Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G04860 778 / 0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G18485 398 / 5e-126 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT4G30700 376 / 2e-119 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G11290 365 / 3e-115 CRR22 CHLORORESPIRATORY REDUCTION22, Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G15510 362 / 4e-113 VAC1, ATECB2 VANILLA CREAM 1, ARABIDOPSIS EARLY CHLOROPLAST BIOGENESIS2, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G74600 353 / 8e-110 OTP87 organelle transcript processing 87, pentatricopeptide (PPR) repeat-containing protein (.1) AT2G27610 352 / 1e-109 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT4G21300 351 / 2e-109 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT4G39530 348 / 2e-108 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT3G53360 341 / 2e-106 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G047600 [exp] 385 / 6e-121 AT1G18485 1077 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.009G067000 [exp] 379 / 3e-120 AT1G18485 500 / 8e-164 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.013G044700 [exp] 378 / 4e-120 AT3G22690 582 / 0.0 unknown protein Potri.008G052200 [exp] 380 / 5e-120 AT2G39620 816 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.002G155100 [exp] 371 / 2e-117 AT3G61170 933 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.005G215500 [exp] 369 / 5e-115 AT3G63370 922 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 86, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.011G156800 [exp] 365 / 1e-114 AT4G21300 842 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.003G058700 [exp] 365 / 3e-114 AT1G15510 1113 / 0.0 VANILLA CREAM 1, ARABIDOPSIS EARLY CHLOROPLAST BIOGENESIS2, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.006G181800 [exp] 361 / 1e-113 AT4G30700 1025 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10032904 [exp] 900 / 0 AT2G04860 736 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10036071 [exp] 360 / 6e-113 AT1G18485 464 / 5e-151 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10008967 [exp] 360 / 1e-112 AT4G21300 876 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10028855 [exp] 368 / 5e-112 AT4G21300 873 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10004081 [exp] 357 / 2e-110 AT3G63370 893 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 86, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10014707 [exp] 357 / 2e-110 AT3G63370 893 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 86, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10001220 [exp] 353 / 9e-110 AT3G57430 1110 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 84, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10035815 [exp] 349 / 4e-109 AT4G30700 1026 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10018978 [exp] 355 / 6e-109 AT4G13650 1258 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10013991 [exp] 352 / 9e-109 AT3G57430 632 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 84, Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [poplar] [flax] TPR PF01535 [poplar] [flax] PPR PPR repeat CL0020 [poplar] [flax] TPR PF13041 [poplar] [flax] PPR_2 PPR repeat family CL0020 [poplar] [flax] TPR PF13812 [poplar] [flax] PPR_3 Pentatricopeptide repeat domain
Representative CDS sequence Show only first row Show all	>Potri.014G029500.2 pacid=42764118 polypeptide=Potri.014G029500.2.p locus=Potri.014G029500 ID=Potri.014G029500.2.v4.1 annot-version=v4.1 ATGAACTTGGCCCCTCATACATGGCTATCCTCTCCAAAGCCCAATCTCTCTTTCTTTCACTCTTTACTCAAATCTCACAATGAAACACACAGCCCAAAAT CAGCATTACTTCTGTTTCGTCACTTGTTACAATCCAATCTGAAACCAAATGATCTTACGTTTTCATTACTTCTTAAATCCTTCACTTCAATTCCACTAAA TGAAAAACTAGAAGCCAATCAGATTCATACCCACTTGCTAAAATCTGGGTTTGACCAGTTTGTCTATATAAGCACTGCTCTTCTTGATTTTTACATGAAA TTGGGATGTGTACATTCTGCACGCAACCTGTTTGATCATATGCTTGACAGAGATATTGTTTCTTGGAATGCGTTGATTTGTGGGTGCTCGCGAAATGGGT ACGATGTTGATGCTTTGGAGATTTTTGTTCAATTGCTTCGAGAGGGTTTTTCTCCTCTTCAAACTACTTTGGTTGGTTTGGTTCCGTCTTGTGGACGACG TGAGTTTGTGTTTCAAGGGAGGTCTATTCATGGGTTTGGTATCAAGACTGGTATTGATCTGGATTCTCAAGTGAAAAACGCACTTACGTATATGTATGCT AAATCCGGGGACTTGGAAGCGGCTGAGCTTTTGTTTGAAGAATTAGAGGACAAAAGTGTTGTTTCTTGGAATACCATGATTGGTGCTTATGCCGGAAATG GTTTCTTTAATGAGTCAATGCTTGTGTTTAAACGAATGGTAGAGCAAAAAGTGGAGGTCAACCCAGTTACTATTATGAGCCTTTTACCAGCAAATATTAG TCCTGAACTGATCCATTGTTATGCCATCAAAACTGGACTTATCAATAATGGCTCAGTAGTTACTTCACTAGTTTGTTTATACGCAAAGTGTGGGAGTACT GAATTAGCAGAACTGCTTTACTGGTCTTTTCCACAGAAAAACTTGGTTTCATTAACTGCAATTATTTCGAGCTATGCTGAAAAAGGAAACATGGATTTGG TGGTGGAGTGTTTTTCTAGAATGCAGCAGTTGGACATGAAACTGGATTCAGTTGCTATGGTTAGCATCCTTCATGGAATCACAGACCCTTCTCATATGAG TATCGGAATTGCTCTCCATGGCTATGCATTAAAGAATGGTTTGGATACCCATAATTTGGTTTCTAACGGGCTAATAAGTATGTACTTCAAGTTCAATGAC ATAGAAGCTGCCATCTCTTTGTTTTATGAAATGCCTGAAAAACCATTAATCAGTTGGAATTCGGTTATATCTGGCTGTGTGCAGGCTGGAAGGGCGAGTG ATGCCATGAAGTTTTTCTGTCAAATGAAGATGTTTGGACTTAGTCCTGATACTATTACTGTTGCTAGTTTACTGACTGGTTGTTCCCAACTCGGATACTT ACGGTTAGGGGAGAGACTTCACAACTACATTCTTAGAAACAACCTAGAAGTGGAAGACTTTGTTGGGACGTCTCTTATAGACATGTATACCAAGTGTGGA AGCATTCTGCTCGCAGAAAGGGTATTCAAAAGCATCAGAGAACCGTGTGTAGCTACTTGGAACACTATGATTTCAGGCTATAGTTGGTATGGCTTGGAAC ATAATGCTCTAAATTGTTACTCTAAAATGCGAGAACAAGGGCTAGAGCCTGATAGAATAACTTTCTTGGGAGTTTTAGCTGCTTGTATCCACGGTGGTCT TCTTCATGAAGGGAAAAAGCACTTCCAGATCATGACAGAAGAATTTGGTATGGTACCAAATTTGCAACACTGTGCTTGCATGGTTGGTCTCCTAGGCCGT GCAGGTTTATTTGAGGAAGCATTATTATTCATCAAGAACATGGAATCCGAGCCTGATTCTGCAGTGTGGGGTGCTTTGCTTAATGCTTGTTGCATCCATC AAGAGATCAAACTTGGAGAATGTTTGGCCAAGAAGTTATATTTATTGGATTACAAAAATTGTGGGCTCTATGTATTGATGTCAAATCTTTATGCAGCCAC AAATAGGTGGAATGATGCTGCAAAGATGAGGGAAATAATGAAAGATATTGGTGGGGATGGCACTTCAGGAGTCAGTCAAATTGAAGTAATAACTTCATCA CGAGAAATGGATCCAGACTTGTACCAAGAATTCCTTCAATTCTAA
AA sequence Show only first row Show all	>Potri.014G029500.2 pacid=42764118 polypeptide=Potri.014G029500.2.p locus=Potri.014G029500 ID=Potri.014G029500.2.v4.1 annot-version=v4.1 MNLAPHTWLSSPKPNLSFFHSLLKSHNETHSPKSALLLFRHLLQSNLKPNDLTFSLLLKSFTSIPLNEKLEANQIHTHLLKSGFDQFVYISTALLDFYMK LGCVHSARNLFDHMLDRDIVSWNALICGCSRNGYDVDALEIFVQLLREGFSPLQTTLVGLVPSCGRREFVFQGRSIHGFGIKTGIDLDSQVKNALTYMYA KSGDLEAAELLFEELEDKSVVSWNTMIGAYAGNGFFNESMLVFKRMVEQKVEVNPVTIMSLLPANISPELIHCYAIKTGLINNGSVVTSLVCLYAKCGST ELAELLYWSFPQKNLVSLTAIISSYAEKGNMDLVVECFSRMQQLDMKLDSVAMVSILHGITDPSHMSIGIALHGYALKNGLDTHNLVSNGLISMYFKFND IEAAISLFYEMPEKPLISWNSVISGCVQAGRASDAMKFFCQMKMFGLSPDTITVASLLTGCSQLGYLRLGERLHNYILRNNLEVEDFVGTSLIDMYTKCG SILLAERVFKSIREPCVATWNTMISGYSWYGLEHNALNCYSKMREQGLEPDRITFLGVLAACIHGGLLHEGKKHFQIMTEEFGMVPNLQHCACMVGLLGR AGLFEEALLFIKNMESEPDSAVWGALLNACCIHQEIKLGECLAKKLYLLDYKNCGLYVLMSNLYAATNRWNDAAKMREIMKDIGGDGTSGVSQIEVITSS REMDPDLYQEFLQF

