Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G19270 665 / 0 CYP707A4 "cytochrome P450, family 707, subfamily A, polypeptide 4", cytochrome P450, family 707, subfamily A, polypeptide 4 (.1) AT5G45340 578 / 0 CYP707A3 "cytochrome P450, family 707, subfamily A, polypeptide 3", cytochrome P450, family 707, subfamily A, polypeptide 3 (.1.2) AT4G19230 576 / 0 CYP707A1 "cytochrome P450, family 707, subfamily A, polypeptide 1", cytochrome P450, family 707, subfamily A, polypeptide 1 (.1.2) AT2G29090 525 / 0 CYP707A2 "cytochrome P450, family 707, subfamily A, polypeptide 2", cytochrome P450, family 707, subfamily A, polypeptide 2 (.1.2) AT5G05690 268 / 2e-84 CBB3, DWF3, CYP90A1, CYP90A, CPD DWARF 3, CYTOCHROME P450 90A1, CONSTITUTIVE PHOTOMORPHOGENIC DWARF, CABBAGE 3, Cytochrome P450 superfamily protein (.1.2.3) AT1G05160 265 / 2e-83 ATKAO1, CYP88A3 ENT-KAURENOIC ACID OXYDASE 1, "cytochrome P450, family 88, subfamily A, polypeptide 3", cytochrome P450, family 88, subfamily A, polypeptide 3 (.1) AT2G32440 249 / 2e-77 ATKAO2, CYP88A4, KAO2 ARABIDOPSIS ENT-KAURENOIC ACID HYDROXYLASE 2, ent-kaurenoic acid hydroxylase 2 (.1.2) AT5G38970 248 / 6e-77 ATBR6OX, CYP85A1, BR6OX1 brassinosteroid-6-oxidase 1 (.1.2.3) AT3G13730 241 / 6e-74 CYP90D1 "cytochrome P450, family 90, subfamily D, polypeptide 1", cytochrome P450, family 90, subfamily D, polypeptide 1 (.1) AT4G36380 239 / 4e-73 ROT3 ROTUNDIFOLIA 3, Cytochrome P450 superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G126100 [exp] 852 / 0 AT3G19270 666 / 0.0 "cytochrome P450, family 707, subfamily A, polypeptide 4", cytochrome P450, family 707, subfamily A, polypeptide 4 (.1) Potri.004G140900 [exp] 702 / 0 AT3G19270 731 / 0.0 "cytochrome P450, family 707, subfamily A, polypeptide 4", cytochrome P450, family 707, subfamily A, polypeptide 4 (.1) Potri.009G101700 [exp] 677 / 0 AT3G19270 711 / 0.0 "cytochrome P450, family 707, subfamily A, polypeptide 4", cytochrome P450, family 707, subfamily A, polypeptide 4 (.1) Potri.004G235400 [exp] 570 / 0 AT4G19230 778 / 0.0 "cytochrome P450, family 707, subfamily A, polypeptide 1", cytochrome P450, family 707, subfamily A, polypeptide 1 (.1.2) Potri.009G033900 [exp] 538 / 0 AT2G29090 677 / 0.0 "cytochrome P450, family 707, subfamily A, polypeptide 2", cytochrome P450, family 707, subfamily A, polypeptide 2 (.1.2) Potri.001G242600 [exp] 537 / 0 AT2G29090 652 / 0.0 "cytochrome P450, family 707, subfamily A, polypeptide 2", cytochrome P450, family 707, subfamily A, polypeptide 2 (.1.2) Potri.002G069600 [exp] 273 / 2e-86 AT5G45340 296 / 1e-95 "cytochrome P450, family 707, subfamily A, polypeptide 3", cytochrome P450, family 707, subfamily A, polypeptide 3 (.1.2) Potri.008G067500 [exp] 273 / 2e-86 AT5G05690 710 / 0.0 DWARF 3, CYTOCHROME P450 90A1, CONSTITUTIVE PHOTOMORPHOGENIC DWARF, CABBAGE 3, Cytochrome P450 superfamily protein (.1.2.3) Potri.010G189800 [exp] 266 / 1e-83 AT5G05690 717 / 0.0 DWARF 3, CYTOCHROME P450 90A1, CONSTITUTIVE PHOTOMORPHOGENIC DWARF, CABBAGE 3, Cytochrome P450 superfamily protein (.1.2.3)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10021725 [exp] 695 / 0 AT3G19270 633 / 0.0 "cytochrome P450, family 707, subfamily A, polypeptide 4", cytochrome P450, family 707, subfamily A, polypeptide 4 (.1) Lus10042652 [exp] 691 / 0 AT3G19270 647 / 0.0 "cytochrome P450, family 707, subfamily A, polypeptide 4", cytochrome P450, family 707, subfamily A, polypeptide 4 (.1) Lus10019858 [exp] 603 / 0 AT3G19270 643 / 0.0 "cytochrome P450, family 707, subfamily A, polypeptide 4", cytochrome P450, family 707, subfamily A, polypeptide 4 (.1) Lus10012675 [exp] 570 / 0 AT3G19270 586 / 0.0 "cytochrome P450, family 707, subfamily A, polypeptide 4", cytochrome P450, family 707, subfamily A, polypeptide 4 (.1) Lus10035685 [exp] 544 / 0 AT4G19230 714 / 0.0 "cytochrome P450, family 707, subfamily A, polypeptide 1", cytochrome P450, family 707, subfamily A, polypeptide 1 (.1.2) Lus10033308 [exp] 541 / 0 AT5G45340 732 / 0.0 "cytochrome P450, family 707, subfamily A, polypeptide 3", cytochrome P450, family 707, subfamily A, polypeptide 3 (.1.2) Lus10034768 [exp] 537 / 0 AT5G45340 731 / 0.0 "cytochrome P450, family 707, subfamily A, polypeptide 3", cytochrome P450, family 707, subfamily A, polypeptide 3 (.1.2) Lus10016515 [exp] 466 / 6e-162 AT2G29090 554 / 0.0 "cytochrome P450, family 707, subfamily A, polypeptide 2", cytochrome P450, family 707, subfamily A, polypeptide 2 (.1.2) Lus10040785 [exp] 374 / 3e-118 AT1G07510 1078 / 0.0 FTSH protease 10 (.1) Lus10037273 [exp] 340 / 4e-114 AT4G19230 461 / 2e-161 "cytochrome P450, family 707, subfamily A, polypeptide 1", cytochrome P450, family 707, subfamily A, polypeptide 1 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00067 [poplar] [flax] p450 Cytochrome P450
Representative CDS sequence Show only first row Show all	>Potri.014G029100.1 pacid=42764223 polypeptide=Potri.014G029100.1.p locus=Potri.014G029100 ID=Potri.014G029100.1.v4.1 annot-version=v4.1 ATGGGAGGGATTCTTGCTTACGTTCTCATCTTTCTTGTAAGTGTAGTGGCTTATATCATTAAGAAAAGAAACAACAAAGAACCCTACACAGGAATTAAGC TCCCACCAGGTTCGTTGGGATGGCCTTACATAGGAGAGACTCTTCAACTCTACTCTCAAGACCCAAATGTGTTCTTTGCTTCCAAACAAAAAAGGTATGG AGAAATATTCAAGACCCATATTCTTGGTTGCCCTAGTGTTATGCTGGCTAGCCCTGAGGCAGCTCGGTTTGTGCTTGTGACTCAAGCTCATTTGTTCAAG CCAACATATCCCAAAAGCAAGGAACATTTGATCGGTCCATCAGCTCTTTTTTTTCATCAAGGAGATTACCATGTCCGTCTAAGGAAGTTGGTTCAGGGAT