Plant FIBer expression Database

Potri.014G034400 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT4G23000 1602 / 0 Calcineurin-like metallo-phosphoesterase superfamily protein (.1)
AT4G11800 1601 / 0 Calcineurin-like metallo-phosphoesterase superfamily protein (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10021750
[exp]
1520 / 0 AT4G11800 1487 / 0.0 Calcineurin-like metallo-phosphoesterase superfamily protein (.1)
Lus10042668
[exp]
934 / 0 AT4G11800 918 / 0.0 Calcineurin-like metallo-phosphoesterase superfamily protein (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0163 Calcineurin PF00149 Metallophos Calcineurin-like phosphoesterase
Representative CDS sequence
>Potri.014G034400.7 pacid=42762897 polypeptide=Potri.014G034400.7.p locus=Potri.014G034400 ID=Potri.014G034400.7.v4.1 annot-version=v4.1
ATGGGCTCGGATAAGCAGACCACTGGTTTATTAGAAACCCTTAGAATGGAGAGGGTGAGGACTATTTTGACGCATACATATCCTTACCCGCACGAGCATT
CGCGGCACGCAATCATTGCTGTTGTTGTGGGTTGTTTGTTTTTCATTTCTTCGGACAACATGCACACTCTCATAGAAAAATTGGACAATAATATTAAGTG
GTGGTCTATGTATGCTTGCCTCCTTGGTTTCTTCTATTTCTTCTCGTCGCCATTTTTGGGGAAGACAATCAAACCTAGCTATTCAAATTTCAGTCGGTGG
TATATAGCTTGGATTTTAGTTGCAACTCTGTATCATCTTCCTAGTTTTCAGTCGATGGGAGTAGATATGAGGATGAATTTGTCATTGTTTTTGACAATAT
CTGTATCTTCAATTTTGTTTCTCCTTGTCTTCCACATTATTTTTATTGGCCTGTGGTATATTGGTCTCGTTTCTCGTGTTGCCGGAAGGAGGCCAGCGAT
CTTGACTATTCTCCAAAACTGCGCAGTTCTCAGTGTAGCCTGCTGTGTGTTTTATAGCCACTGTGGTAACCTTGCCAATTTGAGAGATAGACGATCTCAA
AGAAAGTATTCTAGTTGGTTTTCTTTTTGGAAGAAAGAAGAGAGAAGCACATGGCTTGCAAAATTCCTCCGAATGAATGAGTTAAAAGACCAGGTCTGCT
CTTCTTGGTTTGCTCCAGTTGGGTCTGCTAGTGATTATCCACTTCTGTCCAAGTGGGTTATTTATGGGGAATTAGGTTGCAATGGAAGTGGATGCGCTGG
TTCATCTGATGAAATTTCTCCCTTATATTCACTGTGGGCTACATTCATAGGTCTTTACATTGCCAATTATGTAGTTGAAAGGTCAACAGGGTGGGCTCTT
ACTCACCCCTTGTCAGTGGAAGAGTATGAGAAGTCAAAGAAGAAACAAATGAAGCCTGATTTTTTGGACATGGTCCCTTGGTACTCTGGAACATCTGCAG
ATCTGTTCAAGACAGCCTTTGACCTCTTGGTATCGGTAACTGTGTTTGTTGGCCGTTTTGACATGCGTATGATGCAGGCAGCTATGAACCGGGCTCAAGA
TGGAGCACAGCAGGGTCTTTTGTATGATCATTTTAATGATAAGGATGAATTATGGTTTGACTTCATGGCTGATACTGGTGATGGTGGGAACTCATCTTAT
