Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G66850 452 / 8e-149 MAPKKK5 mitogen-activated protein kinase kinase kinase 5 (.1) AT1G53570 313 / 1e-96 MAPKKK3, MAP3KA MAP KINASE KINASE KINASE 3, mitogen-activated protein kinase kinase kinase 3 (.1.2.3.4.5) AT1G63700 318 / 4e-96 EMB71, MAPKKK4, YDA YODA, MAP KINASE KINASE KINASE 4, EMBRYO DEFECTIVE 71, Protein kinase superfamily protein (.1) AT1G09000 238 / 4e-68 MAPKKK1, ANP1 MAP KINASE KINASE KINASE 1, NPK1-related protein kinase 1 (.1) AT3G06030 236 / 1e-67 AtANP3, MAPKKK12, ANP3 NPK1-related protein kinase 3 (.1) AT1G54960 233 / 4e-67 MAPKKK2, ANP2 MITOGEN-ACTIVATED PROTEIN KINASE KINASE KINASES 2, NPK1-related protein kinase 2 (.1) AT4G08500 225 / 5e-64 ARAKIN, ATMEKK1, MAPKKK8, MEKK1 MAPK/ERK kinase kinase 1 (.1) AT4G08470 221 / 8e-63 MEKK3, MAPKKK10 MAPK/ERK kinase kinase 3 (.1) AT3G13530 215 / 4e-58 MAPKKK7, MAP3KE1 MAP3K EPSILON PROTEIN KINASE, mitogen-activated protein kinase kinase kinase 7 (.1) AT3G07980 215 / 5e-58 MAPKKK6, MAP3KE2 MAP3K EPSILON PROTEIN KINASE 2, mitogen-activated protein kinase kinase kinase 6 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G129100 [exp] 976 / 0 AT5G66850 441 / 5e-145 mitogen-activated protein kinase kinase kinase 5 (.1) Potri.005G135100 [exp] 459 / 7e-152 AT5G66850 589 / 0.0 mitogen-activated protein kinase kinase kinase 5 (.1) Potri.007G039800 [exp] 452 / 1e-149 AT5G66850 511 / 3e-173 mitogen-activated protein kinase kinase kinase 5 (.1) Potri.015G146700 [exp] 326 / 8e-99 AT1G63700 826 / 0.0 YODA, MAP KINASE KINASE KINASE 4, EMBRYO DEFECTIVE 71, Protein kinase superfamily protein (.1) Potri.012G143900 [exp] 323 / 3e-97 AT1G63700 766 / 0.0 YODA, MAP KINASE KINASE KINASE 4, EMBRYO DEFECTIVE 71, Protein kinase superfamily protein (.1) Potri.001G102900 [exp] 315 / 1e-94 AT1G63700 868 / 0.0 YODA, MAP KINASE KINASE KINASE 4, EMBRYO DEFECTIVE 71, Protein kinase superfamily protein (.1) Potri.005G062500 [exp] 306 / 8e-94 AT1G53570 566 / 0.0 MAP KINASE KINASE KINASE 3, mitogen-activated protein kinase kinase kinase 3 (.1.2.3.4.5) Potri.007G106800 [exp] 305 / 2e-93 AT1G53570 582 / 0.0 MAP KINASE KINASE KINASE 3, mitogen-activated protein kinase kinase kinase 3 (.1.2.3.4.5) Potri.003G129000 [exp] 311 / 3e-93 AT1G63700 850 / 0.0 YODA, MAP KINASE KINASE KINASE 4, EMBRYO DEFECTIVE 71, Protein kinase superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10021766 [exp] 477 / 1e-156 AT5G66850 452 / 7e-148 mitogen-activated protein kinase kinase kinase 5 (.1) Lus10009339 [exp] 447 / 2e-146 AT5G66850 568 / 0.0 mitogen-activated protein kinase kinase kinase 5 (.1) Lus10019635 [exp] 446 / 2e-146 AT5G66850 561 / 0.0 mitogen-activated protein kinase kinase kinase 5 (.1) Lus10022461 [exp] 426 / 5e-133 AT5G66810 756 / 0.0 unknown protein Lus10016768 [exp] 393 / 3e-128 AT5G66850 460 / 3e-155 mitogen-activated protein kinase kinase kinase 5 (.1) Lus10014976 [exp] 327 / 5e-100 AT1G63700 704 / 0.0 YODA, MAP KINASE KINASE KINASE 4, EMBRYO DEFECTIVE 71, Protein kinase superfamily protein (.1) Lus10032279 [exp] 320 / 1e-96 AT1G63700 904 / 0.0 YODA, MAP KINASE KINASE KINASE 4, EMBRYO DEFECTIVE 71, Protein kinase superfamily protein (.1) Lus10024645 [exp] 319 / 2e-96 AT1G63700 905 / 0.0 YODA, MAP KINASE KINASE KINASE 4, EMBRYO DEFECTIVE 71, Protein kinase superfamily protein (.1) Lus10032761 [exp] 313 / 5e-96 AT5G66850 303 / 8e-93 mitogen-activated protein kinase kinase kinase 5 (.1) Lus10027496 [exp] 314 / 3e-94 AT1G63700 855 / 0.0 YODA, MAP KINASE KINASE KINASE 4, EMBRYO DEFECTIVE 71, Protein kinase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [poplar] [flax] PKinase PF14531 [poplar] [flax] Kinase-like Kinase-like
