Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G33330 791 / 0 PGSIP3, GUX2 glucuronic acid substitution of xylan 2, plant glycogenin-like starch initiation protein 3 (.1.2) AT3G18660 503 / 4e-172 PGSIP1, GUX1 glucuronic acid substitution of xylan 1, plant glycogenin-like starch initiation protein 1 (.1.2.3) AT1G77130 491 / 5e-168 PGSIP2, GUX3 glucuronic acid substitution of xylan 3, plant glycogenin-like starch initiation protein 2 (.1) AT1G54940 473 / 2e-161 PGSIP4 plant glycogenin-like starch initiation protein 4 (.1) AT1G08990 465 / 2e-158 PGSIP5 plant glycogenin-like starch initiation protein 5 (.1) AT5G18480 119 / 3e-28 PGSIP6 plant glycogenin-like starch initiation protein 6 (.1) AT1G60470 82 / 8e-17 ATGOLS4 galactinol synthase 4 (.1) AT1G60450 79 / 7e-16 ATGOLS7 galactinol synthase 7 (.1) AT1G09350 79 / 9e-16 ATGOLS3 galactinol synthase 3 (.1) AT1G56600 78 / 1e-15 ATGOLS2 galactinol synthase 2 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G107200 [exp] 493 / 2e-168 AT3G18660 884 / 0.0 glucuronic acid substitution of xylan 1, plant glycogenin-like starch initiation protein 1 (.1.2.3) Potri.013G022900 [exp] 486 / 1e-166 AT1G08990 561 / 0.0 plant glycogenin-like starch initiation protein 5 (.1) Potri.005G187900 [exp] 483 / 2e-164 AT1G77130 803 / 0.0 glucuronic acid substitution of xylan 3, plant glycogenin-like starch initiation protein 2 (.1) Potri.005G061600 [exp] 483 / 2e-164 AT3G18660 863 / 0.0 glucuronic acid substitution of xylan 1, plant glycogenin-like starch initiation protein 1 (.1.2.3) Potri.005G033500 [exp] 471 / 1e-160 AT1G08990 555 / 0.0 plant glycogenin-like starch initiation protein 5 (.1) Potri.013G049100 [exp] 118 / 4e-28 AT5G18480 661 / 0.0 plant glycogenin-like starch initiation protein 6 (.1) Potri.008G189400 [exp] 83 / 3e-17 AT1G60470 545 / 0.0 galactinol synthase 4 (.1) Potri.008G101000 [exp] 83 / 5e-17 AT2G47180 507 / 0.0 galactinol synthase 1 (.1) Potri.010G150400 [exp] 82 / 8e-17 AT2G47180 519 / 0.0 galactinol synthase 1 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10021731 [exp] 931 / 0 AT4G33330 803 / 0.0 glucuronic acid substitution of xylan 2, plant glycogenin-like starch initiation protein 3 (.1.2) Lus10042658 [exp] 926 / 0 AT4G33330 801 / 0.0 glucuronic acid substitution of xylan 2, plant glycogenin-like starch initiation protein 3 (.1.2) Lus10020890 [exp] 521 / 3e-179 AT3G18660 828 / 0.0 glucuronic acid substitution of xylan 1, plant glycogenin-like starch