Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G26570 669 / 0 WEB1 WEAK CHLOROPLAST MOVEMENT UNDER BLUE LIGHT 1, Plant protein of unknown function (DUF827) (.1) AT4G33390 542 / 0 Plant protein of unknown function (DUF827) (.1) AT5G42880 431 / 2e-138 Plant protein of unknown function (DUF827) (.1) AT1G45545 386 / 1e-121 Plant protein of unknown function (DUF827) (.1) AT2G38370 52 / 2e-06 Plant protein of unknown function (DUF827) (.1) AT3G51720 52 / 2e-06 Plant protein of unknown function (DUF827) (.1) AT1G12150 49 / 2e-05 Plant protein of unknown function (DUF827) (.1) AT5G55860 47 / 5e-05 Plant protein of unknown function (DUF827) (.1) AT2G40480 47 / 6e-05 Plant protein of unknown function (DUF827) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G126700 [exp] 1082 / 0 AT2G26570 694 / 0.0 WEAK CHLOROPLAST MOVEMENT UNDER BLUE LIGHT 1, Plant protein of unknown function (DUF827) (.1) Potri.016G133300 [exp] 73 / 5e-13 AT2G38370 258 / 2e-78 Plant protein of unknown function (DUF827) (.1) Potri.019G049201 [exp] 61 / 3e-09 AT2G40480 358 / 3e-117 Plant protein of unknown function (DUF827) (.1) Potri.001G369200 [exp] 55 / 2e-07 AT5G55860 516 / 4e-176 Plant protein of unknown function (DUF827) (.1) Potri.016G005200 [exp] 46 / 9e-05 AT5G55860 208 / 2e-59 Plant protein of unknown function (DUF827) (.1) Potri.006G004100 [exp] 43 / 0.0008 AT1G12150 293 / 2e-92 Plant protein of unknown function (DUF827) (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10035778 [exp] 790 / 0 AT2G26570 843 / 0.0 WEAK CHLOROPLAST MOVEMENT UNDER BLUE LIGHT 1, Plant protein of unknown function (DUF827) (.1) Lus10037354 [exp] 767 / 0 AT2G26570 840 / 0.0 WEAK CHLOROPLAST MOVEMENT UNDER BLUE LIGHT 1, Plant protein of unknown function (DUF827) (.1) Lus10009099 [exp] 72 / 2e-12 AT2G38370 340 / 1e-107 Plant protein of unknown function (DUF827) (.1) Lus10025249 [exp] 67 / 3e-11 AT2G38370 327 / 5e-105 Plant protein of unknown function (DUF827) (.1) Lus10034211 [exp] 52 / 2e-06 AT2G40480 385 / 1e-128 Plant protein of unknown function (DUF827) (.1) Lus10016626 [exp] 52 / 2e-06 AT5G55860 577 / 0.0 Plant protein of unknown function (DUF827) (.1) Lus10022531 [exp] 52 / 2e-06 AT5G55860 573 / 0.0 Plant protein of unknown function (DUF827) (.1) Lus10038751 [exp] 44 / 0.0007 AT1G12150 354 / 5e-116 Plant protein of unknown function (DUF827) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF05701 [poplar] [flax] WEMBL Weak chloroplast movement under blue light
