Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G33350 359 / 5e-126 AtTic22-IV translocon at the inner envelope membrane of chloroplasts 22-IV, Tic22-like family protein (.1.2) AT3G23710 151 / 6e-44 AtTic22-III translocon at the inner envelope membrane of chloroplasts 22-III, Tic22-like family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G126800 [exp] 462 / 2e-166 AT4G33350 374 / 7e-132 translocon at the inner envelope membrane of chloroplasts 22-IV, Tic22-like family protein (.1.2) Potri.002G236000 [exp] 164 / 3e-49 AT3G23710 351 / 7e-122 translocon at the inner envelope membrane of chloroplasts 22-III, Tic22-like family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10006487 [exp] 348 / 2e-121 AT4G33350 358 / 2e-125 translocon at the inner envelope membrane of chloroplasts 22-IV, Tic22-like family protein (.1.2) Lus10009759 [exp] 347 / 8e-121 AT4G33350 355 / 3e-124 translocon at the inner envelope membrane of chloroplasts 22-IV, Tic22-like family protein (.1.2) Lus10022378 [exp] 166 / 1e-49 AT3G23710 305 / 2e-103 translocon at the inner envelope membrane of chloroplasts 22-III, Tic22-like family protein (.1) Lus10007784 [exp] 143 / 3e-41 AT3G23710 257 / 2e-85 translocon at the inner envelope membrane of chloroplasts 22-III, Tic22-like family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF04278 [poplar] [flax] Tic22 Tic22-like family
Representative CDS sequence Show only first row Show all	>Potri.014G030000.5 pacid=42763056 polypeptide=Potri.014G030000.5.p locus=Potri.014G030000 ID=Potri.014G030000.5.v4.1 annot-version=v4.1 ATGGAACCCTCTAAACCCTCAAACCCTCTCTTATCTCTCTCAACAGTCATCCATCAACACTGCCTCCGTCTCGGTGCCGAATTCTCAGCTCGCGTCAGCG ACACCACTCGATTCCTTGCTGGCAACTTCCCTCCACCTAGCCGGCTCCGCCTGGCGCCATCGCCGCCGTTCGCCTCTGTATCGCAGCCGAAACAAACAGC TAACACCGCCAATCTCAGCTCGGAACACGTGGCGAAAGCTCTGGCAGGAACAGCCGTTTACACAGTGAGCAATTCTGACAATGAGTTCGTGCTTATCTCG GATCCTAATGGAGCTAAGTCCATTGGCTTGCTTTGCTTTCGACAAGAGGACGCTGAGGCATTTCTTGCTCAGGTTAGGTTGCGGAGAAGAGAATTGCGAA GCCAAGCTAAGGTGGTGCCTATTACACTTGACCAGGTGTACATGCTGAAGGTTGAAGGAATTGCGTTTCGGTTTTTACCTGATCCAGTTCAAATAAAGAA TGCGTTAGAGCTCAAATCTGCTGATGTCAGGAGTGGGTTTGATGGAGTTCCTGTTTTCCAGTCGGACCAACTGATTGTGAAGAAGAAAAGCAAGAGATAC TGCCCAGTATATTTTCAAAAGGAAGATATAGAAAAAGAACTGTCAAAGGTTTCAAGAGCATCAAGGGGTCCGGGTCTTTCTCAACATATTATGGTCGGAA GTTTAGAGGATGTTCTGAAAAAAATGGAGATTAGTGAGAAGAATTCTGGCTGGGAAGATCTGATTTTCATTCCACCGGGTAAAAGCCATTCTCAACACAT TCAGGAGATAACTAAGGCATGA
AA sequence Show only first row Show all	>Potri.014G030000.5 pacid=42763056 polypeptide=Potri.014G030000.5.p locus=Potri.014G030000 ID=Potri.014G030000.5.v4.1 annot-version=v4.1 MEPSKPSNPLLSLSTVIHQHCLRLGAEFSARVSDTTRFLAGNFPPPSRLRLAPSPPFASVSQPKQTANTANLSSEHVAKALAGTAVYTVSNSDNEFVLIS DPNGAKSIGLLCFRQEDAEAFLAQVRLRRRELRSQAKVVPITLDQVYMLKVEGIAFRFLPDPVQIKNALELKSADVRSGFDGVPVFQSDQLIVKKKSKRY CPVYFQKEDIEKELSKVSRASRGPGLSQHIMVGSLEDVLKKMEISEKNSGWEDLIFIPPGKSHSQHIQEITKA

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G33350		AtTic22-IV	translocon at the inner envelo...		Potri.014G030000 [exp]	0	1
AT4G34960			Cyclophilin-like peptidyl-prol...		Potri.009G132800 [exp]	4.58	0.8080
					Potri.002G021900 [exp]	6.78	0.8597
AT5G10910			mraW methylase family protein ...		Potri.005G179700 [exp]	14.49	0.8790
ATCG00330		ATCG00330.1, RP...	chloroplast ribosomal protein ...		Potri.013G142336 [exp]	26.19	0.8154
AT4G27340			Met-10+ like family protein (....		Potri.011G125700 [exp]	28.14	0.8569
AT3G47590			alpha/beta-Hydrolases superfam...		Potri.018G068000 [exp]	98.78	0.7510
ATCG00270		ATCG00270.1, PS...	photosystem II reaction center...		Potri.013G142201 [exp]	142.11	0.7501
ATCG00720		ATCG00720.1, PE...	photosynthetic electron transf...		Potri.011G113784 [exp]	153.94	0.7507
AT5G37360			unknown protein		Potri.013G050300 [exp]	168.46	0.7601

Compare expression of checked genes

Potri.014G030000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.