CCTTGTCTCTGGATGCAATTCGAAATTTGGTTGCTGATATTTCAGCTACAGCAGCCTCTACCTTAGACTCATGGGATGGTGGACATGTCCTTAACACCTT CCAAGAAATGAAAAAGTTTTCTTTTGAGGTAGGAATACTAGCAATTTTTGGCAATTTGGAAGCCCATTATAGAGAAGAATTGAAAAGGAACTACAGAATT GTGGATAAAGGCTATAATTCCTTTCCAACAAGCCTCCCGGGAACTCCTTTCAAGAAGGCAGTGCTGGCAAGAAAGAGGTTAAGCAAGATTCTTGGTGATA TTATTTGTGAAAGAAAAGAGAAGAGGTTGCTTGAAAAGGATCTCTTGGGTTGTCTATTGAACTCAAAAGATGAGAAAGGAGAAGTCTTAACCGATGATCA AATCGCGGATAACATTATCGGAGTGCTCTTTGCTGCTCAAGACACCACAGCTACTGCCATGACATGGATTGTCAAGTATCTCCATGACAACCAGAAAATT CTAGAGGCTGTAAAGGCCGAACAGAATGCAATCCGCAAACTGAACGATGAGGAAAATCAACCATTGAGTTGGAGTCAAACTAGGAGCATGCCATTAACCC ACAAGGTTGTGCTGGAGAGCTTGAGAATGGCAAGCATTATATCTTTTACATTTAGGGAAGCAGTGGCTGATGTCGAATACAAGGGGTACTTGATTCCGAA AGGTTGGAAGGTGATGCCTTTGTTCAGGAACATTCATCACAATCCAGAATATTTCAGTGATCCTCAGAAATTTGATCCTACAAGATTTGAGGTTGCACCA AAACCCAATACATATATGCCATTTGGTAGTGGACAACATGCCTGTCCAGGCAATGAACTTGCCAAGTTGGAGATTCTTGTTATGATCCACCATTTGCTCA CCAAGTTCAGATGGAAAGTGGTGGGATCTCAAAGTGGGATTCAGTATGGCCCATTCCCTGTGCCATTGCATGGACTTCCAGCCAGATTTTGGAAAGAATC TACCAGCTAG
AA sequence Show only first row Show all	>Potri.014G029100.1 pacid=42764223 polypeptide=Potri.014G029100.1.p locus=Potri.014G029100 ID=Potri.014G029100.1.v4.1 annot-version=v4.1 MGGILAYVLIFLVSVVAYIIKKRNNKEPYTGIKLPPGSLGWPYIGETLQLYSQDPNVFFASKQKRYGEIFKTHILGCPSVMLASPEAARFVLVTQAHLFK PTYPKSKEHLIGPSALFFHQGDYHVRLRKLVQGSLSLDAIRNLVADISATAASTLDSWDGGHVLNTFQEMKKFSFEVGILAIFGNLEAHYREELKRNYRI VDKGYNSFPTSLPGTPFKKAVLARKRLSKILGDIICERKEKRLLEKDLLGCLLNSKDEKGEVLTDDQIADNIIGVLFAAQDTTATAMTWIVKYLHDNQKI LEAVKAEQNAIRKLNDEENQPLSWSQTRSMPLTHKVVLESLRMASIISFTFREAVADVEYKGYLIPKGWKVMPLFRNIHHNPEYFSDPQKFDPTRFEVAP KPNTYMPFGSGQHACPGNELAKLEILVMIHHLLTKFRWKVVGSQSGIQYGPFPVPLHGLPARFWKESTS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G19270		CYP707A4	"cytochrome P450, family 707, ...		Potri.014G029100 [exp]	0	1
AT5G26742		EMB1138	embryo defective 1138, DEAD bo...		Potri.005G000166 [exp]	5.47	0.6545
AT1G55790			Domain of unknown function (DU...		Potri.011G141700 [exp]	9.00	0.7233
					Potri.011G125251 [exp]	19.94	0.6631
AT5G40100			Disease resistance protein (TI...		Potri.006G283100 [exp]	24.65	0.6500
AT1G74520		ATHVA22A	HVA22 homologue A (.1)		Potri.017G139000 [exp]	31.62	0.6419
AT1G55790			Domain of unknown function (DU...		Potri.001G438100 [exp]	40.03	0.6502
AT1G69940		ATPPME1	Pectin lyase-like superfamily ...		Potri.006G137100 [exp]	40.69	0.6230
AT1G53240		mMDH1	mitochondrial malate dehydroge...		Potri.017G152000 [exp]	40.81	0.6056
AT1G75750		GASA1	GAST1 protein homolog 1 (.1.2)		Potri.005G239100 [exp]	42.08	0.6395	Pt-GASA1.2
AT1G67265		DVL3, RTFL21	DEVIL 3, ROTUNDIFOLIA like 21 ...		Potri.004G102950 [exp]	55.20	0.6377

Compare expression of checked genes

Potri.014G029100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.