Representative CDS sequence Show only first row Show all	>Potri.014G029800.5 pacid=42763837 polypeptide=Potri.014G029800.5.p locus=Potri.014G029800 ID=Potri.014G029800.5.v4.1 annot-version=v4.1 ATGGAGGATGTGAAAATTGCTGCAGTTACATCTCCTCCACAGTCATCCCAGGATAATGGCACTTCTCCTGGTGAAGCTTCATTAAGCCCTGCTAGAAATG GAGATGGAGAAATTGATCAAGTTCGTGCATCAGAGGATTCAGTTTCAACTTCATCGGTTGATAAAATAGAGGCAAACGATCAAGGTTCGTTGAAGGATGG TTCCAAATCTGAAGCAACACAAAATGTTTTGAATGAACATGAGGAATCTCTAGAGAAAACAACAGGCATTGAAGTTCCTGCATCGGAGGATTCAGTTTCA ACCTCATCGGTTGATAAAATAGAGGCGAACGATCAAGGTGCGTTGAAGGATGGTTCCAAATCTGAAGCAACACAAAATGTTTTGAATGAACATGAGGAAT CTCTAGAGAAAACAACAGGCATTGAAGTTTCCTCGAATGGTCTGCAACGTCAAGAGAAAACCGAAGCCATGCAGGATTCCTCTGATGGACAGAAATCTCA AGGAAAATCTGAACCCGTACCTAATTCCTCTGATGTAGAGCAACCTCAGGATCCTATTGAAAGAGCACAACCTGATGAACCTGCTTTGCCCCATGTAAAG GTTAGAGTGCAGCAGGATAAGTCTGCTTCGCCTCGTGCGAAGGTTGCCAGTCCTGCTTTCAGGACACCAAAATCTAGTGATTCTCCTCGACTTTCCCCTC AACTTGTTAAACAGGCTGATATAAACAGAGGTCTAATTGATACGGCAGCTCCTTTTGAATCTGTTAAAGAAGCTGTTTCTAAGTTTGGAGGAATTGTTGA TTGGAAAGCCCATAGAATCCAGACTGTAGAGAGACGCAAGCTCGTAGACCAAGAATTAGAGACAGTACAGGTGGAGATGCCTGAGTACAAGAAACGGTCA GAGGCTGCTGAAGAGGAAAAAACACAAGTTCTTAAGGAGTTGGACAACACTAAGAGACTAATTGAAGAGCTAAAGCTCAATCTGGAGAGGGCACAGACAG AAGAGCATCAGGCAAAACAAGATTCTGAGCTTGTCAAGCTCAGGGTGGAAGAAATGGAACAGGGGATTGCTGATGAAGCTAGTGTTGCAGCCAAGGCACA ACTTGAGGTTGCTAAAGCCAGGCATTCAGCTGCCGTATCGGAACTAAAGGCTGTTAATGATGAGTTGGAAGCACTGCACAAGGAATATACTTCTTTGGTT AGTGAGAAAGATGAAGCTGTGAAAAAAGCTGAAGTGGCTGTTTCTGCATCCAAGGAAGTTGAGAAGACTGTAGAGGAACTCACTATTGAGCTGATTTCTA CAAAGGAATCCTTAGAGTCTGCTCATGCTGCTCATCTGGAGGCAGAGGAGCAAAGAATAGGAGCAATCATGGCCAAGGAGCAAGATTCTCTTCACTGGGA GAAGGAATTAAAGCAAGCAGAAGAGGAGCTCCAGAGACTTAACCAACAAATTCTTTCAGCAAAAGATCTCAAATCAAAACTAGACACTGCTTCAGCTTTG TTAGTTGATTTGAAAACTGAGTTAGCAGCGTATATGGAATCTAAAATAAAGGATGAAACTGAAGGAGAACCAAGAGCTGAGCAAGAGGAACCTGAGAAAA AAACTCACACCAACATACAAGCAACAGTTGCTTCAGCAAAGAAGGAACTGGAAGAAGTAAAACTCAACATTGAGAAAGCAACTGCTGAAGTAAATTGCTT GAAGGTGGCTGCCTTATCGTTACAAACAGAGCTTGAAAAAGAAAAACTGGCTCTTTCCACCATTAAGCAGAGAGAAGGAATGGCCTCAGTAACAGTTGCT TCTCTTCAGGCTGAGCTGGACAAAACTAGGTCAGAAACGGCCCGGGTTCAGATGAAAGAGAAAGAAGCCAGGGAAAAAATGATCGAGATTCCCAAGAAAC