Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G34310 1292 / 0 alpha/beta-Hydrolases superfamily protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G128201 [exp] 750 / 0 AT4G34310 515 / 8e-174 alpha/beta-Hydrolases superfamily protein (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10042665 [exp] 1068 / 0 AT4G34310 984 / 0.0 alpha/beta-Hydrolases superfamily protein (.1.2) Lus10021747 [exp] 1053 / 0 AT4G34310 953 / 0.0 alpha/beta-Hydrolases superfamily protein (.1.2) Lus10042664 [exp] 189 / 1e-52 AT4G34310 266 / 1e-80 alpha/beta-Hydrolases superfamily protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0028 [poplar] [flax] AB_hydrolase PF07819 [poplar] [flax] PGAP1 PGAP1-like protein
Representative CDS sequence Show only first row Show all	>Potri.014G034100.2 pacid=42762378 polypeptide=Potri.014G034100.2.p locus=Potri.014G034100 ID=Potri.014G034100.2.v4.1 annot-version=v4.1 ATGCTCCGTCACTGTTGCAGAAATCGAAGCTACCTCCGTCTTCCTCTCCCTCGCTCTTTCTCCTCTTGTAAAAACCCTATCGAGCCGCCAAACAATCTCA AGAGTTCCCATTATATCCTTCATAAACCACCAATACTCCACCAGAATCACCTTATTAATTCCACCGCAACCAGCACCGCCTCCTCTCTTTCTCGTAACTC CGTACTCGCTCTCTCCGCCACTCTCGTCTCCGCCGTACTCGCATCCCTCGCTTATAATAATCTCAAGTCCACAAACCCTGATCCTAACGGTAGTAGAGAT TACAATCCTCTGTACGCTGCAATTGAGCAGAAGATTTCGAAGTCAAATGAATCTCTTAGAAGAATCTTTTATCACGCGAGGAAAACAGGCGTTGCCGCGT CTGTTTTATGGCAATCGCTAAGCTCTGTGCTCTCTTCTGCGAATCATGAGGTGAGGGTTGGATTTGAGCTTCGTGTGGCGGCTTTGTTGGCTGATATTGC GGCGGCAAATGCGGCACGCAGGGCGGCTTTGGTTGAGGCTGGTGGTGGTGCGGTGGTGGATTGGTTGTTGGAGACGGTTGCGGTAGGTGGAGACGGGTCT GGTTCCCAGGCTGAGGCGGCTAGGGCCTTAGCGTATTTGATTGCGGATCCTAATGTGTCCGCTGATGTTCTAGGGAGGCCTCATGCTGTGCCTTATTTGT TGCGGTTTATATTTTCGTGCCAGCCGAAGAAGAGCCAATCGAGACGTAGTTCATTCGATATCTCTGATTCCTTGAAAGGTAGGAGCATGCTTGTGGCTGC AATCATGGATATTGTCACATCCAACTGTGAGAGTTTAGAAAAGGTTTCTTTTAAGCCATCCTTGCCAGGAAATGCAGAAATGAGGGACATTGCTGCAGCC ATTGAAGTTGTTGAGGAAGGTGGTTTACAGATGGACAATGGGGGTGAAAATGAAGATGATGACGATGGTGGGAGAGGAATGAAAGGTATTGGAATTAAAA TACTTGAAGGTACAACGGTTTTAGGTCTTTCAAGGACTAGTGGGCTTGTGGATTTGGAGAATTCTGATGCTGGTCATGTTGAATCATTTAGCCATACTCC TAAAACGGTTGCCTTGTTGCATAAGCATGACCGTTTACTAGCAAAAGAAAATCTGTCTTCTGCTGTTGTTCCTGGACTCTGGGATGATCTGCAGTGTCAG CATGTTGCTGTGCCCTTTGCAGCATGGGCATTGGCCAATTGGGCAATGGCATCTGAGATAAATAGATATCATATTCAAGAACTGGATCGAGATGGACAAG CTGTTATGACTGCTTTAATGGCACCTGAGAGATCTGTTAAATGGCATGGGAGCTTGGTGGCCCAGTTGCTGTTGAAGGATCGTAATCTTCCCTTGAATGA