Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G66400 40 / 2e-05 CML23 calmodulin like 23 (.1) AT3G03430 39 / 5e-05 Calcium-binding EF-hand family protein (.1) AT5G42380 40 / 6e-05 CML39, CML37 CALMODULIN LIKE 39, calmodulin like 37 (.1) AT1G18530 37 / 0.0008 EF hand calcium-binding protein family (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G030800 [exp] 168 / 3e-56 AT3G03430 40 / 9e-06 Calcium-binding EF-hand family protein (.1) Potri.014G030500 [exp] 118 / 2e-36 ND / Potri.002G127000 [exp] 108 / 2e-32 AT4G25970 44 / 2e-06 phosphatidylserine decarboxylase 3 (.1) Potri.014G030700 [exp] 95 / 4e-27 ND / Potri.007G042700 [exp] 87 / 1e-23 AT3G20410 42 / 2e-05 calmodulin-domain protein kinase 9 (.1) Potri.008G079132 [exp] 50 / 2e-09 AT1G05990 45 / 5e-07 ROOT HAIR SPECIFIC 1, EF hand calcium-binding protein family (.1) Potri.008G079066 [exp] 49 / 6e-09 AT2G43290 48 / 8e-08 multicopy suppressors of snf4 deficiency in yeast 3, Calcium-binding EF-hand family protein (.1) Potri.014G070700 [exp] 41 / 2e-05 AT1G18210 94 / 2e-24 Calcium-binding EF-hand family protein (.1.2) Potri.012G048200 [exp] 39 / 0.0001 AT1G18210 188 / 8e-62 Calcium-binding EF-hand family protein (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10021732 [exp] 124 / 1e-38 AT1G66400 49 / 3e-08 calmodulin like 23 (.1) Lus10022343 [exp] 48 / 3e-08 AT1G76650 132 / 7e-40 calmodulin-like 38 (.1.2.3) Lus10031345 [exp] 42 / 2e-05 AT1G18210 196 / 1e-64 Calcium-binding EF-hand family protein (.1.2) Lus10009564 [exp] 40 / 3e-05 AT3G07490 233 / 7e-80 calmodulin-like 3, ARF-GAP domain 11 (.1) Lus10009059 [exp] 40 / 7e-05 AT1G18210 197 / 3e-65 Calcium-binding EF-hand family protein (.1.2) Lus10042008 [exp] 38 / 0.0002 AT1G18210 138 / 1e-42 Calcium-binding EF-hand family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0220 [poplar] [flax] EF_hand PF13202 [poplar] [flax] EF-hand_5 EF hand
Representative CDS sequence Show only first row Show all	>Potri.014G030900.1 pacid=42763764 polypeptide=Potri.014G030900.1.p locus=Potri.014G030900 ID=Potri.014G030900.1.v4.1 annot-version=v4.1 ATGGCGATCAAGACTTGTTGCTTTTCGGTGGATGGAAAACGAGTCATGAGCATCGAGGAGTTCAAGCGGTGGTTAAGAAAATTTGATGCTGACAAAGATG GCAAGATAAGCAGAAAAGAACTTGAAGATGCCATAGCTGGAGGATGGTTTACAAGGTGGAAAGGCAAGCCAGGAATACGCTCTGCAGACTCCAATGGCAA TGGCTTTATTGACGAAAGTGAAATCGACAATCTCGTGGAGTTTGCTCAAAAATACCTGGGTGTAAAGATACTGCAGTTTTAG
AA sequence Show only first row Show all	>Potri.014G030900.1 pacid=42763764 polypeptide=Potri.014G030900.1.p locus=Potri.014G030900 ID=Potri.014G030900.1.v4.1 annot-version=v4.1 MAIKTCCFSVDGKRVMSIEEFKRWLRKFDADKDGKISRKELEDAIAGGWFTRWKGKPGIRSADSNGNGFIDESEIDNLVEFAQKYLGVKILQF

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G66400		CML23	calmodulin like 23 (.1)		Potri.014G030900 [exp]	0	1
AT3G61430		ATPIP1, PIP1;1,...	PLASMA MEMBRANE INTRINSIC PROT...		Potri.004G167000 [exp]	7.48	0.8480
AT4G02270		RHS13	root hair specific 13 (.1)		Potri.017G145800 [exp]	11.61	0.8213
AT1G04350			2-oxoglutarate (2OG) and Fe(II...		Potri.004G083100 [exp]	19.05	0.6448
					Potri.005G157901 [exp]	21.63	0.7116
AT4G25810		XTH23, XTR6	xyloglucan endotransglucosylas...		Potri.006G170100 [exp]	23.91	0.7940
AT5G49630		AAP6	amino acid permease 6 (.1)		Potri.006G236100 [exp]	26.24	0.7755
AT3G19920			unknown protein		Potri.007G073600 [exp]	27.23	0.7755
AT1G24020		MLP423	MLP-like protein 423 (.1.2)		Potri.011G026100 [exp]	29.49	0.7900
					Potri.008G053150 [exp]	30.01	0.7755
AT1G24020		MLP423	MLP-like protein 423 (.1.2)		Potri.011G025966 [exp]	33.49	0.7888

Compare expression of checked genes

Potri.014G030900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.