKSAKSNITWMLKTFTKKLWLLMVAMHMFIGCLVWILERGGNTEFEGIGG MLWFSVTVIFYAHGQPLRNNLSRVMVAPWLFVILIVTASFMADLSSRMTVSRLEPSVLDIDTLLKTNAPVGCNGNSFVVRYLTNVLHFKPENIRKFYSGN DYLEAFETGHIKAAFFVEPHAKVFLGKYCKRFTQAKSTFQLGGFGYVFPKGSPLVFDMSEAILKVIESGEMRQMEEILSFPNCSSDALRDNSSLDLEPFA GLFILSGSVSAFGFLVAILRMGRNLQILSYIQEALTKRRIWRWASIHLSRENSRENSTIPKTKDQVQTSTSVELANFAH

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G11210		ATGLR2.5	ARABIDOPSIS THALIANA GLU, glut...		Potri.014G028800 [exp]	0	1
AT5G35110			unknown protein		Potri.006G189700 [exp]	4.69	0.7616
AT5G35405			Protein of unknown function (D...		Potri.002G229600 [exp]	8.12	0.8242
AT5G35405			Protein of unknown function (D...		Potri.002G229650 [exp]	11.48	0.8242
AT3G11930			Adenine nucleotide alpha hydro...		Potri.006G198200 [exp]	25.69	0.8242
AT4G23180		RLK4, CRK10	cysteine-rich RLK (RECEPTOR-li...		Potri.011G027900 [exp]	28.33	0.8179
					Potri.009G102850 [exp]	30.16	0.8047
AT5G43360		PHT1;3, ATPT4, ...	PHOSPHATE TRANSPORTER 3, phosp...		Potri.015G022800 [exp]	32.00	0.7974	10
					Potri.014G065200 [exp]	33.04	0.8119
AT4G23280		CRK20	cysteine-rich RLK (RECEPTOR-li...		Potri.011G027600 [exp]	35.69	0.8037
					Potri.001G259204 [exp]	41.02	0.7964

Compare expression of checked genes

Potri.014G028800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.