Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G26560 530 / 0 PLP2, PLAIIA, PLA2A PATATIN-LIKE PROTEIN 2, phospholipase A 2A (.1) AT4G37070 452 / 3e-158 AtPLAIVA, PLP1, PLAIVA ,PLA IVA phospholipase A IVA, Acyl transferase/acyl hydrolase/lysophospholipase superfamily protein (.1.2.3.4) AT4G37050 450 / 3e-157 PLAIII{beta}, AtPLAIVC, PLP4, PLAV ,PLA V patatin-related phospholipase III beta, phospholipase A IVC, PATATIN-like protein 4 (.1) AT4G37060 434 / 3e-151 AtPLAIVB, PLP5, PLAIVB ,PLA IVB phospholipase A IVB, PATATIN-like protein 5 (.1.2) AT5G43590 368 / 3e-125 Acyl transferase/acyl hydrolase/lysophospholipase superfamily protein (.1) AT2G39220 130 / 3e-33 PLP6, PLAIIB ,PLA IIB PATATIN-like protein 6 (.1) AT3G54950 125 / 2e-31 pPLAIIIbeta, PLP7, PLAIIIA ,PLA IIIA patatin-related phospholipase IIIbeta, PATATIN-LIKE PROTEIN 7, patatin-like protein 6 (.1) AT4G29800 116 / 4e-28 PLP8, PLAIVD ,PLA IVD PATATIN-like protein 8 (.1.2) AT3G63200 99 / 9e-23 PLP9, PLAIIIB ,PLA IIIB PATATIN-like protein 9 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G033900 [exp] 788 / 0 AT2G26560 536 / 0.0 PATATIN-LIKE PROTEIN 2, phospholipase A 2A (.1) Potri.014G033600 [exp] 776 / 0 AT2G26560 535 / 0.0 PATATIN-LIKE PROTEIN 2, phospholipase A 2A (.1) Potri.014G033400 [exp] 775 / 0 AT2G26560 530 / 0.0 PATATIN-LIKE PROTEIN 2, phospholipase A 2A (.1) Potri.014G033200 [exp] 769 / 0 AT2G26560 533 / 0.0 PATATIN-LIKE PROTEIN 2, phospholipase A 2A (.1) Potri.014G033000 [exp] 763 / 0 AT2G26560 526 / 0.0 PATATIN-LIKE PROTEIN 2, phospholipase A 2A (.1) Potri.014G033500 [exp] 681 / 0 AT2G26560 495 / 1e-175 PATATIN-LIKE PROTEIN 2, phospholipase A 2A (.1) Potri.017G134200 [exp] 669 / 0 AT2G26560 524 / 0.0 PATATIN-LIKE PROTEIN 2, phospholipase A 2A (.1) Potri.017G134001 [exp] 666 / 0 AT2G26560 525 / 0.0 PATATIN-LIKE PROTEIN 2, phospholipase A 2A (.1) Potri.017G134051 [exp] 666 / 0 AT2G26560 525 / 0.0 PATATIN-LIKE PROTEIN 2, phospholipase A 2A (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10009340 [exp] 450 / 3e-157 AT4G37070 489 / 7e-173 phospholipase A IVA, Acyl transferase/acyl hydrolase/lysophospholipase superfamily protein (.1.2.3.4) Lus10000279 [exp] 447 / 2e-155 AT4G37070 486 / 1e-170 phospholipase A IVA, Acyl transferase/acyl hydrolase/lysophospholipase superfamily protein (.1.2.3.4) Lus10019637 [exp] 447 / 2e-155 AT4G37070 486 / 1e-170 phospholipase A IVA, Acyl transferase/acyl hydrolase/lysophospholipase superfamily protein (.1.2.3.4) Lus10040394 [exp] 129 / 4e-33 AT2G39220 642 / 0.0 PATATIN-like protein 6 (.1) Lus10036526 [exp] 128 / 1e-32 AT2G39220 640 / 0.0 PATATIN-like protein 6 (.1) Lus10041402 [exp] 127 / 2e-32 AT3G54950 637 / 0.0 patatin-related phospholipase IIIbeta, PATATIN-LIKE PROTEIN 7, patatin-like protein 6 (.1) Lus10028347 [exp] 122 / 3e-30 AT2G11520 435 / 3e-149 calmodulin-binding receptor-like cytoplasmic kinase 3 (.1) Lus10023512 [exp] 119 / 6e-29 AT4G29800 523 / 0.0 PATATIN-like protein 8 (.1.2) Lus10038349 [exp] 103 / 9e-24 AT3G54950 354 / 2e-118 patatin-related phospholipase IIIbeta, PATATIN-LIKE PROTEIN 7, patatin-like protein 6 (.1) Lus10022040 [exp] 69 / 1e-12 AT3G63200 413 / 3e-145 PATATIN-like protein 9 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0323 [poplar] [flax] Patatin PF01734 [poplar] [flax] Patatin Patatin-like phospholipase
Representative CDS sequence Show only first row Show all	>Potri.014G034000.1 pacid=42763211 polypeptide=Potri.014G034000.1.p locus=Potri.014G034000 ID=Potri.014G034000.1.v4.1 annot-version=v4.1 ATGCCTTTGAATTCATCCTCAATCTCTCATATCGAGACTTTAAGTTTAAGATCACCCATTCAACCCCCAACTTTTGGAAACCAAATCACTGTTCTTAGCA TCGATGGAGGTGGAATAAGAGGAATCATACCAGGAACTATCCTTGCCTTTTTAGAGTCCGAGCTTCAGAAGCTGGATGGTGCAGACGCAAGACTTGCAGA CTACTTTGATGTGATTTCAGGCACCAGCACTGGTGGCCTCGTGACTGCTATGCTAGCTGCCCCTAATGAGCAAAACCGCCCTTTATTTTCCGCCAAAGAC ATTATTGACTTCTACCTTGAAAACTGCCCTAAAATCTTTCCCCAGGACGGGTCTCCATTCGCCTCTGCCGGAAAACTGATCACGAGTTTGAGAGGACCAA AATACGATGGCAAATTTCTGCATAGCATTGCCAAGGAAAAAATGGGAGATAAACGCCTGCACCAGACCATGACAAACATTGTGATCCCAACTTTTGACAT CAAGCGCCTTCAGCCAACAATCTTTTCAAGCTATCAGGTGAAGAATGACCCATCCATGGATGCCCTTTTATCTGATATATGCATCGGGACTTCAGCTGCC CCAACTTACTTCCCTGCCCATTATTTTGAAACCAAGGGCCCGTCAGGCAAAGTCAGAGAGTTCAATCTGATTGATGGTGGTGTGGCTGCAAATAATCCAA CTTTAGTTGCCGTGAGCGAAGTTTCCAAGGAAATCACTCGGAAGAATCCTGACTTCTTCCCCACAGCGCCTATGGATTATGGTCGATTCCTAGTCCTGTC CTTGGGGACTGGTACAGCAAAATCTGAAGAAAAGTATGATGCAGATGAAGCGGCCAAGTGGGGTATCTTGGGATGGTTGACAAGTGACAATTCTACTCCA TTAGTGGATGTGTTTACAGAAGCTAGTGGCGACATGGTTGATCTTCATGTTTCCACTGTTTTCCAAGCCCTCCACTCTGAGGAAAATTATCTTCGAATTC AGGATGACACGCTGACCGGAACACTTTCGTCCATGGATGTTGCCACGAAAGAGAATTTGGAGAATCTTGTGAAAGTGGGTGAGAAATTGTTGAAAAAACC AGTATCAAGGGTGGATTTAGGCACTGGAATCTTTACACCAACTGATAAGATGACAAATGAAGAGGCTCTCATAAAGATGGCTAAATTACTGTCAAGGGAG AAGCATCTTCGTGATTCTAGGTCACCAGTTGGAAAAGTTGCTACTTCCAAGTGA
AA sequence Show only first row Show all	>Potri.014G034000.1 pacid=42763211 polypeptide=Potri.014G034000.1.p locus=Potri.014G034000 ID=Potri.014G034000.1.v4.1 annot-version=v4.1 MPLNSSSISHIETLSLRSPIQPPTFGNQITVLSIDGGGIRGIIPGTILAFLESELQKLDGADARLADYFDVISGTSTGGLVTAMLAAPNEQNRPLFSAKD IIDFYLENCPKIFPQDGSPFASAGKLITSLRGPKYDGKFLHSIAKEKMGDKRLHQTMTNIVIPTFDIKRLQPTIFSSYQVKNDPSMDALLSDICIGTSAA PTYFPAHYFETKGPSGKVREFNLIDGGVAANNPTLVAVSEVSKEITRKNPDFFPTAPMDYGRFLVLSLGTGTAKSEEKYDADEAAKWGILGWLTSDNSTP LVDVFTEASGDMVDLHVSTVFQALHSEENYLRIQDDTLTGTLSSMDVATKENLENLVKVGEKLLKKPVSRVDLGTGIFTPTDKMTNEEALIKMAKLLSRE KHLRDSRSPVGKVATSK

