Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G23540 563 / 0 Mov34/MPN/PAD-1 family protein (.1.2) AT1G71230 124 / 8e-33 CSN5B, AJH2 COP9-signalosome 5B (.1) AT1G22920 121 / 1e-31 CSN5A, JAB1, AJH1 ARABIDOPSIS JAB1 HOMOLOG 1, COP9 signalosome 5A (.1.2) AT1G10600 54 / 1e-08 AMSH2 associated molecule with the SH3 domain of STAM 2 (.1.2.3) AT1G80210 49 / 2e-06 BRCC36A, AtBRCC36A BRCA1/BRCA2-containing complex 36 homolog A, Mov34/MPN/PAD-1 family protein (.1.2) AT1G48790 48 / 6e-06 AMSH1 associated molecule with the SH3 domain of STAM 1 (.1) AT3G06820 47 / 8e-06 BRCC36B, AtBRCC36B BRCA1/BRCA2-containing complex 36 homolog B, Mov34/MPN/PAD-1 family protein (.1.2) AT3G11270 44 / 0.0001 MEE34 maternal effect embryo arrest 34, Mov34/MPN/PAD-1 family protein (.1.2) AT4G16144 42 / 0.0006 AMSH3 associated molecule with the SH3 domain of STAM 3 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G127900 [exp] 593 / 0 AT5G23540 567 / 0.0 Mov34/MPN/PAD-1 family protein (.1.2) Potri.018G006100 [exp] 125 / 4e-33 AT1G22920 589 / 0.0 ARABIDOPSIS JAB1 HOMOLOG 1, COP9 signalosome 5A (.1.2) Potri.006G275100 [exp] 125 / 5e-33 AT1G22920 565 / 0.0 ARABIDOPSIS JAB1 HOMOLOG 1, COP9 signalosome 5A (.1.2) Potri.010G041200 [exp] 49 / 7e-07 AT1G10600 256 / 3e-87 associated molecule with the SH3 domain of STAM 2 (.1.2.3) Potri.015G045800 [exp] 48 / 5e-06 AT1G48790 581 / 0.0 associated molecule with the SH3 domain of STAM 1 (.1) Potri.010G141100 [exp] 42 / 0.0003 AT4G16144 697 / 0.0 associated molecule with the SH3 domain of STAM 3 (.1) Potri.001G172800 [exp] 41 / 0.0006 AT1G80210 484 / 2e-170 BRCA1/BRCA2-containing complex 36 homolog A, Mov34/MPN/PAD-1 family protein (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10042663 [exp] 575 / 0 AT5G23540 616 / 0.0 Mov34/MPN/PAD-1 family protein (.1.2) Lus10021746 [exp] 573 / 0 AT5G23540 618 / 0.0 Mov34/MPN/PAD-1 family protein (.1.2) Lus10031085 [exp] 567 / 0 AT5G23540 599 / 0.0 Mov34/MPN/PAD-1 family protein (.1.2) Lus10035470 [exp] 564 / 0 AT5G23540 601 / 0.0 Mov34/MPN/PAD-1 family protein (.1.2) Lus10012493 [exp] 186 / 6e-59 AT5G23540 219 / 2e-73 Mov34/MPN/PAD-1 family protein (.1.2) Lus10026947 [exp] 125 / 6e-33 AT1G71230 597 / 0.0 COP9-signalosome 5B (.1) Lus10011716 [exp] 112 / 2e-31 AT5G23540 115 / 1e-33 Mov34/MPN/PAD-1 family protein (.1.2) Lus10012494 [exp] 101 / 5e-27 AT5G23540 100 / 1e-27 Mov34/MPN/PAD-1 family protein (.1.2) Lus10011717 [exp] 100 / 2e-26 AT5G23540 102 / 2e-28 Mov34/MPN/PAD-1 family protein (.1.2) Lus10020149 [exp] 95 / 2e-21 AT2G07560 469 / 1e-155 H\(+\)-ATPase 6, H\(+\)-ATPase 6, H(+)-ATPase 6 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF13012 [poplar] [flax] MitMem_reg Maintenance of mitochondrial structure and function CL0366 [poplar] [flax] JAB PF14464 [poplar] [flax] Prok-JAB Prokaryotic homologs of the JAB domain
Representative CDS sequence Show only first row Show all	>Potri.014G032900.2 pacid=42762335 polypeptide=Potri.014G032900.2.p locus=Potri.014G032900 ID=Potri.014G032900.2.v4.1 annot-version=v4.1 ATGTCAGGTATGGAGAGACTGCAAAGAATGTTTGCAGGTGCAGGAGGTGCGTTGGGCCATCCACCACCAGATTCTCCAACACTTGATTCCTCTGAGCAGG TCTACATCTCCTCTCTTGCCCTCCTCAAAATGCTTAAACACGGCAGAGCTGGGGTACCGATGGAAGTTATGGGTTTGATGCTTGGAGAGTTTGTGGATGA ATATACAGTTCGCGTTGTTGATGTATTCGCCATGCCACAAAGTGGTACTGGTGTGAGTGTTGAAGCTGTTGATCATGTGTTTCAGACTAATATGATTGAC ATGCTTAAACAGACTGGAAGGCCGGAGATGGTTGTGGGGTGGTACCATTCACATCCTGGATTTGGCTGTTGGCTTTCCGGTGTTGATATAAATACCCAGC AGAGTTTTGAAGCTCTGAATCAACGTGCTGTGGCAGTGGTCGTGGATCCAATCCAGAGTGTTAAAGGAAAGGTGGTAATTGATGCCTTCCGTTTGATTAA CCCACAAACAATGATGCTTGGCCAAGAACCACGGCAGACAACTTCCAATCTTGGGCATCTGAATAAGCCATCCATTCAAGCATTGATCCATGGATTGAAT AGACATTATTACTCAATAGCCATTAATTACAGAAAGAATGAACTTGAGGAAAAGATGCTTCTTAATCTTCACAAGAAGAAATGGACAGACGGTTTGACAC TTAAGCGGTTTGATACTCATTCAAAAACCAATGAGCAGACTGTTCAGGAAATGCTGAACTTAGCTATTAAATACAACAAGGCTGTGCAAGAGGAAGATGA GCTGCCACCTGAAAAGCTGGCAATTGCGAACGTGGGAAGGCAAGATGCGAAGAAACACCTTGAAGAACATGTCTCAAACTTAATGTCTTCCAACATAGTT CAGACATTGGGTACTATGCTCGACACGGTTGTGTTCTAG
AA sequence Show only first row Show all	>Potri.014G032900.2 pacid=42762335 polypeptide=Potri.014G032900.2.p locus=Potri.014G032900 ID=Potri.014G032900.2.v4.1 annot-version=v4.1 MSGMERLQRMFAGAGGALGHPPPDSPTLDSSEQVYISSLALLKMLKHGRAGVPMEVMGLMLGEFVDEYTVRVVDVFAMPQSGTGVSVEAVDHVFQTNMID MLKQTGRPEMVVGWYHSHPGFGCWLSGVDINTQQSFEALNQRAVAVVVDPIQSVKGKVVIDAFRLINPQTMMLGQEPRQTTSNLGHLNKPSIQALIHGLN RHYYSIAINYRKNELEEKMLLNLHKKKWTDGLTLKRFDTHSKTNEQTVQEMLNLAIKYNKAVQEEDELPPEKLAIANVGRQDAKKHLEEHVSNLMSSNIV QTLGTMLDTVVF