initiation protein 1 (.1.2.3) Lus10018922 [exp] 503 / 9e-172 AT1G77130 847 / 0.0 glucuronic acid substitution of xylan 3, plant glycogenin-like starch initiation protein 2 (.1) Lus10028623 [exp] 501 / 2e-170 AT1G77130 830 / 0.0 glucuronic acid substitution of xylan 3, plant glycogenin-like starch initiation protein 2 (.1) Lus10031507 [exp] 458 / 1e-155 AT1G54940 542 / 0.0 plant glycogenin-like starch initiation protein 4 (.1) Lus10029932 [exp] 450 / 3e-152 AT1G54940 527 / 0.0 plant glycogenin-like starch initiation protein 4 (.1) Lus10033485 [exp] 391 / 3e-129 AT3G18660 677 / 0.0 glucuronic acid substitution of xylan 1, plant glycogenin-like starch initiation protein 1 (.1.2.3) Lus10027949 [exp] 113 / 2e-26 AT5G18480 635 / 0.0 plant glycogenin-like starch initiation protein 6 (.1) Lus10000817 [exp] 103 / 5e-25 AT5G18480 329 / 2e-111 plant glycogenin-like starch initiation protein 6 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0110 [poplar] [flax] GT-A PF01501 [poplar] [flax] Glyco_transf_8 Glycosyl transferase family 8
Representative CDS sequence Show only first row Show all	>Potri.014G029900.1 pacid=42762670 polypeptide=Potri.014G029900.1.p locus=Potri.014G029900 ID=Potri.014G029900.1.v4.1 annot-version=v4.1 ATGGCTGAGGGACTTAACCTTCAAAAGCTAATGAAGACTACACCTTCAAAAGCTTTGGTTATCAGAATCAATTTGGTTTTCCTTGCTTTCTTTCTTGTTT TCTATGCATCCCTTCTTCTCTCGCCATCTTCTTCAGTCTATTTTGAGAATGCAGCATCTCTCGTTAAGTGCTCATTGAGAGAGTGCCATCACAAGGCAGA AAATGGGAGTGGGGTGAAGGCAATCGTGGAAGAGACGAAAGCCAATGCTCGAAGAAATATGACCAAGGTTGAGGTACCGAGCTTCATGAATGGGATGGGA AAGGGAAAGAAGATCGGCATGGTAAATATGGATGAAGATGATGTTACCGGCTGGAAAGCTCATGGAGAGACTATACCTATCGGTTTTGAAAGGGTGTCTG AGTTTTTCAAGTGGCCGGACTTGTTTCCTGAATGGATTGACGAGGAGGAAGAAACAGATGTTCCATCCTGTCCAGAAATACCAATGCCAGATTTCGAAGT CTATGACAGCCTGGACATGATAGTGGCAAAACTACCATGCAAGTATCCTGAAGAAGGATGGAATAGAGAGGTGTTTAGGCTCCAAGTTCACCTCTTAGCA GCGAATTTGGCTGTGAAAAAGGGTAGGAGGGATTGGAATTGGAGGACCAAGGTGGTGTTTTGGAGCAAATGCAGACCAATGTTGGAGTTGTTTAGGTGCG ATGATTTGGTAAAACAGGAAGGTGATTGGTGGTTCTATGAGCCGGAGATGACAAAGTTGGAACAGAAGGTCTCGTTGCCTATTGGGTCTTGCAAACTGGC TTTGCCTCTGTGGACACAAGGTATTAACGAAGTCTACGATCTCTCCAAGATTCAAAGGACAACAAGAACTACCAAACGAGAGGCCTATGCCACGGTACTC CATTCCTCAGAAGCCTACGTCTGTGGTGTCATAGCCCTTGCCCAAAGCCTTCTCCAAACGGGGACCAAGCGTGACCTTGTTCTTCTCCTAGATAATTCCA TCTCTGAACCCAAACGTCATGCTCTTGCAGCAGCCGGGTGGAAGATCCGACTCATCAAAAGAATCCGAAACCCTAGAGCTGAAAAATACTCGTACAATGA GTACAACTATAGCAAGTTTAGGCTGTGGCAGCTCACTGATTATGACAAGATCGTCTTCATAGATGCGGACATCATAGTTTTGCGTAACCTTGATATCCTT