Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	AMYVM1.2
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G25000 580 / 0 AMY1, AMY3, ATAMY1 alpha-amylase-like (.1) AT1G69830 389 / 2e-127 ATAMY3, AMY3 alpha-amylase-like 3 (.1) AT1G76130 365 / 6e-124 ATAMY2, AMY2 ARABIDOPSIS THALIANA ALPHA-AMYLASE-LIKE 2, alpha-amylase-like 2 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G126300 [exp] 760 / 0 AT4G25000 591 / 0.0 alpha-amylase-like (.1) Potri.017G093200 [exp] 405 / 6e-133 AT1G69830 514 / 6e-168 alpha-amylase-like 3 (.1) Potri.010G092900 [exp] 384 / 4e-125 AT1G69830 1236 / 0.0 alpha-amylase-like 3 (.1) Potri.002G014300 [exp] 368 / 1e-124 AT1G76130 709 / 0.0 ARABIDOPSIS THALIANA ALPHA-AMYLASE-LIKE 2, alpha-amylase-like 2 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10042655 [exp] 644 / 0 AT4G25000 567 / 0.0 alpha-amylase-like (.1) Lus10021728 [exp] 635 / 0 AT4G25000 563 / 0.0 alpha-amylase-like (.1) Lus10036717 [exp] 398 / 1e-130 AT1G69830 1175 / 0.0 alpha-amylase-like 3 (.1) Lus10013270 [exp] 395 / 2e-129 AT1G69830 1180 / 0.0 alpha-amylase-like 3 (.1) Lus10037211 [exp] 392 / 2e-128 AT1G69830 1156 / 0.0 alpha-amylase-like 3 (.1) Lus10030793 [exp] 390 / 3e-125 AT1G69830 1173 / 0.0 alpha-amylase-like 3 (.1) Lus10021836 [exp] 359 / 2e-121 AT1G76130 700 / 0.0 ARABIDOPSIS THALIANA ALPHA-AMYLASE-LIKE 2, alpha-amylase-like 2 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0058 [poplar] [flax] Glyco_hydro_tim PF00128 [poplar] [flax] Alpha-amylase Alpha amylase, catalytic domain CL0369 [poplar] [flax] GHD PF07821 [poplar] [flax] Alpha-amyl_C2 Alpha-amylase C-terminal beta-sheet domain
Representative CDS sequence Show only first row Show all	>Potri.014G029400.1 pacid=42764400 polypeptide=Potri.014G029400.1.p locus=Potri.014G029400 ID=Potri.014G029400.1.v4.1 annot-version=v4.1 ATGAGCTTTCTCACTTTCTGCTTCTTCTCTCTCTTTCTCTCAGTTTTCCCTCTGCTCACTTCTTCTTATTTACTATTTCAGGGGTTCAATTGGGAGTCAT GTAACAAGGCAGGAGGATGGTACAACTCGCTAAAAAACTCAGTTCCTGATTTGGCTAATGCCGGAATTACTCATGTCTGGCTTCCTCCATCCTCTCAGTC CGTTGCACCACAAGGATATATGCCAGGCAGGCTTTATGATCTGAGCGCATCAAGATATGGATCACAGGATGAATTGAAATCACTAATTGGGGATTTCAAC CAGAAGGGAATTAAATGCCTAGCTGACATTGTCATAAACCATAGAACTGCTGAGAAGCAAGATGAGAGAGGAATATGGTCTGTTTTTGAAGGTGGAACTT CTGATGGTCGCCTTGACTGGGGGCCATCCTTCATTTGTGGCGATGACACTGCCTATTCTGATGGCAAAGGAAATCCTGATTCAGGAGATGACTTTGAGCC TGCCCCTGATATTGACCACCTCAATCCAAGAGTTCAGAGAGAATTATCAGATTGGATGAATTGGTTAAAGTCTGAAATAGGATTTGATGGATGGCGATTC GACTTTGTTAAGGGTTATGCTCCTAGTGTTACCAAAATTTACATGGAAAATACTTCACCAGATTTTGCAGTTGGTGAAAAATGGGACTCTCTTGCTTATG GTCAGGATGGAAAGCTTGATTATAACCAGGATGCGCACCGCGGCAGTATAAAAGATTGGATTCAAGCAGCTGGTGGTGCTGTCACAGCATTTGATTTCAC ATCTAAAGGGATACTTCAAGCTGCTGTGCAAGGAGAGTTATGGAGGTTGAAGGACTCAAATGGAAAGCCACCAGGATTGATAGGCCTGTTGCCACAAAAT GCTGTGACTTTCATTGACAATCATGACACCGGGTCTACTCAGCAGATTTGGCCATTTCCATCAGATAAAGTCATGCAGGGATATGCCTACATTCTTACCC ATCCAGGGACCCCGTCCATCTTTTATGATCACTTCTTTGACTGGGGCCTCAAGGAAGAAATTGGGAAATTGGCAACAATTAGGAAAAAATACGGGATTGG CTCTGCCAGCACTGTGAATATTTTAGCCTCTGATGCTGATCTTTATGTGGCAGCAATTAATGATAACATAATCATGAAGATTGGACCCAAAACCGATCTC GGAAACCTTATCCCCTCAAACTTCCAGGTTGCTACATCTGGAACAGATTACTGTGTGTGGGTAAAATAG
AA sequence Show only first row Show all	>Potri.014G029400.1 pacid=42764400 polypeptide=Potri.014G029400.1.p locus=Potri.014G029400 ID=Potri.014G029400.1.v4.1 annot-version=v4.1 MSFLTFCFFSLFLSVFPLLTSSYLLFQGFNWESCNKAGGWYNSLKNSVPDLANAGITHVWLPPSSQSVAPQGYMPGRLYDLSASRYGSQDELKSLIGDFN QKGIKCLADIVINHRTAEKQDERGIWSVFEGGTSDGRLDWGPSFICGDDTAYSDGKGNPDSGDDFEPAPDIDHLNPRVQRELSDWMNWLKSEIGFDGWRF DFVKGYAPSVTKIYMENTSPDFAVGEKWDSLAYGQDGKLDYNQDAHRGSIKDWIQAAGGAVTAFDFTSKGILQAAVQGELWRLKDSNGKPPGLIGLLPQN AVTFIDNHDTGSTQQIWPFPSDKVMQGYAYILTHPGTPSIFYDHFFDWGLKEEIGKLATIRKKYGIGSASTVNILASDADLYVAAINDNIIMKIGPKTDL GNLIPSNFQVATSGTDYCVWVK

