Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G42700 180 / 4e-57 B3 AP2/B3-like transcriptional factor family protein (.1) AT3G19184 164 / 4e-50 B3 AP2/B3-like transcriptional factor family protein (.1) AT5G58280 100 / 2e-25 B3 AP2/B3-like transcriptional factor family protein (.1) AT4G33280 50 / 5e-07 B3 REM16 AP2/B3-like transcriptional factor family protein (.1) AT1G26680 46 / 1e-05 B3 REM17 transcriptional factor B3 family protein (.1) AT2G24645 45 / 2e-05 Transcriptional factor B3 family protein (.1) AT4G31640 45 / 2e-05 B3 REM5 transcriptional factor B3 family protein (.1) AT4G31660 44 / 4e-05 B3 REM7 AP2/B3-like transcriptional factor family protein (.1) AT5G18000 43 / 6e-05 B3 VDD VERDANDI (.1) AT4G31680 43 / 0.0001 B3 REM8 Transcriptional factor B3 family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G031600 [exp] 333 / 6e-117 AT5G42700 156 / 1e-47 AP2/B3-like transcriptional factor family protein (.1) Potri.009G103100 [exp] 186 / 1e-58 AT3G19184 232 / 5e-76 AP2/B3-like transcriptional factor family protein (.1) Potri.009G103200 [exp] 153 / 6e-46 AT3G19184 206 / 8e-66 AP2/B3-like transcriptional factor family protein (.1) Potri.004G141900 [exp] 122 / 9e-35 AT3G19184 137 / 7e-40 AP2/B3-like transcriptional factor family protein (.1) Potri.018G140700 [exp] 120 / 9e-32 AT3G19184 140 / 2e-38 AP2/B3-like transcriptional factor family protein (.1) Potri.009G103400 [exp] 116 / 3e-30 AT3G19184 120 / 5e-31 AP2/B3-like transcriptional factor family protein (.1) Potri.005G137600 [exp] 115 / 1e-29 AT3G19184 135 / 2e-36 AP2/B3-like transcriptional factor family protein (.1) Potri.007G042500 [exp] 115 / 1e-29 AT3G19184 134 / 6e-36 AP2/B3-like transcriptional factor family protein (.1) Potri.004G141800 [exp] 114 / 3e-29 AT3G19184 119 / 3e-30 AP2/B3-like transcriptional factor family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10006483 [exp] 222 / 4e-73 AT5G42700 242 / 4e-81 AP2/B3-like transcriptional factor family protein (.1) Lus10009764 [exp] 219 / 7e-72 AT5G42700 229 / 3e-76 AP2/B3-like transcriptional factor family protein (.1) Lus10014044 [exp] 174 / 2e-53 AT3G19184 250 / 2e-82 AP2/B3-like transcriptional factor family protein (.1) Lus10019870 [exp] 166 / 7e-50 AT3G19184 253 / 8e-83 AP2/B3-like transcriptional factor family protein (.1) Lus10032098 [exp] 118 / 1e-30 AT3G19184 130 / 7e-34 AP2/B3-like transcriptional factor family protein (.1) Lus10007522 [exp] 115 / 4e-30 AT5G58280 206 / 9e-64 AP2/B3-like transcriptional factor family protein (.1) Lus10017434 [exp] 114 / 7e-30 AT5G58280 205 / 7e-64 AP2/B3-like transcriptional factor family protein (.1) Lus10035416 [exp] 112 / 7e-29 AT3G19184 129 / 2e-34 AP2/B3-like transcriptional factor family protein (.1) Lus10019872 [exp] 108 / 4e-27 AT3G19184 117 / 2e-30 AP2/B3-like transcriptional factor family protein (.1) Lus10019873 [exp] 106 / 2e-26 AT5G42700 121 / 6e-32 AP2/B3-like transcriptional factor family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0405 [poplar] [flax] DNA_b-psBarrel PF02362 [poplar] [flax] B3 B3 DNA binding domain
Representative CDS sequence Show only first row Show all	>Potri.014G031700.2 pacid=42763368 polypeptide=Potri.014G031700.2.p locus=Potri.014G031700 ID=Potri.014G031700.2.v4.1 annot-version=v4.1 ATGGTGGCAAAGATATCAGCATATGAAGAAAGTCGCCGAAAGAGAATGGAAGAGAACAAGAAAAGAATGGAAGCCCTCAATCTCCACAAGCTTTCTCGAG CTCTTAAAATTTCCACCCCTACCAAATCCTCTCCGATGAAACGCTCAAAACCTCGAGTAGTCGAGAAACAAGTGGTTGTGGTTAGGAGGTCCAGTCGTGT CGCGAACAAGCCTGCTCCTTTCTTTAAAGAAGTTGTTCTTGATCGAGTGGTGATACCAAGAAGGATTTCCAAGGCAAGAGATTTGTCAAACCGGGTGTAT GCTACTGATGAAGCCAGGGCAAAGGCTATGGAGAAAGCAGAAAAGCTACAATCTGATTTAGGATCTGACTATCCGATCTTTATAAAATCAATGCTTCAAT CCCATGTTACTGGTGGATTTTGGCTGGGTCTTCCAGTCGACTTCTGCAGAAGGAACCTTCCAAGGCGAGACGATGTCATCACTTTGATAGATGAAGAGGC AGATGAGTATCAAGTTATATATTTAGCACGAAAGAATGGACTAAGTGGTGGATGGAAAGGGTTTGCCGTTGCTCATGGACTGCTAGATGGAGATGCTGTG GTTTTTCAGTTAATCAAGCCTACAGCATGCAAGGTGGTATATATCATAAGGGTGAATGGCTCGGAACAGGGCAATAGTCTTTGA
AA sequence Show only first row Show all	>Potri.014G031700.2 pacid=42763368 polypeptide=Potri.014G031700.2.p locus=Potri.014G031700 ID=Potri.014G031700.2.v4.1 annot-version=v4.1 MVAKISAYEESRRKRMEENKKRMEALNLHKLSRALKISTPTKSSPMKRSKPRVVEKQVVVVRRSSRVANKPAPFFKEVVLDRVVIPRRISKARDLSNRVY ATDEARAKAMEKAEKLQSDLGSDYPIFIKSMLQSHVTGGFWLGLPVDFCRRNLPRRDDVITLIDEEADEYQVIYLARKNGLSGGWKGFAVAHGLLDGDAV VFQLIKPTACKVVYIIRVNGSEQGNSL

