Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G06430 251 / 8e-86 Thioredoxin superfamily protein (.1) AT4G37200 54 / 8e-09 HCF164 HIGH CHLOROPHYLL FLUORESCENCE 164, Thioredoxin superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G034400 [exp] 55 / 4e-09 AT4G37200 305 / 5e-105 HIGH CHLOROPHYLL FLUORESCENCE 164, Thioredoxin superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10021764 [exp] 248 / 1e-84 AT5G06430 255 / 2e-87 Thioredoxin superfamily protein (.1) Lus10032763 [exp] 149 / 4e-46 AT5G06430 152 / 1e-47 Thioredoxin superfamily protein (.1) Lus10016780 [exp] 56 / 3e-09 AT4G37200 300 / 4e-103 HIGH CHLOROPHYLL FLUORESCENCE 164, Thioredoxin superfamily protein (.1) Lus10022477 [exp] 56 / 3e-09 AT4G37200 298 / 2e-102 HIGH CHLOROPHYLL FLUORESCENCE 164, Thioredoxin superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0172 [poplar] [flax] Thioredoxin PF00085 [poplar] [flax] Thioredoxin Thioredoxin
Representative CDS sequence Show only first row Show all	>Potri.014G035300.1 pacid=42763973 polypeptide=Potri.014G035300.1.p locus=Potri.014G035300 ID=Potri.014G035300.1.v4.1 annot-version=v4.1 ATGGATCCTGTTACTAAAAAACCTTTGTTTTGTCTGAAATGGCCGTGGGATGTTGATCGACATGCGAAAAATGGGAAAGTCTGCACCTTTGAAAGTCCTT GGCTTTTCAGGTCCTTGCAGAGTCTGGGATCCGTTGCGCTTAATTCGTTGAACTCGATTTCAGAATCCTCTAATTCTTGGATCAATAATTTTAATCCTAT CAATCTGGGTGCGAGAACTGGCCAAGATAACTTTTTGAAGAATAAAAAAAGGGTCTTGACTCCTGAAGAGCAAGGAGAAGCAGAGCAAAGAGCATTTGCC TCGGCACTGGCAAGTGGTAAAGAGGCTACGGTGCTTGAGTTTTATTCGCCTAGATGCAGGTTGTGCAACTCTTTGCTTAATTTTGTCCTGGAGGTAGAGG GTAGAAACTCAAGTTGGCTCAATGTTGTAATGGCAGATGCAGAGAACGAGAAATGGCTGCCTGAGCTACTTCATTATGACATAAAATACGTTCCTTGCTT TGTTCTGCTGGACCAAAATGGGAGGGCACTGGCAAAGACAGGAATTCCAAGCAGTCGACTACATGTAGTTGCTGGCCTCTCTCATCTTCTCAAAATAAAA CGGGCACAGAATAATAGTGGTTGA
AA sequence Show only first row Show all	>Potri.014G035300.1 pacid=42763973 polypeptide=Potri.014G035300.1.p locus=Potri.014G035300 ID=Potri.014G035300.1.v4.1 annot-version=v4.1 MDPVTKKPLFCLKWPWDVDRHAKNGKVCTFESPWLFRSLQSLGSVALNSLNSISESSNSWINNFNPINLGARTGQDNFLKNKKRVLTPEEQGEAEQRAFA SALASGKEATVLEFYSPRCRLCNSLLNFVLEVEGRNSSWLNVVMADAENEKWLPELLHYDIKYVPCFVLLDQNGRALAKTGIPSSRLHVVAGLSHLLKIK RAQNNSG

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G06430			Thioredoxin superfamily protei...		Potri.014G035300 [exp]	0	1
AT5G63140		ATPAP29, PAP29	purple acid phosphatase 29 (.1...		Potri.002G183000 [exp]	7.61	0.7885
AT3G46870			Pentatricopeptide repeat (PPR)...		Potri.009G038200 [exp]	19.44	0.7871
AT5G22660			FBD, F-box, Skp2-like and Leuc...		Potri.001G337200 [exp]	34.40	0.7842
AT4G34540			NmrA-like negative transcripti...		Potri.009G118000 [exp]	34.98	0.7804	PCBERp6
AT3G60210			GroES-like family protein (.1)		Potri.002G135700 [exp]	36.74	0.7412
AT4G22150		PUX3	plant UBX domain-containing pr...		Potri.004G004200 [exp]	43.95	0.7263
					Potri.003G018400 [exp]	44.58	0.7625
AT2G34470		PSKF109, UREG	urease accessory protein G (.1...		Potri.002G243700 [exp]	44.81	0.7721	Pt-EU3.1
AT4G38250			Transmembrane amino acid trans...		Potri.009G167900 [exp]	52.49	0.7528	PtrANT3
AT3G30841			Cofactor-independent phosphogl...		Potri.017G109500 [exp]	56.78	0.7529

Compare expression of checked genes

Potri.014G035300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.