ACAGTTGCGAGACTTCTTGCTCAGCCTTCTATTCAGGTCACTAGAGGTGATTCTGTGCTTTCCCTACCGCGTGGAAACTTACTTCTTATAGGAGGGGATC
TTGCATATCCTAATCCGTCCTCCTTCACATATGAGAGACGCTTGTTTTGTCCTTTTGAATATGCTTTGCAGCCTCCGCCTTGGTATAAACAAGATCATAT
AGCTGTAAACAAGCCCGAGCTGCCTGATGGAGTGGCTGAATTGAAACAATATGATGGACCTCAGTGCTTTCTCATTCCTGGAAACCATGACTGGTTTGAT
GGACTTCATACTTTCATGAGGTACATATGTCACAAGAGCTGGTTGGGTGGGTGGTTTATGCCCCAGAAGAAGAGTTATTTTGCTCTGCAACTCCCTAAAC
GTTGGTGGGTGTTTGGTCTTGATCTAGCACTCCACAATGATATTGATGTGTACCAGTTCAAATTCTTTGCAGAACTGATACAGGAGAAGGTTGCAGACAA
TGACTCTGTGATCCTTATTACACACGAACCAAATTGGCTTCTTGATTGGTATTGGAATGATGTTTCTGGAAAGAATGTCTCACACTTGATATGTGATTAT
TTGAAAGGAAGGTGTAAAATTCGAGTGGCTGGGGACTTGCATCATTATATGCGCCATTCATTTGTTCCAGCTGATGGGCCAGTCCATGTGCAACATCTTC
TTGTAAATGGTTGTGGTGGTGCCTTTTTACATCCCACCCATGTCTTTTCCAATTTCAAAAAATTGTATGGAACTTCATATGAAAACAAGGCTGCATATCC
TTCATTGGAAGATTCAAGCAGGATTGCTTTGGGTAATATTTTGAAGTTTCGAAAGAAGAACTGGCAATTTGATATCATTGGTGGCTTTATATACTTTGTG
TTGAGTTTTTCTATGTTTCCACAGTGTAAGCTCGACCACATTTTGCAAGACAATACATTTTCCGGCCACTTGTGGAGTTTCTTTGGCACCGTGTGGAATG
TTTTTATGCACGTGCTGGAACACTCTTATGTATCCATGACTGGTGCTATTCTGTTGCTAATTTTGGCGATTGCATTTGTCCCACCCAAAGTTTCTCGAAA
GAAACGGGCAGTTATTGGAATTCTCCATGTTTCTTCCCACCTGGCAGCGGCTCTAATTCTAATGTTGCTTTTGGAACTGGGCATTGAGACATGTATCAGG
CATAAACTGCTAGCAACTTCAGGCTATCACACTTTATATGAATGGTACCGATATGTGGAGAGTGAACACTTTCCAGATCCTACTGGCCTCCGTTCTCGTA
TTGAACAATGGACCTTTGGCCTTTATCCAGCATGCATCAAGTATCTCATGTCTGCCTTCGATGTTCCTGAGGTCATGGCTGTCTCGCGGAGTAATATTTG
CAAAAATGGGATGGAGTCCCTGTCAAGAGGGGGAGCTATCATTTATTATGCTTCCGTGTTTATCTACTTCTGGGTCTTCTCAACACCTGTTGTTTCTTTG
GTTTTTGGAAGTTATCTATACATCTGCATTAACTGGCTTCACATGCACTTTGATGAAGCCTTTTCATCTCTCCGAATTGCAAACTACAAGGCATTCACAC
GATTCCACATCAACAAAGATGGTGATCTTGAGGTTTTCACCCTTGCAGTTGACAAGGTCCCAAAGGAATGGAAACTGGATCCTCATTGGGATGCAGAGCC
AAAGCAGCCACAACAACTGAGCCACCATCGAAAGTTCCCTAGCAAATGGAGTGCAGCTGTTGCTCAGCAAGAGCCACTGAATACTGTTAAAATCGTTGAC
CACTTTGTTGTTAGACAAACAGAGAAACCAGACTTTGGAACTAGTAGCGGATCAGTAATTCATTGA
AA sequence
>Potri.014G034400.7 pacid=42762897 polypeptide=Potri.014G034400.7.p locus=Potri.014G034400 ID=Potri.014G034400.7.v4.1 annot-version=v4.1