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G25000		AMY1, AMY3, ATA...	alpha-amylase-like (.1)		Potri.014G029400 [exp]	0	1	AMYVM1.2
AT5G64810	WRKY	ATWRKY51, WRKY5...	ARABIDOPSIS THALIANA WRKY DNA-...		Potri.005G085200 [exp]	2.44	0.8749	WRKY51.1
AT5G13790	MADS	AGL15	AGAMOUS-like 15 (.1)		Potri.009G055700 [exp]	2.44	0.8900
AT2G17040	NAC	ANAC036	NAC domain containing protein ...		Potri.005G103200 [exp]	7.34	0.8596
AT5G20710		BGAL7	beta-galactosidase 7 (.1)		Potri.001G025701 [exp]	10.09	0.8002
AT3G46400			Leucine-rich repeat protein ki...		Potri.012G002900 [exp]	16.85	0.8531
AT1G74190		AtRLP15	receptor like protein 15 (.1)		Potri.005G013400 [exp]	18.76	0.8336
AT3G50930		BCS1	cytochrome BC1 synthesis (.1)		Potri.009G119132 [exp]	21.63	0.8238
AT3G48090		ATEDS1, EDS1	enhanced disease susceptibilit...		Potri.015G069600 [exp]	24.69	0.8526	EDS1.2
AT1G71400		AtRLP12	receptor like protein 12 (.1)		Potri.012G027600 [exp]	26.45	0.8002
AT1G47890		AtRLP7	receptor like protein 7 (.1)		Potri.012G028600 [exp]	27.56	0.8227

Compare expression of checked genes

Potri.014G029400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.