Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G26540 335 / 2e-115 ATUROS, ATDUF3, HEMD ARABIDOPSIS THALIANA UROPORPHYRINOGEN III SYNTHASE, DOMAIN OF UNKNOWN FUNCTION 724 3, uroporphyrinogen-III synthase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10021755 [exp] 362 / 2e-126 AT2G26540 333 / 1e-114 ARABIDOPSIS THALIANA UROPORPHYRINOGEN III SYNTHASE, DOMAIN OF UNKNOWN FUNCTION 724 3, uroporphyrinogen-III synthase family protein (.1) Lus10032769 [exp] 347 / 7e-120 AT2G26540 330 / 6e-113 ARABIDOPSIS THALIANA UROPORPHYRINOGEN III SYNTHASE, DOMAIN OF UNKNOWN FUNCTION 724 3, uroporphyrinogen-III synthase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF02602 [poplar] [flax] HEM4 Uroporphyrinogen-III synthase HemD
Representative CDS sequence Show only first row Show all	>Potri.014G034700.2 pacid=42762702 polypeptide=Potri.014G034700.2.p locus=Potri.014G034700 ID=Potri.014G034700.2.v4.1 annot-version=v4.1 ATGGCACCACCAGTCTCTCCCTTCTCCCTCGCTCCTTCACTTTCTTCTTCTTCTTCGTGCCTGCAACTTCACCGGCGATTTTTCTCTCCGTCTCTTAGAA CCTCAGCTTCTGCATCTTCTACTTCGAATTCAGCGCCCAAAGTCGTAGTCACTAGAGAAGGAGGCAAAAACGGCAAGCTCATTAAAGCTCTGGCGAAATA TGGGATAAGTTGTTTGGAGCTTCCACTGATTCAGCATACACAGGGACCTGATTCAGATAAACTATCTTCTGTGTTATGCGATAGTGCGTTTGACTGGATC ATTGTAACTTCCCCTGAAGCAGGCTCTGTCTTTCTGGAGGCATGGAAGGTAGCTGGAACCCCAAAAGTTAAGCTAGGGGTTGTAGGAGCTGGCACAGCAA GCATTTTTGAGGAAGTAATGCAATCATCAGAGAGATCACTTGATGTTGCCTTTACACCATCAAAAGCAACTGGTAAGGTTTTGGCATCAGAGCTTCCAAG GAATGGAAACAAAAGATGCACTGTATTGTACCCAGCTTCTGCAAAAGCAAGCAATGAGATCGAACAAGGTCTGTATAATCGTGGATTTGAGGTTGTCAGA CTAAATACATACACAACTGTGCCTGTTGGTCATGTTGATGAAATGGTTCTGAAGCAGGCAATTTCAGCCCCCGTTGTTGCAGTTGCTTCACCTTCTTCAG TTCGAGCCTGGGCCAATCTTATTCCAGAATCAGAGGAATGGAACAATTCAGTGGCCTGTATTGGGGAGACAACTGGATCAGCAGCAAAAAGATTAGGCTT TAAAAAAGTGTACTTTCCAAGACAACCTGGTCTTGAAGGGTGGGTAGATAGCATCCTTGAGGCCTTAAGAGCACACAACGATTCCTAG
AA sequence Show only first row Show all	>Potri.014G034700.2 pacid=42762702 polypeptide=Potri.014G034700.2.p locus=Potri.014G034700 ID=Potri.014G034700.2.v4.1 annot-version=v4.1 MAPPVSPFSLAPSLSSSSSCLQLHRRFFSPSLRTSASASSTSNSAPKVVVTREGGKNGKLIKALAKYGISCLELPLIQHTQGPDSDKLSSVLCDSAFDWI IVTSPEAGSVFLEAWKVAGTPKVKLGVVGAGTASIFEEVMQSSERSLDVAFTPSKATGKVLASELPRNGNKRCTVLYPASAKASNEIEQGLYNRGFEVVR LNTYTTVPVGHVDEMVLKQAISAPVVAVASPSSVRAWANLIPESEEWNNSVACIGETTGSAAKRLGFKKVYFPRQPGLEGWVDSILEALRAHNDS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G26540		ATUROS, ATDUF3,...	ARABIDOPSIS THALIANA UROPORPHY...		Potri.014G034700 [exp]	0	1
AT5G37710			alpha/beta-Hydrolases superfam...		Potri.017G130000 [exp]	5.74	0.8071
AT1G49960			Xanthine/uracil permease famil...		Potri.001G292600 [exp]	7.74	0.8527
					Potri.008G124350 [exp]	10.24	0.7611
AT3G28610			P-loop containing nucleoside t...		Potri.012G072300 [exp]	12.24	0.8128
AT3G19720		DRP5B, ARC5	Dynamin related protein 5B, AC...		Potri.018G027001 [exp]	14.89	0.8437
AT1G47550		SEC3A	exocyst complex component sec3...		Potri.014G039100 [exp]	17.20	0.8154
AT5G16110			unknown protein		Potri.004G099800 [exp]	21.42	0.6934
AT5G66360		DIM1B	adenosine dimethyl transferase...		Potri.006G264101 [exp]	24.33	0.7959
AT3G19184	B3		AP2/B3-like transcriptional fa...		Potri.007G042500 [exp]	25.92	0.7061
AT1G56260		MDO1	MERISTEM DISORGANIZATION 1, un...		Potri.005G021800 [exp]	28.72	0.7249

Compare expression of checked genes

Potri.014G034700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.