Plant FIBer expression Database

Potri.014G035400 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT2G26520 86 / 2e-22 unknown protein
AT3G57500 60 / 2e-12 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.004G144400
[exp]
103 / 3e-29 AT2G26520 81 / 3e-20 unknown protein
Potri.009G106300
[exp]
97 / 5e-27 AT2G26520 77 / 4e-19 unknown protein
Potri.006G052500
[exp]
52 / 1e-09 AT3G57500 68 / 7e-16 unknown protein
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10021765
[exp]
113 / 3e-33 AT2G26520 79 / 7e-20 unknown protein
Lus10032762
[exp]
113 / 3e-33 AT2G26520 81 / 3e-20 unknown protein
Lus10020993
[exp]
68 / 7e-16 AT2G26520 67 / 2e-15 unknown protein
Lus10023859
[exp]
60 / 9e-13 AT2G26520 66 / 5e-15 unknown protein
Lus10012197
[exp]
41 / 2e-05 AT3G57500 68 / 6e-16 unknown protein
PFAM info
Representative CDS sequence
>Potri.014G035400.1 pacid=42762581 polypeptide=Potri.014G035400.1.p locus=Potri.014G035400 ID=Potri.014G035400.1.v4.1 annot-version=v4.1
ATGTCGATGCTGTTAGACCAGCAACCACCACCAATGTCTGTAACCCCGCAATCTTTCAACACCTACTCAACGCACGCTTCAATTGGTCCGGCTATTGCAG
TACTTGTAGTGATCATGGTCTTTGGTGTACTTGCTGTTATGGTTGGAAGGCTCTGCTCGGGAAGGAGAATCATGGGTTATGGCCAGTACGATATGGAGAG
TTGGGCAGAGGTAAAATGTTCTTCCTGCATTGATGGAAGGATTAGCCCCCCACTTTCGAGGTCAAGTGTGCCTGCCACCTCTAGTTCAGCCTCGACGCCT
GCCCAAACCCAACAAGAAACCAAGCAAGAAGAGCAATCTCCTCAACACCCACCTGAAAATCTTGATTCTTAA
AA sequence
>Potri.014G035400.1 pacid=42762581 polypeptide=Potri.014G035400.1.p locus=Potri.014G035400 ID=Potri.014G035400.1.v4.1 annot-version=v4.1
MSMLLDQQPPPMSVTPQSFNTYSTHASIGPAIAVLVVIMVFGVLAVMVGRLCSGRRIMGYGQYDMESWAEVKCSSCIDGRISPPLSRSSVPATSSSASTP
AQTQQETKQEEQSPQHPPENLDS

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT2G26520 unknown protein Potri.014G035400
[exp]
0 1
AT3G54770 RNA-binding (RRM/RBD/RNP motif... Potri.008G044700
[exp]
3.46 0.8789
AT3G61640 AGP20, ATAGP20 arabinogalactan protein 20 (.1... Potri.014G094800
[exp]
5.38 0.9203 AGP20.1
Potri.008G195700
[exp]
11.61 0.8905
AT1G19580 GAMMACA1 ,GAMMA... gamma carbonic anhydrase 1 (.1... Potri.002G034100
[exp]
15.68 0.8919 APFI.1
Potri.004G053600
[exp]
17.97 0.8653
AT2G28630 KCS12 3-ketoacyl-CoA synthase 12 (.1... Potri.009G026800
[exp]
19.44 0.8765
AT5G40940 FLA20 putative fasciclin-like arabin... Potri.008G128200
[exp]
29.51 0.8467
AT5G04160 Nucleotide-sugar transporter f... Potri.006G046600
[exp]
37.66 0.8732
AT3G08900 RGP3 reversibly glycosylated polype... Potri.008G097600
[exp]
38.40 0.8809 Pt-RGP3.4
AT3G02120 hydroxyproline-rich glycoprote... Potri.017G094200
[exp]
41.37 0.8749

Potri.014G035400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.