Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G26560 533 / 0 PLP2, PLAIIA, PLA2A PATATIN-LIKE PROTEIN 2, phospholipase A 2A (.1) AT4G37070 445 / 2e-155 AtPLAIVA, PLP1, PLAIVA ,PLA IVA phospholipase A IVA, Acyl transferase/acyl hydrolase/lysophospholipase superfamily protein (.1.2.3.4) AT4G37050 435 / 3e-151 PLAIII{beta}, AtPLAIVC, PLP4, PLAV ,PLA V patatin-related phospholipase III beta, phospholipase A IVC, PATATIN-like protein 4 (.1) AT4G37060 426 / 8e-148 AtPLAIVB, PLP5, PLAIVB ,PLA IVB phospholipase A IVB, PATATIN-like protein 5 (.1.2) AT5G43590 370 / 3e-126 Acyl transferase/acyl hydrolase/lysophospholipase superfamily protein (.1) AT2G39220 132 / 7e-34 PLP6, PLAIIB ,PLA IIB PATATIN-like protein 6 (.1) AT3G54950 125 / 1e-31 pPLAIIIbeta, PLP7, PLAIIIA ,PLA IIIA patatin-related phospholipase IIIbeta, PATATIN-LIKE PROTEIN 7, patatin-like protein 6 (.1) AT4G29800 117 / 2e-28 PLP8, PLAIVD ,PLA IVD PATATIN-like protein 8 (.1.2) AT3G63200 92 / 3e-20 PLP9, PLAIIIB ,PLA IIIB PATATIN-like protein 9 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G033400 [exp] 800 / 0 AT2G26560 530 / 0.0 PATATIN-LIKE PROTEIN 2, phospholipase A 2A (.1) Potri.014G033000 [exp] 794 / 0 AT2G26560 526 / 0.0 PATATIN-LIKE PROTEIN 2, phospholipase A 2A (.1) Potri.014G033600 [exp] 784 / 0 AT2G26560 535 / 0.0 PATATIN-LIKE PROTEIN 2, phospholipase A 2A (.1) Potri.014G033900 [exp] 782 / 0 AT2G26560 536 / 0.0 PATATIN-LIKE PROTEIN 2, phospholipase A 2A (.1) Potri.014G034000 [exp] 769 / 0 AT2G26560 529 / 0.0 PATATIN-LIKE PROTEIN 2, phospholipase A 2A (.1) Potri.014G033500 [exp] 691 / 0 AT2G26560 495 / 1e-175 PATATIN-LIKE PROTEIN 2, phospholipase A 2A (.1) Potri.017G134001 [exp] 674 / 0 AT2G26560 525 / 0.0 PATATIN-LIKE PROTEIN 2, phospholipase A 2A (.1) Potri.017G134051 [exp] 674 / 0 AT2G26560 525 / 0.0 PATATIN-LIKE PROTEIN 2, phospholipase A 2A (.1) Potri.017G133951 [exp] 674 / 0 AT2G26560 525 / 0.0 PATATIN-LIKE PROTEIN 2, phospholipase A 2A (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10009340 [exp] 441 / 1e-153 AT4G37070 489 / 7e-173 phospholipase A IVA, Acyl transferase/acyl hydrolase/lysophospholipase superfamily protein (.1.2.3.4) Lus10000279 [exp] 437 / 1e-151 AT4G37070 486 / 1e-170 phospholipase A IVA, Acyl transferase/acyl hydrolase/lysophospholipase superfamily protein (.1.2.3.4) Lus10019637 [exp] 437 / 1e-151 AT4G37070 486 / 1e-170 phospholipase A IVA, Acyl transferase/acyl hydrolase/lysophospholipase superfamily protein (.1.2.3.4) Lus10040394 [exp] 131 / 1e-33 AT2G39220 642 / 0.0 PATATIN-like protein 6 (.1) Lus10041402 [exp] 128 / 1e-32 AT3G54950 637 / 0.0 patatin-related phospholipase IIIbeta, PATATIN-LIKE PROTEIN 7, patatin-like protein 6 (.1) Lus10036526 [exp] 127 / 3e-32 AT2G39220 640 / 0.0 PATATIN-like protein 6 (.1) Lus10023512 [exp] 119 / 5e-29 AT4G29800 523 / 0.0 PATATIN-like protein 8 (.1.2) Lus10028347 [exp] 116 / 3e-28 AT2G11520 435 / 3e-149 calmodulin-binding receptor-like cytoplasmic kinase 3 (.1) Lus10038349 [exp] 102 / 1e-23 AT3G54950 354 / 2e-118 patatin-related phospholipase IIIbeta, PATATIN-LIKE PROTEIN 7, patatin-like protein 6 (.1) Lus10022040 [exp] 63 / 8e-11 AT3G63200 413 / 3e-145 PATATIN-like protein 9 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0323 [poplar] [flax] Patatin PF01734 [poplar] [flax] Patatin Patatin-like phospholipase
Representative CDS sequence Show only first row Show all	>Potri.014G033200.1 pacid=42764546 polypeptide=Potri.014G033200.1.p locus=Potri.014G033200 ID=Potri.014G033200.1.v4.1 annot-version=v4.1 ATGCCTTTAAATTACTCCTCAATCTCTCATATCGACACTTTAAGATCACCCCTTCAACCCCCAACTTTTGGAAACCAAATCACTATTCTTAGCATCGATG GAGGTGGAATAAGAGGAATAATACCAGGAACTATCCTTGCCTTTTTAGAGTCCGAGCTTCAGAAGCTGGATGGTGCAGACGCAAGACTTGCAGACTACTT TGATGTGATTTCAGGCACCAGCACTGGTGGCCTCGTGACTGCTATGCTAGCTGCCCCTAATGAGCAAAACCGCCCTTTATTTGCCGCCAAAGACATTAAT GACTTCTACCTTGAGAACTGCCCTAAAATCTTTCACCAGGACGGGTCTCCATTGGCTTCTGCCGGAAAACTGATCAAGAGTTTGAAAGGACCAAAATACG ATGGCAAATTTCTGCATAGCATTGTCAAGGAAAAATTGGGAGATAAACGCCTGCACCAGACCATGACAAACATTGTGATCCCAACTTTTGACATCAAGCG CCTTCAGCCAACAATCTTTTCAAGCTATCAGGTGAAGAACGACCCATCCACGGATGCCCTTTTATCTGATATATGCATCGGGACTTCAGCTGCCCCAACT TACCTCCCTGCCCATTATTTTGAAACCAAGGACCCATCAGGCAAAGTTAGAGAGTTCAATCTGATTGATGGTGGTGTGGCTGCAAATAATCCAACTTTAG TTGCCGTGAGCGAAGTTTCCAAAGAAATTACTCGGAAGAATCCTGACTTCTTCCCCACAGCGCCCATGGATTATGGTCGATTCCTGGTCCTGTCCTTGGG GACTGGTACAGCAAAATGTGAAGAAAAGTATGATGCAGATGAAGCAGCCAAGTGGGGTGTCTTGGGATGGTTGACTAGTGAAAATTCTACTCCGTTAGTG GATGTGTTTACAGAAGCTAGTGGCGACATGATTGATCTTCATATTTCCACTGTTTTCCAAGCCCTGCACTGTGAGGAAAATTATCTTCGAATTCAGGATG ACACGCTGACCGGAACACTTTCGTCCGTGGATGTTGCCACGAAAGAGAATTTGGAGAATCTTGTGAAAGTGGGTGAGAAATTATTGAAAAAACCAGTAGC AAGGGTGGATTTAGGCACTGGAGTCTTTACACCTGTTGATAAGATGACAAATGAAGAGGCTCTCATAAAGATGGCTAAATTACTGTCAAGGGAGAAGCAT CTTCGTAATTCTAGGTCACCAATTGGAAAAGTTGCTACTTCGAAGGGGATATGA
AA sequence Show only first row Show all	>Potri.014G033200.1 pacid=42764546 polypeptide=Potri.014G033200.1.p locus=Potri.014G033200 ID=Potri.014G033200.1.v4.1 annot-version=v4.1 MPLNYSSISHIDTLRSPLQPPTFGNQITILSIDGGGIRGIIPGTILAFLESELQKLDGADARLADYFDVISGTSTGGLVTAMLAAPNEQNRPLFAAKDIN DFYLENCPKIFHQDGSPLASAGKLIKSLKGPKYDGKFLHSIVKEKLGDKRLHQTMTNIVIPTFDIKRLQPTIFSSYQVKNDPSTDALLSDICIGTSAAPT YLPAHYFETKDPSGKVREFNLIDGGVAANNPTLVAVSEVSKEITRKNPDFFPTAPMDYGRFLVLSLGTGTAKCEEKYDADEAAKWGVLGWLTSENSTPLV DVFTEASGDMIDLHISTVFQALHCEENYLRIQDDTLTGTLSSVDVATKENLENLVKVGEKLLKKPVARVDLGTGVFTPVDKMTNEEALIKMAKLLSREKH LRNSRSPIGKVATSKGI

