Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G42870 468 / 1e-148 ATPAH2 phosphatidic acid phosphohydrolase 2 (.1.2) AT3G09560 430 / 8e-135 ATPAH1 PHOSPHATIDIC ACID PHOSPHOHYDROLASE 1, Lipin family protein (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G081000 [exp] 448 / 1e-141 AT3G09560 870 / 0.0 PHOSPHATIDIC ACID PHOSPHOHYDROLASE 1, Lipin family protein (.1.2.3) Potri.006G214800 [exp] 441 / 6e-139 AT3G09560 845 / 0.0 PHOSPHATIDIC ACID PHOSPHOHYDROLASE 1, Lipin family protein (.1.2.3)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10021733 [exp] 453 / 3e-142 AT5G42870 432 / 5e-136 phosphatidic acid phosphohydrolase 2 (.1.2) Lus10025284 [exp] 436 / 2e-137 AT3G09560 946 / 0.0 PHOSPHATIDIC ACID PHOSPHOHYDROLASE 1, Lipin family protein (.1.2.3) Lus10009064 [exp] 398 / 4e-123 AT3G09560 894 / 0.0 PHOSPHATIDIC ACID PHOSPHOHYDROLASE 1, Lipin family protein (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF04571 [poplar] [flax] Lipin_N lipin, N-terminal conserved region CL0137 [poplar] [flax] HAD PF08235 [poplar] [flax] LNS2 LNS2 (Lipin/Ned1/Smp2)
Representative CDS sequence Show only first row Show all	>Potri.014G031000.8 pacid=42763169 polypeptide=Potri.014G031000.8.p locus=Potri.014G031000 ID=Potri.014G031000.8.v4.1 annot-version=v4.1 ATGAATGCCGTGGAGAGACTAGGAAGGTATATCACTCGAGGGGTGTACACAGTCTCTGGACCATTTCACCCTTTTGGTGGAGCTGTGGATATAATTGTAG TGGAACAGCCAGATGGGAGCTTCAAGTCATCTCCTTGGTATGTCCGGTTTGGTAAATTTCAAGGGGTTTTAAAGGCGCGAGAGAAAGTAGTGAATGTTAG TGTGAATGAAGTTGAAGCAGATTTTCACATGTATCTTGATAGGAGAGGGGAAGCTTTTTTTCTCAGAGAGGTAGAAGGGGATGAAGAGGAATCTGTTTTA TATCCTTTGTCCTCCAGTGATGAGACGGATGAGCAATCTCAAAAAAATAGGAGGCCAGCGAAGACAAAAAGTTGCAATTATGATGCCTATCAGTTGAATT CAGGCGACCAGCTTGATGGAACCAATGGGAGTATTGTGGCTAGGACTAATTCCCGCCGTTCAAGGATATTAGGGCTTGTTTTTGGACGTGGCTCATTCAA GGAGGATAGTTGCCGAGAGGGAGATGATGGTGCTGGCAAGGCAAGGACTTCACTGGAGCGTGCTGAGATTGCAGCTGATCTGTTGGAGGTGAGGTGGTCT ACTAATCTTGACCCCACTAAGCCTAGGAAAGATAATGATTCAAGGTTTTCTGCTTCAGATGCATTGGAGGGTAATGGAGATAATATGCCCGCTATTGACG ACAAAAGCCAGAAGGAGTCATCTTTGCACGATGCCATTGAAACCAATGCTGACCGCTGTATGTTGGCTGAGGAAACTGTTTCCTGCAATGTAGAGACGGG AAACGACTTGCAATCTGGCTTCATGAGCCTCGAGTGTTCTGCTGAGGAAGCTAGTGTAGAAATGTTAACTTTAGGTAGCATGGATCAAGTTGCTGAAACT TCCACAATGGCTGAAAGTGTTTTGGGTGAAAAGTGTGGGGTGGTATCTGGATTATCAAGAGATATTGATGAACTTAGTTCCCAAAATGCTGATCCTGATG