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G26560		PLP2, PLAIIA, P...	PATATIN-LIKE PROTEIN 2, phosph...		Potri.014G034000 [exp]	0	1
AT4G31550	WRKY	ATWRKY11, WRKY1...	WRKY DNA-binding protein 11 (....		Potri.018G008500 [exp]	1.73	0.9279	Pt-WRKY11.1
					Potri.006G044200 [exp]	2.44	0.9074
AT3G57450			unknown protein		Potri.009G058500 [exp]	2.82	0.9050
					Potri.009G114701 [exp]	4.47	0.9213
AT4G38540			FAD/NAD(P)-binding oxidoreduct...		Potri.019G003400 [exp]	5.19	0.8869
AT3G61850	DOF	DAG1, AtDof3,7	dof affecting germination 1, D...		Potri.002G174300 [exp]	8.66	0.9103
AT2G41180		SIB2	sigma factor binding protein 2...		Potri.013G043800 [exp]	9.16	0.8858
AT1G52140			unknown protein		Potri.001G188900 [exp]	9.16	0.9209
					Potri.012G121044 [exp]	9.79	0.9165
AT3G13540	MYB	ATMYB5, ATM2	myb domain protein 5 (.1)		Potri.013G056400 [exp]	10.39	0.9038

Compare expression of checked genes

Potri.014G034000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.