TTTCACTTCCCTCAAATGTCAGCTACGGGGAACGATGTATGGATTTTTAATTCTGGTATCATGGTCATTGAGCCATCAAATTGCACATTCAAAATATTAA TGGACCGACGCAAGGAGATTATTTCCTACAATGGAGGTGATCAAGGGTTCCTTAATGAAGTTTTTGTGTGGTGGCATAGATTACCAAGAAGAGTGAACTT CTTGAAAAACTTCTGGGCTAACACTACCAATGAGGCTAGTGTCAAGAACGAGCTCTTTGGGGCAGACCCACCAAAAGTTTATTCCATACATTATCTGGGG TTAAAGCCTTGGCTTTGTTACAGAGACTATGATTGTAACTGGAATATAGGAGATCAACGTGTTTATGCAAGTGATGTAGCACATCAGAGGTGGTGGAAAT TTCACGATGCCATGGATGAGAAGTTGCAAAAGTTTTGTGGGTTAACAAAGAAGAGAAAAATTGAGTTGGACTGGGATAGAAAAATGGCTAGAAAGAGTCA GTTCAGTGATGAGCATTGGAAAATAAATGTTACTGATCCTAGAAGGGTTCATTTGATATAA
AA sequence Show only first row Show all	>Potri.014G029900.1 pacid=42762670 polypeptide=Potri.014G029900.1.p locus=Potri.014G029900 ID=Potri.014G029900.1.v4.1 annot-version=v4.1 MAEGLNLQKLMKTTPSKALVIRINLVFLAFFLVFYASLLLSPSSSVYFENAASLVKCSLRECHHKAENGSGVKAIVEETKANARRNMTKVEVPSFMNGMG KGKKIGMVNMDEDDVTGWKAHGETIPIGFERVSEFFKWPDLFPEWIDEEEETDVPSCPEIPMPDFEVYDSLDMIVAKLPCKYPEEGWNREVFRLQVHLLA ANLAVKKGRRDWNWRTKVVFWSKCRPMLELFRCDDLVKQEGDWWFYEPEMTKLEQKVSLPIGSCKLALPLWTQGINEVYDLSKIQRTTRTTKREAYATVL HSSEAYVCGVIALAQSLLQTGTKRDLVLLLDNSISEPKRHALAAAGWKIRLIKRIRNPRAEKYSYNEYNYSKFRLWQLTDYDKIVFIDADIIVLRNLDIL FHFPQMSATGNDVWIFNSGIMVIEPSNCTFKILMDRRKEIISYNGGDQGFLNEVFVWWHRLPRRVNFLKNFWANTTNEASVKNELFGADPPKVYSIHYLG LKPWLCYRDYDCNWNIGDQRVYASDVAHQRWWKFHDAMDEKLQKFCGLTKKRKIELDWDRKMARKSQFSDEHWKINVTDPRRVHLI

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G33330		PGSIP3, GUX2	glucuronic acid substitution o...		Potri.014G029900 [exp]	0	1
AT1G07120			unknown protein		Potri.009G073600 [exp]	3.46	0.9300
AT1G67510			Leucine-rich repeat protein ki...		Potri.008G176900 [exp]	3.60	0.9094
AT5G17420		ATCESA7, MUR10,...	MURUS 10, IRREGULAR XYLEM 3, C...		Potri.018G103900 [exp]	3.87	0.9372
AT5G06390		FLA17	FASCICLIN-like arabinogalactan...		Potri.008G012400 [exp]	5.65	0.9348
AT4G28500	NAC	ANAC073, SND2, ...	SECONDARY WALL-ASSOCIATED NAC ...		Potri.017G016700 [exp]	6.00	0.9331
AT2G37090		IRX9	IRREGULAR XYLEM 9, Nucleotide-...		Potri.016G086400 [exp]	8.66	0.9287
AT5G61340			unknown protein		Potri.015G060900 [exp]	8.94	0.9136
AT2G32810		BGAL9	beta-galactosidase 9, beta gal...		Potri.017G057900 [exp]	9.16	0.9103	BGAL9.1
AT5G17420		ATCESA7, MUR10,...	MURUS 10, IRREGULAR XYLEM 3, C...		Potri.006G181900 [exp]	9.89	0.9187	Pt-CESA2.1
AT3G19150		ACK1, ICK4, KRP...	ARABIDOPSIS CDK INHIBITOR 1, K...		Potri.005G137500 [exp]	10.00	0.8931

Compare expression of checked genes

Potri.014G029900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.