Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	2,Pt-LHCA5.2
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G45474 306 / 3e-105 LHCA5 photosystem I light harvesting complex gene 5 (.1.2) AT3G47470 155 / 2e-46 CAB4, LHCA4 light-harvesting chlorophyll-protein complex I subunit A4 (.1) AT3G61470 145 / 3e-42 LHCA2 photosystem I light harvesting complex gene 2 (.1) AT1G19150 141 / 1e-40 LHCA2*1, LHCA2*1, LHCA2*1, LHCA2*1, LHCA2*1, LHCA2*1, LHCA2*1, LHCA6, LHCA2*1, LHCA2*1, LHCA2*1, LH photosystem I light harvesting complex gene 6 (.1) AT1G61520 129 / 9e-36 LHCA3*1, LHCA3*1, LHCA3*1 photosystem I light harvesting complex gene 3 (.1.2.3) AT3G54890 102 / 4e-26 LHCA1 photosystem I light harvesting complex gene 1 (.1.2.3.4) AT4G10340 101 / 2e-25 LHCB5 light harvesting complex of photosystem II 5 (.1) AT1G15820 98 / 3e-24 CP24, LHCB6 light harvesting complex photosystem II subunit 6 (.1) AT2G05100 96 / 3e-23 LHCB2.3, LHCB2.1 LIGHT-HARVESTING CHLOROPHYLL B-BINDING 2, photosystem II light harvesting complex gene 2.1 (.1) AT2G05070 96 / 3e-23 LHCB2.2 LIGHT-HARVESTING CHLOROPHYLL B-BINDING 2, photosystem II light harvesting complex gene 2.2 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G062200 [exp] 152 / 4e-45 AT3G47470 442 / 2e-159 light-harvesting chlorophyll-protein complex I subunit A4 (.1) Potri.003G171500 [exp] 151 / 2e-44 AT3G61470 409 / 5e-146 photosystem I light harvesting complex gene 2 (.1) Potri.001G056700 [exp] 150 / 4e-44 AT3G61470 410 / 3e-146 photosystem I light harvesting complex gene 2 (.1) Potri.006G139600 [exp] 140 / 2e-40 AT1G19150 393 / 1e-139 photosystem I light harvesting complex gene 6 (.1) Potri.014G172400 [exp] 119 / 3e-32 AT1G61520 362 / 3e-127 photosystem I light harvesting complex gene 3 (.1.2.3) Potri.019G063101 [exp] 104 / 2e-26 AT4G10340 409 / 2e-145 light harvesting complex of photosystem II 5 (.1) Potri.008G041000 [exp] 102 / 5e-26 AT3G54890 395 / 4e-141 photosystem I light harvesting complex gene 1 (.1.2.3.4) Potri.010G221100 [exp] 102 / 7e-26 AT3G54890 392 / 4e-140 photosystem I light harvesting complex gene 1 (.1.2.3.4) Potri.005G258600 [exp] 100 / 1e-24 AT1G76570 491 / 6e-176 Chlorophyll A-B binding family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10042657 [exp] 311 / 4e-107 AT1G45474 371 / 3e-131 photosystem I light harvesting complex gene 5 (.1.2) Lus10021730 [exp] 303 / 6e-104 AT1G45474 369 / 2e-130 photosystem I light harvesting complex gene 5 (.1.2) Lus10021663 [exp] 153 / 2e-45 AT3G47470 434 / 2e-156 light-harvesting chlorophyll-protein complex I subunit A4 (.1) Lus10001644 [exp] 153 / 3e-45 AT3G47470 437 / 3e-157 light-harvesting chlorophyll-protein complex I subunit A4 (.1) Lus10011361 [exp] 147 / 5e-43 AT3G61470 414 / 6e-148 photosystem I light harvesting complex gene 2 (.1) Lus10006416 [exp] 147 / 1e-42 AT3G61470 404 / 6e-144 photosystem I light harvesting complex gene 2 (.1) Lus10039912 [exp] 138 / 2e-39 AT1G19150 362 / 2e-127 photosystem I light harvesting