MGSDKQTTGLLETLRMERVRTILTHTYPYPHEHSRHAIIAVVVGCLFFISSDNMHTLIEKLDNNIKWWSMYACLLGFFYFFSSPFLGKTIKPSYSNFSRW
YIAWILVATLYHLPSFQSMGVDMRMNLSLFLTISVSSILFLLVFHIIFIGLWYIGLVSRVAGRRPAILTILQNCAVLSVACCVFYSHCGNLANLRDRRSQ
RKYSSWFSFWKKEERSTWLAKFLRMNELKDQVCSSWFAPVGSASDYPLLSKWVIYGELGCNGSGCAGSSDEISPLYSLWATFIGLYIANYVVERSTGWAL
THPLSVEEYEKSKKKQMKPDFLDMVPWYSGTSADLFKTAFDLLVSVTVFVGRFDMRMMQAAMNRAQDGAQQGLLYDHFNDKDELWFDFMADTGDGGNSSY
TVARLLAQPSIQVTRGDSVLSLPRGNLLLIGGDLAYPNPSSFTYERRLFCPFEYALQPPPWYKQDHIAVNKPELPDGVAELKQYDGPQCFLIPGNHDWFD
GLHTFMRYICHKSWLGGWFMPQKKSYFALQLPKRWWVFGLDLALHNDIDVYQFKFFAELIQEKVADNDSVILITHEPNWLLDWYWNDVSGKNVSHLICDY
LKGRCKIRVAGDLHHYMRHSFVPADGPVHVQHLLVNGCGGAFLHPTHVFSNFKKLYGTSYENKAAYPSLEDSSRIALGNILKFRKKNWQFDIIGGFIYFV
LSFSMFPQCKLDHILQDNTFSGHLWSFFGTVWNVFMHVLEHSYVSMTGAILLLILAIAFVPPKVSRKKRAVIGILHVSSHLAAALILMLLLELGIETCIR
HKLLATSGYHTLYEWYRYVESEHFPDPTGLRSRIEQWTFGLYPACIKYLMSAFDVPEVMAVSRSNICKNGMESLSRGGAIIYYASVFIYFWVFSTPVVSL
VFGSYLYICINWLHMHFDEAFSSLRIANYKAFTRFHINKDGDLEVFTLAVDKVPKEWKLDPHWDAEPKQPQQLSHHRKFPSKWSAAVAQQEPLNTVKIVD
HFVVRQTEKPDFGTSSGSVIH

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT4G23000 Calcineurin-like metallo-phosp... Potri.014G034400
[exp]
0 1
AT3G03140 Tudor/PWWP/MBT superfamily pro... Potri.013G081400
[exp]
2.44 0.8297
AT1G50030 TOR target of rapamycin (.1.2) Potri.004G147800
[exp]
8.12 0.8353
AT2G22300 CAMTA SR1, CAMTA3 CALMODULIN-BINDING TRANSCRIPTI... Potri.007G093400
[exp]
9.16 0.8082
Potri.002G124250
[exp]
9.79 0.8088
AT3G54350 FHA EMB1967 embryo defective 1967, Forkhea... Potri.005G234300
[exp]
11.13 0.8121
AT1G09730 Cysteine proteinases superfami... Potri.017G044000
[exp]
13.74 0.8248
Potri.010G104000
[exp]
15.90 0.7762
AT5G05160 REDUCED IN LATE... REDUCED IN LATERAL GROWTH1, Le... Potri.001G209700
[exp]
16.91 0.7945
AT3G09560 ATPAH1 PHOSPHATIDIC ACID PHOSPHOHYDRO... Potri.016G081000
[exp]
18.00 0.7646
AT2G37340 RSZ33, ATRSZ33,... arginine/serine-rich zinc knuc... Potri.006G205800
[exp]
18.00 0.7938

Potri.014G034400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.