TTAAAGCTAAGGGTGTCATCTCTGTGGTCTCTGCTCCCGAGTCAAAAATTTCTGGCGTCCCTGAAGCGTGTTCAGGCGAGAATTTTGGTGACAAACAGCC TTGTGATGAAAAAGATGCTTCTTTACCAGATCATGCCACTTCCGAGGAGGAGAGTGAATCCAGAGCTCAATCCTTCATTTATTGTGAGACATCAGAGAGC TCAACAATGAGGCTGAACTGTTATACTGAACAAACTCATGAAACACTGTACCTTGCTAGTGGAGGACCCAGGGAAGCACACTTTTCCGCCAAAACTTTGC ATTTGACAGCTGAGCCACTACCTGAGGACATGCTCAATCAGCAAGCTGAGGACATTGAGTTGAAGACAGAACACATTGATGCTAGCAGCAGTTTTTCTAA TCAAACAAATCCATCTTCTTGCATGCATATCCATGATAAGGTGAACCTTGAAGTTCCAATGATAGTGTCAAAATCCGATGCTCAAAAGGTTGGTGCTGAC CCTGTGCTTGGTTCGGCTGAAGAATTAGAGTCAATGAGCACTGTTACCATTTTGAGTTTTAGCAACACAGGCCAAAAAACACAAGATGTGAAAAATAACG GCAAGGAAATTATCAGGAATGAGCCCCAATCTGCAGTGGATTCATTTGGGGGTTCAGAACACTTTTATGGTAGTTGTGGTCCAACAAAAACAGCTATTAT TCCTGCCCCAGAGAGTTCAGAGGAAGAGCAGTTCATTTTCAGTGACCTTGATGAACTCAAACCAAGCAGGACTCAGTGCGAGTCGAATTTTCTTGGTGAA AAAGATGAAGAAAATGATCCTTCATTCTGTTTGGAAAGAAATGAAGAAATGGATGGGTCTTTTGATACAAGTGATGTATCTTGTTCATCCCCGGACCAGT TTGTTCAAGAGAGTAAACTGGCTGATCTTGAAACCTCGAGAGAAAATTCAAAGATAACATCAAGTCCCATTGGCATTCCCAAAGTTCATAGTGTTACTGA TGCTGAAGTCTCTAGGCTGGTTGAATCGTTACCCAACATGAGGTCTCGTTTTGACAACATGGATGCAAATGATCTCCATTTTCCCTTAAGCCACTCGCTA GACTCCATTTGCAAATCCTTGGAGGAGACATTATGTAGAACAAATGAGTCAGAGTGTGTAAAGTTAGATACAGAAAATGAAATCCAATCAGCAAAGGAGC ATTCTAATATTGAAGGTATTCACAATTCAGAAGATCTTGAAAATTCTGTTTCCAGCTCTACTTTTGGGGATTCATCGAAAGTGATTGTTGCTTCTGGCGG AAGCTGGAGAATTTGGCCTTTCTCTTTCAAAAGATCAAGGTCTAGGAAGATTTCACAGCAAGCTCTAAATGATACCAGAAGTTCTGTCTCTGAGAACATG TCAGATTGCAACCTTCACACAGATAAAGATTACGGTGTAATTAATCCTAAGGTCACCAAAAAAATGGTAAGGGCCAATACTCCAACATCTGAACAACTGG CATCCTTGAATCTGAAGGAAGGGAGGAATGTGGTGACCTTCACGTTTTCCACTGCAATGCTGGGGAAGCAGCAGGTTGATGCAAGAATTTATCTGTGGAA ATGGAACACTCACATAGTGATCTCCGATGTTGATGGGACGATTACAAGATCGGATGTTCTAGGTCAGTTCATGCCTATGGTTGGGGTAGACTGGTCACAA ATGGGCGTTGCACATTTGTTTTGTGCTATTAAGGAAAACGGCTATCAATTACTTTTTCTAAGTGCACGTGCAATTTCTCAAGCCTATCATACTAGACAAT TTCTAGTCAACCTCAAGCAGGATGGGAAGGCTTTACCAGATGGTCCTATTGTTATATCTCCCGATGGAGTTTTTCCTTCTCTATTTCGCGAAGTCATTAG AAGGGCTCCTCATGAATTCAAGATCGCATGTTTGGAGGATATCAGGGCTTTGTTTCCTTCTGATCGCAATCCTTTCTATGCTGGTTTTGGAAATAGAGAC ACTGATGAGATAAGCTACCTCAAGGTTGGAATCCCGAAGGGAAAAATCTTCATCATTAATCCGAAGGGTGAAGTTGCTGTGAACCGCCGTGTTGACACAA AATCATATACTTCACTTCATGCTCTTGTGCATGGCATGTTTCCACCCATGACATCATTTGAGCAGGAGGATTTTAATTCATGGAATTACTGGAGATTGCC TCCTCCAGTTATTGACATATGA