TTCTGTTTCTGATTGGAGTTCCAGTCTTCTGGCTACTATTTCACAGGCAAGCAAAAATGATGACATCCCTTTGGTTCAGATGGCTTTGTCTGCTTTTTTG CTTTCTGTTGAGAGAAGTCCAGATGCAAGGAAGATAGTGATGGAGAAAGGTCTTCAGCTTATGAGAGACACAGCTAAGAAGACAACAAAACACAAGCAGG TACAAGAAGCATTAGCAAAGGCATTGGAGTTACTTTCAACCGGTGATGTTCACTTATCTCTTGAAGATAGTCAGAAGTGGTCTGGCATTCTGCTACTTTG GGTTTTTGCAAAAGTTTCCTCCAGTGCTACCCGATCTTCTGCTATAAAAATTCTCTCTTGCATTTTTGAAGAACATGGACCATCTACCCTTCCAATTTCT CAAGGCTGGTTAGCTATTTTGCTAAATGAAGTTTTAGTTTCAAGCAAGGCGTCATTTGAAGGAGGAACTCAACCTAAAGGGGACAAAGTGAAGACTCAAA TTGATCAGTCCAACATTCTTTTTGCTACACAGACTGCTAACCAGTTGGCAGGTGCAGTTGTGAATCTAGCTAGGAATCAGCTAGGAACAGACATTGATTC CTTTGATACTTTACCTCTGGCAGATCTTCTTTCCATGGAACCTTTTATAGGACCACTTAAGAACATAAAGAAAGACGCACCTAAATCTAAGGCAGCAGAT TCTGCTTTGGCAACTCTTAAGGGGATCAAAGCACTGACTGAACTTTGTGCCAAGGATTCTTTATGTCAAGAAAAAATATCTGAATTCGGTGTTTTGTGTT TGGTTAGGCGCTTTCTGTTGAGTGATGATTATGAGAAGCTTGCTGCAATGGAAGCTTATGATGCTTCTAGGGCCCCTGAGTCACAAGAACGGGGTGCGAA TACTGCTGGCGAGTCATCTAATGCAAATGGTAATGATCCTTCTAGTGTTCGAGTTCCACCTACAGCTCACATTCGAAAGCATGCAGCTAGACTCTTGAAT ATTATTTCACTACTTCCAAAAGTCCAAAAGGTTATCCTAGCAGACAAGGCTTGGTATGAATGGCTTGAAGATTGTGCTAATGGGAGGATTGCAGGTTGTA GTAACCTTAAGATACGAAGTTATGCTAGGGCAACACTCTTAAATGTGTTGTGCAACCAGTATACTGGTAGCGAATCAACTAATAGCAATGCTAGTGAGAC TGAAGCTGGAAATGGAAGAGGTGATTGTGCTCGTTATGGCGATATGATATTTTTGATTAATCCAGATTTGCCACACTGGAAGTATTGTGAAAAAATAGAT AGCATGACGATTCAAAAAAATAAGTCGTCTTCAATTGAGGATTCTATCGCCAGCGATGGTTCAACTGGAACCAGTGCTTCAGATGCTCATAATAGGTCAT ATGATTGCAATGATTCGCCGAAGGACTCTGATTCAAATGTTCCAGAGATAGATGTTGTCTTTGTCCATGGTTTGCGTGGTGGGCCTTATAAAACTTGGCG AATATCTGAGGACAAACTTTCATCGAAGTCTGGCTTGGTTGAGAAGATTGATGAGGAAGCGGGGAAGTTAGGGACATTTTGGCCTGGTGAATGGCTTTCA GCGGACTTTCCTCAAGCTCGTCTTTTTACCCTCAAATACAAGACAAATCTCACTCAATGGTCCGGAGCTAGCCTGCCTCTTCAGGAAGTCAGCTCCAAGC TGTTAGAGCAGCTTTTGGATGCTGGCATTGGAAATCGTCCTGTTGTATTTGTGACTCACAGCATGGGAGGCCTGCTCGTCAAACAGATGCTGCATAGAGC CAAGTCAGAAAATATTCATAATCTTGTGAACAACACTGCTGGACTTGTGTTTTACAGCTGTCCCCATTTTGGCAGCAAACTGGCAGACATGCCTTGGAGA ATGGGGCTTGTGCTTCGTCCTGCTCCAACTATAGGGGAGCTAAGAAGTGGTTCTCCAAGACTTGTAGAACTTAATGATTTTATCCGCCAGCTTCATAAGA AAGGACTGGTTGAAGTCGTCAGTTTCTGTGAGACCAAGGTAACTCCCATTGTTGAAGGATATGGGGGATGGGCCTGGAGGATGGAAATTGTGCCTATCGA ATCAGCTTACCCTGGATTTGGTGAACTTGTTGTTCTAGACTCGACCGATCATATAAATTCATGCAAGCCAGTGTGCCGCACTGATCCTTCGTATATCGAG ACATTAAATTTTTTACAGAAGATGAAAGCCCATTATTCAGGAAGAGATGTTTCACCGTGA