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G26560		PLP2, PLAIIA, P...	PATATIN-LIKE PROTEIN 2, phosph...		Potri.014G033200 [exp]	0	1
AT5G36970		NHL25	NDR1/HIN1-like 25 (.1)		Potri.012G145500 [exp]	1.00	0.9784	NHL25.1
AT2G24720		ATGLR2.2	glutamate receptor 2.2 (.1)		Potri.018G096300 [exp]	1.41	0.9370
					Potri.011G047200 [exp]	2.44	0.9274
					Potri.016G140250 [exp]	3.87	0.9104
					Potri.016G003033 [exp]	6.00	0.9068
AT1G29280	WRKY	ATWRKY65, WRKY6...	WRKY DNA-binding protein 65 (....		Potri.004G060900 [exp]	6.48	0.9047
AT1G13340			Regulator of Vps4 activity in ...		Potri.004G100900 [exp]	7.74	0.8791
AT5G39040		AtALS1, ABCB27,...	ARABIDOPSIS THALIANA TRANSPORT...		Potri.015G059700 [exp]	9.74	0.8698
AT3G14280			unknown protein		Potri.003G072400 [exp]	14.49	0.8765
AT3G26300		CYP71B34	"cytochrome P450, family 71, s...		Potri.007G074900 [exp]	16.24	0.8621

Compare expression of checked genes

Potri.014G033200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.