Plant FIBer expression Database

Potri.014G030600 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues

No hit found

Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.014G030900
[exp]
37 / 0.0003 AT1G66400 41 / 2e-05 calmodulin like 23 (.1)
Potri.014G030500
[exp]
37 / 0.0005 ND /
Potri.014G030800
[exp]
36 / 0.001 AT3G03430 40 / 9e-06 Calcium-binding EF-hand family protein (.1)
Flax homologues

No hit found
PFAM info
Representative CDS sequence
>Potri.014G030600.2 pacid=42763708 polypeptide=Potri.014G030600.2.p locus=Potri.014G030600 ID=Potri.014G030600.2.v4.1 annot-version=v4.1
ATGTTGCTGGCAATTGCGCATTTACCATCGAAGAATTCAAGACTTTGTTGCAAGAACTTGATGCTGATGGAGATGGCCAGACAAGCAAACGTGTTTTCGC
CGACGCTGCCCGTTCGATCAGCGGCGAACAGTTTGCAAACAAGTTCGCGGTGGGTGCGGCCTGCTGATTCCTATGGCTGGGATCTCGTCGATGAGAATGA
TATCGATGCTCTGGTGGATTTTGCTCGGAAGCACCAGGGTTACAAAATTAACGACAGGTTATTACTTAATTACACGAACAGGCCTACAGTCACCTTCTTA
ATTTCTCATTGA
AA sequence
>Potri.014G030600.2 pacid=42763708 polypeptide=Potri.014G030600.2.p locus=Potri.014G030600 ID=Potri.014G030600.2.v4.1 annot-version=v4.1
MLLAIAHLPSKNSRLCCKNLMLMEMARQANVFSPTLPVRSAANSLQTSSRWVRPADSYGWDLVDENDIDALVDFARKHQGYKINDRLLLNYTNRPTVTFL
ISH

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
Potri.014G030600
[exp]
0 1
AT4G15450 Senescence/dehydration-associa... Potri.006G164748
[exp]
1.73 0.9548
Potri.010G132101
[exp]
2.44 0.9518
AT3G21690 MATE efflux family protein (.1... Potri.004G016400
[exp]
3.87 0.9272
Potri.002G120651
[exp]
7.74 0.8798
Potri.010G047000
[exp]
8.36 0.8933
AT5G51970 GroES-like zinc-binding alcoho... Potri.012G135000
[exp]
8.94 0.8967
AT2G02990 RNS1, ATRNS1 ribonuclease 1 (.1) Potri.013G134400
[exp]
9.16 0.9110
AT3G06350 EMB3004, MEE32 MATERNAL EFFECT EMBRYO ARREST ... Potri.013G029900
[exp]
10.58 0.9215 DHQD3
AT1G02170 AtMCP1b, ATMC1,... LSD ONE LIKE 3, ARABIDOPSIS TH... Potri.017G053000
[exp]
12.04 0.9113
Potri.010G132000
[exp]
15.55 0.8834

Potri.014G030600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.