Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G26550 305 / 3e-103 HO2 heme oxygenase 2 (.1.2.3) AT2G26670 233 / 3e-75 GUN2, ATHO1, TED4, HY6, HY1 REVERSAL OF THE DET PHENOTYPE 4, HEME OXYGENASE 6, GENOMES UNCOUPLED 2, ARABIDOPSIS THALIANA HEME OXYGENASE 1, Plant haem oxygenase (decyclizing) family protein (.1), Plant haem oxygenase (decyclizing) family protein (.2) AT1G69720 228 / 4e-73 HO3 heme oxygenase 3 (.1.2) AT1G58300 203 / 8e-64 HO4 heme oxygenase 4 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G069700 [exp] 227 / 6e-73 AT2G26670 363 / 3e-127 REVERSAL OF THE DET PHENOTYPE 4, HEME OXYGENASE 6, GENOMES UNCOUPLED 2, ARABIDOPSIS THALIANA HEME OXYGENASE 1, Plant haem oxygenase (decyclizing) family protein (.1), Plant haem oxygenase (decyclizing) family protein (.2) Potri.018G131700 [exp] 226 / 1e-72 AT2G26670 364 / 2e-127 REVERSAL OF THE DET PHENOTYPE 4, HEME OXYGENASE 6, GENOMES UNCOUPLED 2, ARABIDOPSIS THALIANA HEME OXYGENASE 1, Plant haem oxygenase (decyclizing) family protein (.1), Plant haem oxygenase (decyclizing) family protein (.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10021748 [exp] 296 / 3e-99 AT2G26550 288 / 2e-96 heme oxygenase 2 (.1.2.3) Lus10042666 [exp] 270 / 3e-89 AT2G26550 263 / 1e-86 heme oxygenase 2 (.1.2.3) Lus10030092 [exp] 236 / 2e-76 AT2G26670 407 / 1e-144 REVERSAL OF THE DET PHENOTYPE 4, HEME OXYGENASE 6, GENOMES UNCOUPLED 2, ARABIDOPSIS THALIANA HEME OXYGENASE 1, Plant haem oxygenase (decyclizing) family protein (.1), Plant haem oxygenase (decyclizing) family protein (.2) Lus10005718 [exp] 188 / 4e-58 AT2G26670 354 / 7e-124 REVERSAL OF THE DET PHENOTYPE 4, HEME OXYGENASE 6, GENOMES UNCOUPLED 2, ARABIDOPSIS THALIANA HEME OXYGENASE 1, Plant haem oxygenase (decyclizing) family protein (.1), Plant haem oxygenase (decyclizing) family protein (.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0230 [poplar] [flax] HO PF01126 [poplar] [flax] Heme_oxygenase Heme oxygenase
Representative CDS sequence Show only first row Show all	>Potri.014G034200.2 pacid=42764473 polypeptide=Potri.014G034200.2.p locus=Potri.014G034200 ID=Potri.014G034200.2.v4.1 annot-version=v4.1 ATGGCCTTGTTATCCTTGACAGCGTCGTGTAAACCACCATCAATGGAGCCTCTTGTCCATTCTTCTTCTTTTATTTCATTACTATTTCCATCTCAGTTAA AGTTCCCAAACCCAATAAAAAACAAGAACCACAAGATAATAACGTGTTGCTCCAATTCAAATTCTTCTTTACCAACAACAGCAACACCAAGTGTGGGCCC GCCCGTGATGAAGAAGAGAAAAAGGTATAGGAAGCCATATCCAGGAGAGAACAAAGGGATTACTGAAGAGATGAGATTTGTTGCCATGAAGCTCCGTAAT ATCAAAGGCAAACACACCCACAAGACTGTTAAGAGTGATGATGATGATGATGACAGCTGCCAAGATTCAGAAAACGATAGCGTATCTGAGAAAGAAGAAG AGGGAAATGGTGATGGTGATGGTGATGGTGATGGTGATGGTGATGGTGATGGTGATATTTGGATTCCCGGTATGGAAGGGTTTGTTAAGTATCTAGTTGA CAGCAAGCTTGTTTTCGACACTCTTGAGCGGATTGTTGATAAATCTGAAGATGTTTCTTATACCTATTTTAGAAAAACTGGGTTGGAAAGATCGGAGGGT CTTGCAAAGGACCTCGAGTGGTTTAGTCAACGGAATATAGAGATTCCTGAGCCTAGTACTCCAGGAACTTCTTATGTCAAGTATTTGGAGGAGCTTGCAG AGGATAATGCCCCACTGTTCCTTTCCCATTTCTACAACATATATTTCTCACATATTGCAGGCGGTCAGGTGATATCTAGAAAGGTTTCTGACAAGATACT GCAAGGAAGAGAGCTGGAGTTCTACAGATGGGATGGAGATGCCCAGGAATTGTTGAAGGGTGTGCGTGAGAAGCTCAACATGCTTGGAGAGCACTGGACA CGAGACGAGAAAAATAAATGCTTAAAGGAAGCGGCAAAGTCATTCAGATATTTGGGGCAGATAGTCCGGCTGATCATCTTGTAA
AA sequence Show only first row Show all	>Potri.014G034200.2 pacid=42764473 polypeptide=Potri.014G034200.2.p locus=Potri.014G034200 ID=Potri.014G034200.2.v4.1 annot-version=v4.1 MALLSLTASCKPPSMEPLVHSSSFISLLFPSQLKFPNPIKNKNHKIITCCSNSNSSLPTTATPSVGPPVMKKRKRYRKPYPGENKGITEEMRFVAMKLRN IKGKHTHKTVKSDDDDDDSCQDSENDSVSEKEEEGNGDGDGDGDGDGDGDGDIWIPGMEGFVKYLVDSKLVFDTLERIVDKSEDVSYTYFRKTGLERSEG LAKDLEWFSQRNIEIPEPSTPGTSYVKYLEELAEDNAPLFLSHFYNIYFSHIAGGQVISRKVSDKILQGRELEFYRWDGDAQELLKGVREKLNMLGEHWT RDEKNKCLKEAAKSFRYLGQIVRLIIL

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G26550		HO2	heme oxygenase 2 (.1.2.3)		Potri.014G034200 [exp]	0	1
AT3G22690			unknown protein		Potri.006G245300 [exp]	1.00	0.9680
AT5G08305			Pentatricopeptide repeat (PPR)...		Potri.007G073100 [exp]	2.82	0.9394
AT2G39830		LRD3, DAR2	LATERAL ROOT DEVELOPMENT 3, DA...		Potri.009G111446 [exp]	3.46	0.9589
AT4G24700			unknown protein		Potri.012G086000 [exp]	5.29	0.9571
AT1G32583			unknown protein		Potri.010G246900 [exp]	9.00	0.9174
					Potri.008G136566 [exp]	9.89	0.9316
AT1G20340		PETE2, DRT112	PLASTOCYANIN 2, DNA-DAMAGE-REP...		Potri.005G246100 [exp]	9.89	0.9401	Pt-PETE.1
					Potri.005G026425 [exp]	10.67	0.9421
AT5G63100			S-adenosyl-L-methionine-depend...		Potri.015G082432 [exp]	10.95	0.9373
AT2G46150			Late embryogenesis abundant (L...		Potri.014G090900 [exp]	11.18	0.9187

Compare expression of checked genes

Potri.014G034200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.