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G23540			Mov34/MPN/PAD-1 family protein...		Potri.014G032900 [exp]	0	1
AT3G05000			Transport protein particle (TR...		Potri.013G031000 [exp]	1.00	0.9199
AT5G65430		14-3-3KAPPA, GF...	14-3-3 PROTEIN G-BOX FACTOR14 ...		Potri.002G103800 [exp]	1.73	0.9052	VF14.1
AT2G31680		AtRABA5d	RAB GTPase homolog A5D (.1)		Potri.002G231800 [exp]	2.82	0.8834
AT4G32150		ATVAMP711, VAMP...	vesicle-associated membrane pr...		Potri.018G025800 [exp]	6.00	0.8916	VAMP712.1
AT1G10030		ERG28	homolog of yeast ergosterol28 ...		Potri.002G112700 [exp]	6.24	0.8771
AT5G20520		WAV2	WAVY GROWTH 2, alpha/beta-Hydr...		Potri.018G064800 [exp]	6.55	0.8436
AT1G78300		14-3-3OMEGA, GF...	14-3-3 PROTEIN G-BOX FACTOR14 ...		Potri.002G099800 [exp]	6.63	0.9091	Pt-CHI.3
AT1G48440			B-cell receptor-associated 31-...		Potri.012G042700 [exp]	7.21	0.8365
AT5G18800			Cox19-like CHCH family protein...		Potri.008G196600 [exp]	8.06	0.9041
AT1G01170			Protein of unknown function (D...		Potri.016G055200 [exp]	12.64	0.8685

Compare expression of checked genes

Potri.014G032900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.