Plant FIBer expression Database

Potri.014G032100 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues

No hit found

Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10009766
[exp]
125 / 6e-38 ND /
Lus10006482
[exp]
119 / 1e-33 AT4G33380 194 / 9e-60 unknown protein
PFAM info
Representative CDS sequence
>Potri.014G032100.1 pacid=42763107 polypeptide=Potri.014G032100.1.p locus=Potri.014G032100 ID=Potri.014G032100.1.v4.1 annot-version=v4.1
ATGGGTTCCGGAGAAGGGAGAACTCACTGGAGCGTTTTTGAGGGAGTGAGAAGCATGGCCTCATCAACCCCAGAAACTCTCATGGCTGAAATCGACACTG
CTATCGGCAAATTGGAATACAGCCGTGCCACTGCACTTCTCGACTCTCCATCACCAACACCCACCAACACATCAAAGACTAGCATGAGCTCCGATTCAGG
TGCAAATCCTCAATACGATGTCAAAATGGCAGATGGGGCTTACAGGGCAGGCTGTGCATCCTTGGCTGCAGGGAAACTTGATGAGGCTCTTCAATATTTG
AACGTCTCTCTCTCGAAATGTCCTCCTGATAAAACCTCTGCTGTTGCCAAGCTTCAGTCTCTTATTTCTCTTACTTCACAGCAACTCCAGAAATTGCCCA
CTTGA
AA sequence
>Potri.014G032100.1 pacid=42763107 polypeptide=Potri.014G032100.1.p locus=Potri.014G032100 ID=Potri.014G032100.1.v4.1 annot-version=v4.1
MGSGEGRTHWSVFEGVRSMASSTPETLMAEIDTAIGKLEYSRATALLDSPSPTPTNTSKTSMSSDSGANPQYDVKMADGAYRAGCASLAAGKLDEALQYL
NVSLSKCPPDKTSAVAKLQSLISLTSQQLQKLPT

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
Potri.014G032100
[exp]
0 1
AT3G13677 unknown protein Potri.001G406200
[exp]
1.00 0.8691
AT1G47410 unknown protein Potri.014G032300
[exp]
3.00 0.8523
AT3G15518 unknown protein Potri.001G404500
[exp]
8.66 0.8209
AT1G23380 HD KNAT6S, KNAT6L,... KNOTTED1-like homeobox gene 6 ... Potri.010G043500
[exp]
10.00 0.8312
AT1G56700 Peptidase C15, pyroglutamyl pe... Potri.005G005800
[exp]
11.61 0.7918
AT4G16400 unknown protein Potri.006G017900
[exp]
15.71 0.7687
AT1G48300 unknown protein Potri.010G003200
[exp]
16.00 0.8015
AT5G20060 alpha/beta-Hydrolases superfam... Potri.018G030200
[exp]
16.06 0.7374
AT2G33310 AUX_IAA IAA13 auxin-induced protein 13 (.1.2... Potri.008G172400
[exp]
16.15 0.7534 IAA12.1
AT4G32480 Protein of unknown function (D... Potri.019G074400
[exp]
16.43 0.7524

Potri.014G032100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.