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G42700	B3		AP2/B3-like transcriptional fa...		Potri.014G031700 [exp]	0	1
AT3G23670		PAKRP1L ,KINESI...	phragmoplast-associated kinesi...		Potri.002G235500 [exp]	2.44	0.9576	PAKRP1.2
AT1G80370		CYCA2;4	Cyclin A2;4 (.1)		Potri.001G177100 [exp]	3.60	0.9629
AT1G26760		SDG35, ATXR1	SET domain protein 35 (.1)		Potri.008G089500 [exp]	5.09	0.9624	SDG942
AT3G08900		RGP3	reversibly glycosylated polype...		Potri.008G097600 [exp]	6.92	0.9498	Pt-RGP3.4
AT1G23790			Plant protein of unknown funct...		Potri.008G192300 [exp]	7.07	0.9513
AT3G19184	B3		AP2/B3-like transcriptional fa...		Potri.009G103200 [exp]	7.74	0.9575
AT4G37110			Zinc-finger domain of monoamin...		Potri.012G044400 [exp]	9.32	0.9415
AT3G06840			unknown protein		Potri.010G010600 [exp]	11.61	0.9422
AT2G20590			Reticulon family protein (.1.2...		Potri.007G137700 [exp]	13.03	0.9570
AT3G50120			Plant protein of unknown funct...		Potri.016G039700 [exp]	14.21	0.9120

Compare expression of checked genes

Potri.014G031700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.