Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G10130 201 / 1e-66 DNAJ heat shock N-terminal domain-containing protein (.1) AT1G56300 65 / 2e-13 Chaperone DnaJ-domain superfamily protein (.1) AT3G13310 61 / 8e-12 Chaperone DnaJ-domain superfamily protein (.1) AT5G06910 54 / 1e-08 ATJ6, EMB1393 J-domain protein 6 (.1) AT4G13830 51 / 3e-08 J20 DNAJ-like 20 (.1.2) AT1G71000 51 / 4e-08 Chaperone DnaJ-domain superfamily protein (.1) AT3G62600 52 / 6e-08 ATERDJ3B DNAJ heat shock family protein (.1) AT1G80030 50 / 2e-07 Molecular chaperone Hsp40/DnaJ family protein (.1.2.3) AT4G37480 50 / 2e-07 Chaperone DnaJ-domain superfamily protein (.1) AT1G74250 50 / 2e-07 DNAJ heat shock N-terminal domain-containing protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G010800 [exp] 61 / 9e-12 AT1G56300 200 / 9e-67 Chaperone DnaJ-domain superfamily protein (.1) Potri.005G020300 [exp] 57 / 2e-10 AT1G56300 217 / 2e-73 Chaperone DnaJ-domain superfamily protein (.1) Potri.005G113100 [exp] 57 / 2e-10 AT2G17880 139 / 6e-43 Chaperone DnaJ-domain superfamily protein (.1) Potri.011G166500 [exp] 56 / 8e-10 AT3G13310 115 / 4e-33 Chaperone DnaJ-domain superfamily protein (.1) Potri.005G078801 [exp] 53 / 5e-09 AT4G13830 88 / 4e-22 DNAJ-like 20 (.1.2) Potri.014G122600 [exp] 54 / 6e-09 AT3G62600 565 / 0.0 DNAJ heat shock family protein (.1) Potri.001G469600 [exp] 53 / 6e-09 AT3G13310 120 / 4e-35 Chaperone DnaJ-domain superfamily protein (.1) Potri.002G198000 [exp] 54 / 7e-09 AT3G62600 551 / 0.0 DNAJ heat shock family protein (.1) Potri.007G088900 [exp] 51 / 3e-08 AT4G13830 91 / 3e-23 DNAJ-like 20 (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10014584 [exp] 57 / 6e-10 AT3G62600 521 / 0.0 DNAJ heat shock family protein (.1) Lus10032100 [exp] 57 / 7e-10 AT3G62600 526 / 0.0 DNAJ heat shock family protein (.1) Lus10022297 [exp] 57 / 9e-10 AT3G62600 522 / 0.0 DNAJ heat shock family protein (.1) Lus10029862 [exp] 55 / 1e-09 AT1G56300 201 / 9e-67 Chaperone DnaJ-domain superfamily protein (.1) Lus10020685 [exp] 55 / 2e-09 AT1G56300 200 / 1e-66 Chaperone DnaJ-domain superfamily protein (.1) Lus10019286 [exp] 54 / 1e-08 AT4G37480 526 / 0.0 Chaperone DnaJ-domain superfamily protein (.1) Lus10011536 [exp] 54 / 1e-08 AT4G37480 484 / 5e-168 Chaperone DnaJ-domain superfamily protein (.1) Lus10002356 [exp] 52 / 1e-08 AT4G13830 144 / 1e-43 DNAJ-like 20 (.1.2) Lus10041254 [exp] 53 / 2e-08 AT5G25530 464 / 2e-165 DNAJ heat shock family protein (.1) Lus10021961 [exp] 53 / 2e-08 AT5G25530 468 / 7e-167 DNAJ heat shock family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0392 [poplar] [flax] Chaperone-J PF00226 [poplar] [flax] DnaJ DnaJ domain CL0167 [poplar] [flax] Zn_Beta_Ribbon PF05207 [poplar] [flax] zf-CSL CSL zinc finger
Representative CDS sequence Show only first row Show all	>Potri.014G032000.1 pacid=42763403 polypeptide=Potri.014G032000.1.p locus=Potri.014G032000 ID=Potri.014G032000.1.v4.1 annot-version=v4.1 ATGCTTCATTGGAAGAATTCAATCCGAGAAACCTACTATGATGTTTTGTCTGTAAAAGAAGATGCTAGTTATGTAGAAATCCGGACAAGCTACCGATCTG CCATACTCAATTATCATCCTGATAAATTGCAAAATACACGTCAGGCGTCTGATCCTGAAGATGAATCGGATGATAGATTTATGAAGGTGCAGAAGGCTTG GGAAATCCTTGGGAACTCCATGTCTCGTGCAGTTTATGATAGCAAGCTGCGAGCTTTGAGGCAAGACACTGAAGTTTCAGAAGATATCAGTTTAGAGGAA ATGATGGTTGAAGACAACGGAGAAATCTTTGAGATGTTTTACCAGTGCCAATGTGGTGATTATTTTTCCATTGATTCATCGGAGTTTGAGAAAATGGGAT ACACGTTATCGAGGGATGAGTGCCATATATCAATCCAGAAACCCGATGCTTTGCCAGCATCAGTTGTTCTTCCTTGTGGTTCTTGTTCACTACAAGTTCG TCTTTTGATTAATGCAGACATTAAGGTACCGATCGGTGATAATTTGTAA
AA sequence Show only first row Show all	>Potri.014G032000.1 pacid=42763403 polypeptide=Potri.014G032000.1.p locus=Potri.014G032000 ID=Potri.014G032000.1.v4.1 annot-version=v4.1 MLHWKNSIRETYYDVLSVKEDASYVEIRTSYRSAILNYHPDKLQNTRQASDPEDESDDRFMKVQKAWEILGNSMSRAVYDSKLRALRQDTEVSEDISLEE MMVEDNGEIFEMFYQCQCGDYFSIDSSEFEKMGYTLSRDECHISIQKPDALPASVVLPCGSCSLQVRLLINADIKVPIGDNL

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G10130			DNAJ heat shock N-terminal dom...		Potri.014G032000 [exp]	0	1
AT3G12180			Cornichon family protein (.1)		Potri.006G057300 [exp]	3.00	0.7244
AT3G15660		ATGRX4	A. THALIANA GLUTAREDOXIN 4, gl...		Potri.003G060600 [exp]	3.87	0.7378
AT4G27750		ISI1	IMPAIRED SUCROSE INDUCTION 1, ...		Potri.015G029300 [exp]	5.56	0.6231
AT3G58520			Ubiquitin carboxyl-terminal hy...		Potri.006G195900 [exp]	7.48	0.7228
AT3G22470			Pentatricopeptide repeat (PPR)...		Potri.007G068400 [exp]	8.36	0.7221
AT3G61170			Tetratricopeptide repeat (TPR)...		Potri.002G155100 [exp]	10.48	0.6705
					Potri.019G016120 [exp]	10.58	0.7001
AT1G65032			unknown protein		Potri.005G094100 [exp]	11.74	0.7289
AT5G27720		LSM4, EMB1644	SM-like protein 4, embryo defe...		Potri.002G205700 [exp]	32.64	0.6665	Pt-GRP2.1
AT5G66240			Transducin/WD40 repeat-like su...		Potri.005G114600 [exp]	35.88	0.6297

Compare expression of checked genes

Potri.014G032000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.