AA sequence Show only first row Show all	>Potri.014G031000.8 pacid=42763169 polypeptide=Potri.014G031000.8.p locus=Potri.014G031000 ID=Potri.014G031000.8.v4.1 annot-version=v4.1 MNAVERLGRYITRGVYTVSGPFHPFGGAVDIIVVEQPDGSFKSSPWYVRFGKFQGVLKAREKVVNVSVNEVEADFHMYLDRRGEAFFLREVEGDEEESVL YPLSSSDETDEQSQKNRRPAKTKSCNYDAYQLNSGDQLDGTNGSIVARTNSRRSRILGLVFGRGSFKEDSCREGDDGAGKARTSLERAEIAADLLEVRWS TNLDPTKPRKDNDSRFSASDALEGNGDNMPAIDDKSQKESSLHDAIETNADRCMLAEETVSCNVETGNDLQSGFMSLECSAEEASVEMLTLGSMDQVAET STMAESVLGEKCGVVSGLSRDIDELSSQNADPDVKAKGVISVVSAPESKISGVPEACSGENFGDKQPCDEKDASLPDHATSEEESESRAQSFIYCETSES STMRLNCYTEQTHETLYLASGGPREAHFSAKTLHLTAEPLPEDMLNQQAEDIELKTEHIDASSSFSNQTNPSSCMHIHDKVNLEVPMIVSKSDAQKVGAD PVLGSAEELESMSTVTILSFSNTGQKTQDVKNNGKEIIRNEPQSAVDSFGGSEHFYGSCGPTKTAIIPAPESSEEEQFIFSDLDELKPSRTQCESNFLGE KDEENDPSFCLERNEEMDGSFDTSDVSCSSPDQFVQESKLADLETSRENSKITSSPIGIPKVHSVTDAEVSRLVESLPNMRSRFDNMDANDLHFPLSHSL DSICKSLEETLCRTNESECVKLDTENEIQSAKEHSNIEGIHNSEDLENSVSSSTFGDSSKVIVASGGSWRIWPFSFKRSRSRKISQQALNDTRSSVSENM SDCNLHTDKDYGVINPKVTKKMVRANTPTSEQLASLNLKEGRNVVTFTFSTAMLGKQQVDARIYLWKWNTHIVISDVDGTITRSDVLGQFMPMVGVDWSQ MGVAHLFCAIKENGYQLLFLSARAISQAYHTRQFLVNLKQDGKALPDGPIVISPDGVFPSLFREVIRRAPHEFKIACLEDIRALFPSDRNPFYAGFGNRD TDEISYLKVGIPKGKIFIINPKGEVAVNRRVDTKSYTSLHALVHGMFPPMTSFEQEDFNSWNYWRLPPPVIDI

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G42870		ATPAH2	phosphatidic acid phosphohydro...		Potri.014G031000 [exp]	0	1
AT5G02880		UPL4	ubiquitin-protein ligase 4 (.1...		Potri.006G132000 [exp]	1.00	0.8215
AT1G63700		EMB71, MAPKKK4,...	YODA, MAP KINASE KINASE KINASE...		Potri.015G146700 [exp]	3.31	0.7675
AT3G49600		SUP32, ATUBP26,...	ubiquitin-specific protease 26...		Potri.005G179500 [exp]	5.00	0.7793	UBP26.2
AT5G07920		ATDGK1, DGK1	DIACYLGLYCEROL KINASE 1, diacy...		Potri.012G066300 [exp]	5.09	0.7598	ATDGK1.1
AT5G57250			Pentatricopeptide repeat (PPR)...		Potri.018G143800 [exp]	6.32	0.7812	CYP71.3
AT3G04740		MED14, SWP, ATM...	STRUWWELPETER, ARABIDOPSIS MED...		Potri.005G053700 [exp]	7.34	0.7954	Pt-SWP.2
AT3G48195			Phox (PX) domain-containing pr...		Potri.015G078300 [exp]	8.00	0.7200
AT1G22620		ATSAC1	suppressor of actin 1, Phospho...		Potri.013G107950 [exp]	8.36	0.7575
AT3G46960			RNA helicase, ATP-dependent, S...		Potri.009G041200 [exp]	8.83	0.7792
AT5G43990		SDG18, SUVR2	SET DOMAIN PROTEIN 18, SET-dom...		Potri.002G257400 [exp]	9.59	0.7991

Compare expression of checked genes

Potri.014G031000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.