complex gene 6 (.1) Lus10012297 [exp] 125 / 2e-34 AT1G61520 474 / 2e-171 photosystem I light harvesting complex gene 3 (.1.2.3) Lus10016074 [exp] 125 / 2e-34 AT1G61520 474 / 2e-171 photosystem I light harvesting complex gene 3 (.1.2.3) Lus10027649 [exp] 103 / 1e-26 AT1G19150 219 / 4e-72 photosystem I light harvesting complex gene 6 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00504 [poplar] [flax] Chloroa_b-bind Chlorophyll A-B binding protein
Representative CDS sequence Show only first row Show all	>Potri.014G029700.9 pacid=42764559 polypeptide=Potri.014G029700.9.p locus=Potri.014G029700 ID=Potri.014G029700.9.v4.1 annot-version=v4.1 ATGGCAGTTGCAATGGGTAGACCTTTCGTTATTCAGCCATGTTTGTCTTCCTCCTTGTGCTCCTTGTCTAAGAACATAAATAAGTCATCATTCGGCGCAG CAGAAACCTTTTTGCCTGCCAAACCAAGCAGCACTCGTTGCACACCAGTTGTGGTTCATGCCCAACAGCGACCAACATGGCTTCCTGGGCTTGACCCTCC ACCTTATCTTGATGGAACTTTGGCTGGAGATTTTGGGTTCGACCCTCTTGGCCTCGGAGAGGACCCACAGAGCCTGAAGTGGTATGTGCAGGCAGAGTTG GTCCATGCTCGCTTTGCCATGGCTGGAGTTGCTGGAATTCTTTTCACAGATCTACTACGAGTGACAGGGATCAGAAAATTGCCAGTTTGGTATGAAGCAG GTGCTGTGAAATTCGAATTTGCAAGCACAAGGACGTTGATTGTGGTCCAGCTGCTCCTGATGGGATTTGCTGAGACAAAAAGGTACATGGATTTCGTTAG TCCTGGATCTCAAGCTAAGGAAGGATCTTTCTTTGGACTGGAATCTGCACTAGAAGGCTTGGAACCTGGCTATCCTGGAGGTCCTCTGTTAAACCCTCTA GGTCTGGCTAGAGATATCGAAAACGCCCATGTCTGGAAGCTTAAAGAGATTAAAAATGGACGGCTTGCGATGGTAGCCATGGTGGGCATTTTTGTGCAAG CTGCAGTGACTCATGCAGGTCCAATAGATAACCTTATAGAGCACCTCTCTAACCCATGGCACAGAACCATCATTCAAACCCTTGCTAACTCTGGTTCCTA G
AA sequence Show only first row Show all	>Potri.014G029700.9 pacid=42764559 polypeptide=Potri.014G029700.9.p locus=Potri.014G029700 ID=Potri.014G029700.9.v4.1 annot-version=v4.1 MAVAMGRPFVIQPCLSSSLCSLSKNINKSSFGAAETFLPAKPSSTRCTPVVVHAQQRPTWLPGLDPPPYLDGTLAGDFGFDPLGLGEDPQSLKWYVQAEL VHARFAMAGVAGILFTDLLRVTGIRKLPVWYEAGAVKFEFASTRTLIVVQLLLMGFAETKRYMDFVSPGSQAKEGSFFGLESALEGLEPGYPGGPLLNPL GLARDIENAHVWKLKEIKNGRLAMVAMVGIFVQAAVTHAGPIDNLIEHLSNPWHRTIIQTLANSGS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G45474		LHCA5	photosystem I light harvesting...		Potri.014G029700 [exp]	0	1	2,Pt-LHCA5.2
AT2G21280		GC1, ATSULA	GIANT CHLOROPLAST 1, NAD(P)-bi...		Potri.009G124800 [exp]	3.00	0.9761	GC1.1
					Potri.004G156500 [exp]	3.16	0.9736
AT2G17080			Arabidopsis protein of unknown...		Potri.002G012466 [exp]	4.00	0.9587
AT5G51810		AT2353, GA20OX2...	gibberellin 20 oxidase 2 (.1)		Potri.005G065400 [exp]	4.47	0.9562	GA20ox2-2
AT1G24470		ATKCR2, KCR2	beta-ketoacyl reductase 2 (.1)		Potri.008G181600 [exp]	4.89	0.9737
AT2G26580	YABBY	YAB5	YABBY5, plant-specific transcr...		Potri.006G067800 [exp]	5.65	0.9681
					Potri.001G001000 [exp]	5.91	0.9694
AT4G37740	GRF	ATGRF2	growth-regulating factor 2 (.1...		Potri.003G118100 [exp]	6.92	0.9511
AT3G16520		UGT88A1	UDP-glucosyl transferase 88A1 ...		Potri.012G036000 [exp]	6.92	0.9643
AT3G03620			MATE efflux family protein (.1...		Potri.013G069250 [exp]	7.74	0.9675

Compare expression of checked genes

Potri.014G029700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.