AA sequence Show only first row Show all	>Potri.014G034100.2 pacid=42762378 polypeptide=Potri.014G034100.2.p locus=Potri.014G034100 ID=Potri.014G034100.2.v4.1 annot-version=v4.1 MLRHCCRNRSYLRLPLPRSFSSCKNPIEPPNNLKSSHYILHKPPILHQNHLINSTATSTASSLSRNSVLALSATLVSAVLASLAYNNLKSTNPDPNGSRD YNPLYAAIEQKISKSNESLRRIFYHARKTGVAASVLWQSLSSVLSSANHEVRVGFELRVAALLADIAAANAARRAALVEAGGGAVVDWLLETVAVGGDGS GSQAEAARALAYLIADPNVSADVLGRPHAVPYLLRFIFSCQPKKSQSRRSSFDISDSLKGRSMLVAAIMDIVTSNCESLEKVSFKPSLPGNAEMRDIAAA IEVVEEGGLQMDNGGENEDDDDGGRGMKGIGIKILEGTTVLGLSRTSGLVDLENSDAGHVESFSHTPKTVALLHKHDRLLAKENLSSAVVPGLWDDLQCQ HVAVPFAAWALANWAMASEINRYHIQELDRDGQAVMTALMAPERSVKWHGSLVAQLLLKDRNLPLNDSVSDWSSSLLATISQASKNDDIPLVQMALSAFL LSVERSPDARKIVMEKGLQLMRDTAKKTTKHKQVQEALAKALELLSTGDVHLSLEDSQKWSGILLLWVFAKVSSSATRSSAIKILSCIFEEHGPSTLPIS QGWLAILLNEVLVSSKASFEGGTQPKGDKVKTQIDQSNILFATQTANQLAGAVVNLARNQLGTDIDSFDTLPLADLLSMEPFIGPLKNIKKDAPKSKAAD SALATLKGIKALTELCAKDSLCQEKISEFGVLCLVRRFLLSDDYEKLAAMEAYDASRAPESQERGANTAGESSNANGNDPSSVRVPPTAHIRKHAARLLN IISLLPKVQKVILADKAWYEWLEDCANGRIAGCSNLKIRSYARATLLNVLCNQYTGSESTNSNASETEAGNGRGDCARYGDMIFLINPDLPHWKYCEKID SMTIQKNKSSSIEDSIASDGSTGTSASDAHNRSYDCNDSPKDSDSNVPEIDVVFVHGLRGGPYKTWRISEDKLSSKSGLVEKIDEEAGKLGTFWPGEWLS ADFPQARLFTLKYKTNLTQWSGASLPLQEVSSKLLEQLLDAGIGNRPVVFVTHSMGGLLVKQMLHRAKSENIHNLVNNTAGLVFYSCPHFGSKLADMPWR MGLVLRPAPTIGELRSGSPRLVELNDFIRQLHKKGLVEVVSFCETKVTPIVEGYGGWAWRMEIVPIESAYPGFGELVVLDSTDHINSCKPVCRTDPSYIE TLNFLQKMKAHYSGRDVSP

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G34310			alpha/beta-Hydrolases superfam...		Potri.014G034100 [exp]	0	1
AT5G22750		RAD5A, RAD5	DNA/RNA helicase protein (.1)		Potri.004G189400 [exp]	1.00	0.9271
AT3G43240	ARID		ARID/BRIGHT DNA-binding domain...		Potri.018G064500 [exp]	2.64	0.8440
AT5G23150		HUA2	ENHANCER OF AG-4 2, Tudor/PWWP...		Potri.007G071600 [exp]	4.24	0.8930
					Potri.010G163501 [exp]	7.34	0.8346
AT2G24640		UBP19	ubiquitin-specific protease 19...		Potri.006G270600 [exp]	9.00	0.7577
AT5G51300			splicing factor-related (.1.2....		Potri.003G107200 [exp]	9.48	0.8343
AT3G54460			SNF2 domain-containing protein...		Potri.003G197701 [exp]	9.48	0.7947
AT3G08020			PHD finger family protein (.1)		Potri.009G059500 [exp]	10.72	0.8498
AT5G53770			Nucleotidyltransferase family ...		Potri.001G400800 [exp]	11.66	0.8421
AT1G04210			Leucine-rich repeat protein ki...		Potri.008G158600 [exp]	11.83	0.8552

Compare expression of checked genes

Potri.014G034100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.