TGCAGCAGGCAGCGGAAGCAGCTGATGAGGCCAAGTCACTTGCTCAAATGGCTCGTGAAGAGCTGCGCAAGGCGAAGGAAGAAGCAGAACAAGCAAAGGC TGGCGCAAGTACGATGGAGAGTAGATTACTTGCAGCTCAAAAGGAGATAGAAGCTTCCAGGGCCTCTGAAAAATTGGCATTAGCAGCCATTAAAGCTTTG CAAGAGAGTGAATCTGCTCACAGCACCAGTGATGTGGATACACCTACCAGTGTAACACTTTCTTTAGAAGAGTACTATGAGCTCAGCAAGCTTGCCCATG AAGCAGAGGAGCAGGCCAACCTGAGGGTAGCAGCTGCTATTTCACAAATTGAGGTAGCCAAGGAATCCGAGTCAAGAACTGCAGAGAAGTTGGAACAAGT GAATCAAGAGATGAGTGCAAGAAAGGAAGCTCTGAAAATTGCAATGGATAAGGCTGAGCAGGCCAAGGAAGGGAAGTTGGGTGTAGAACAGGAGTTGAGA AAGTGGAGAGCTGAACATGAGCAACAGCGAAGGGCTAGTGAATCTGGTCAGGGAGCCGCAAACCCCATTAAAACCCCAGGGGCAAGCTTTGAGGACAGGA AAGAATCAAAGAACTTCGACCGTGCACCAGATGCTGCTGTGGGTTATGCTTCAAGTCCAAAATCGCATGTACCTGGAAGTAACACCGAAACCGATTCCTC TCCAGAAGTAAAGGTTCCAAGGAAGAAGAAGAAATCATTGTTCCCACGATTGTTACTGTTTTTAGCAAGGAAGAAGTCGCATGCATCGAAGACAGGGTAA
AA sequence Show only first row Show all	>Potri.014G029800.5 pacid=42763837 polypeptide=Potri.014G029800.5.p locus=Potri.014G029800 ID=Potri.014G029800.5.v4.1 annot-version=v4.1 MEDVKIAAVTSPPQSSQDNGTSPGEASLSPARNGDGEIDQVRASEDSVSTSSVDKIEANDQGSLKDGSKSEATQNVLNEHEESLEKTTGIEVPASEDSVS TSSVDKIEANDQGALKDGSKSEATQNVLNEHEESLEKTTGIEVSSNGLQRQEKTEAMQDSSDGQKSQGKSEPVPNSSDVEQPQDPIERAQPDEPALPHVK VRVQQDKSASPRAKVASPAFRTPKSSDSPRLSPQLVKQADINRGLIDTAAPFESVKEAVSKFGGIVDWKAHRIQTVERRKLVDQELETVQVEMPEYKKRS EAAEEEKTQVLKELDNTKRLIEELKLNLERAQTEEHQAKQDSELVKLRVEEMEQGIADEASVAAKAQLEVAKARHSAAVSELKAVNDELEALHKEYTSLV SEKDEAVKKAEVAVSASKEVEKTVEELTIELISTKESLESAHAAHLEAEEQRIGAIMAKEQDSLHWEKELKQAEEELQRLNQQILSAKDLKSKLDTASAL LVDLKTELAAYMESKIKDETEGEPRAEQEEPEKKTHTNIQATVASAKKELEEVKLNIEKATAEVNCLKVAALSLQTELEKEKLALSTIKQREGMASVTVA SLQAELDKTRSETARVQMKEKEAREKMIEIPKKLQQAAEAADEAKSLAQMAREELRKAKEEAEQAKAGASTMESRLLAAQKEIEASRASEKLALAAIKAL QESESAHSTSDVDTPTSVTLSLEEYYELSKLAHEAEEQANLRVAAAISQIEVAKESESRTAEKLEQVNQEMSARKEALKIAMDKAEQAKEGKLGVEQELR KWRAEHEQQRRASESGQGAANPIKTPGASFEDRKESKNFDRAPDAAVGYASSPKSHVPGSNTETDSSPEVKVPRKKKKSLFPRLLLFLARKKSHASKTG

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G26570		WEB1	WEAK CHLOROPLAST MOVEMENT UNDE...		Potri.014G029800 [exp]	0	1
AT4G40070			RING/U-box superfamily protein...		Potri.008G025300 [exp]	43.08	0.6314
AT5G48160		OBE2	OBERON2, Protein of unknown fu...		Potri.014G164800 [exp]	45.34	0.5922

Compare expression of checked genes

Potri.014G029800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.