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G04860			Tetratricopeptide repeat (TPR)...		Potri.014G029500 [exp]	0	1
AT1G77170			Tetratricopeptide repeat (TPR)...		Potri.006G164100 [exp]	2.23	0.9070
AT4G14300			RNA-binding (RRM/RBD/RNP motif...		Potri.010G067500 [exp]	3.87	0.8674
AT4G01570			Tetratricopeptide repeat (TPR)...		Potri.002G183100 [exp]	6.00	0.8754
AT3G12770		MEF22	mitochondrial editing factor ...		Potri.013G152000 [exp]	6.63	0.8746
AT2G27110	FAR1_related	FRS3	FAR1-related sequence 3 (.1.2....		Potri.004G196300 [exp]	11.48	0.8654
AT4G13650			Pentatricopeptide repeat (PPR)...		Potri.009G035100 [exp]	19.59	0.8476
AT5G18440		AtNUFIP	nuclear FMRP-interacting prote...		Potri.008G012250 [exp]	27.98	0.8443
AT1G26500			Pentatricopeptide repeat (PPR)...		Potri.016G086100 [exp]	30.85	0.8199
AT4G19890			Pentatricopeptide repeat (PPR-...		Potri.015G121700 [exp]	31.84	0.8335
AT3G11540		SPY	SPINDLY, Tetratricopeptide rep...		Potri.006G208900 [exp]	33.16	0.8420	Pt-SPY.2

Compare expression of checked genes

Potri.014G029500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.