Representative CDS sequence Show only first row Show all	>Potri.014G035500.2 pacid=42763762 polypeptide=Potri.014G035500.2.p locus=Potri.014G035500 ID=Potri.014G035500.2.v4.1 annot-version=v4.1 ATGCCTTTCTTTTCAAAAACTCCCTCCTCTTCTATGCCATCATCTCCCTCTGTTTCTTCCACAAAAGATAACAGCAACAACTACAGTAACACTGCTGGTA CTTCCTGGATTAACCGTGGCCAATCTTTTATGCTCAAGAAGATGGAACGGCAGAGGAAGCCTAGGCCTGTCAGCGAGCAGGACCTTGGCTGGAATTTAAC CGACCGACCAAATTCGCCGTCTGGTGACCCTGATTCTGCCAAAAAGTCACGGTCTCCTAGCGGGACGGATCACTGGTCTTCGGTGGCCGTCCCGCATCCA TTGCCAGTACCTGTATCACTTTTGACTAGGAGACAGGAGCCGTTGGGTTCGATTTTGGGCCATGGTCATCTCGGCTCACCCGAAGAAGGGCCGAACCATG TGGTAAGGAGGAAAAACACCGATCAAATTGCTACAAAATTTGCCAAACCTTCAAGCAATTTTCGTCAGAGGTTTTCTCAGCACGCAAATCTTGACAGCAC CAGTCGTGACTTAAGACTGAAAATTCAGGCCAGAAGTGCCCCGACAAGTGGTTTCTCAAGTCCTTCTGCCAGTCCACGACGATCAAATGCCACGGATCTT TTTGCTTCTCATGTTGCCACTGAATTGACTAAATCTCCAGGGAATAGTAACAGGGTTCTGTCTCATGATCTAAATATCGAAGGTGCAAATTACAAGTCCA GTTTGATTTCTTCTCCTAGGAGTGCCCCAATAAGTGGACTCCCAAGTCCTGCTACTGTTAGCCCACAAAGATCATACACTGGAGATTTTTTACCTTCTTT CGTGGCTTCTCAAGAATCGCAGGTTCGGTCAACTTTGAAGATTCCTGACTTGGGTAGGCTTGCAATCCATTCTTCACAAGTGCCACCAGTTAAAACTGTG TTTAGTCCTGATCATTCTCCACTTCGCAGCCCAACGTTACAAAGTCCCTGTGTCGACCTTGAAAATAAATTTTATTTTCGATCACATCATAAATTGCTTC AGGGAAGTTCTAAGGAGTGGCCTGAAAACAGTCGTGTAAGTGCTCATCCGTTTCCTCTTTCCCGGTTTCCTCCTCCTCATCCGTTGCCTCTTCCTCCTGG AGCTGCACCACCACAATCCATGCCATCCCCACCTACTATCATCCATAACACATTAGAAAAACTAAATGAACCATTAAGAAAAAATCAGTGGGTGAAAGGA AAACTTATTGGATCTGGTACATATGGAAGAGTTTATATGGGAACCAACAGAGTGACTGGAGCCTCATGTGCAATGAAGGAAGTTGATATCATCCCCGATG ATCCAAAATCTGCTGAATGTATAAAGCAGTTGGAGCAGGAAATCAGAGTTCTACGTGATCTAAAGCATCCAAATATAGTGCAATATTATGGCTGTGAGAT CGTTGATGATCAATTTTACATATATTTGGAGTATATTAATCCAGGATCGATCAATAAGTATGTTCGTGAACATTGCGGACATATGACAGAATCTATAGTC CGCAATTTCACTCGCCATATTCTCTCTGGATTGGCTTATTTGCACAGTAAAAAGACGGTCCACAGAGACATTAAAGGTGCAAATTTGCTTGTTGATGCAT CAGGAGTTGTTAAGCTCACAGATTTTGGGACGGCAAAACATCTTACAGGACTATCATATGAATTGTCCTTGAAGGGCAGTCCACACTGGATGGCTCCAGA GGTCATTAAAGCTGTAATGCTGAAAAGTGGCAATCCTGAACTTGCTTTTGCTGTTGATACATGGAGTCTGGGTTGCACCATCATTGAGATGTTTACTGGA AAACCTCCATGGGGTGACCTTCAGGGGGCTCAAGCTATGTTCAAGATATTGAATAAAGATCCACCTATGCCCGAAACCTTGTCACCAGAGGGAAAAGATT TCCTTCGTCGTTGCTTTCGAAGGAATCCAGCAGAGCGTCCATCAGCTATGATGCTACTTGAGCATCCTTTCGTGTGCAAGGCAAGCGATCTTAATGTGTC AGCAAGCAGAGAAGCAATACCTGCAGTGAACCTTGAGGATAATTCACAGAGTTTGAGAGACCGCACCGCAGAAAATGATGTGTCGCCAACCTCCCCAGGC ATGCGGATGAGGAACCATCGACTGCCAAGTAGCAGTGAGACCAGTCAGCAAAGCCATGCTTACACATTCAACTGTGCTGCAACTTCTCATCACCCACCTT GTTCAACACTCGAAGCTCGCCCTTATCTAACGGCAGCACAACTAGTTCATGGTTCACATAATTTCATCTCTTCTTCAAATGTTTCTAGCAATGTGCATTT AAGGAGTCATGGAAGGGAAATTCCACATATCTGA
AA sequence Show only first row Show all	>Potri.014G035500.2 pacid=42763762 polypeptide=Potri.014G035500.2.p locus=Potri.014G035500 ID=Potri.014G035500.2.v4.1 annot-version=v4.1 MPFFSKTPSSSMPSSPSVSSTKDNSNNYSNTAGTSWINRGQSFMLKKMERQRKPRPVSEQDLGWNLTDRPNSPSGDPDSAKKSRSPSGTDHWSSVAVPHP LPVPVSLLTRRQEPLGSILGHGHLGSPEEGPNHVVRRKNTDQIATKFAKPSSNFRQRFSQHANLDSTSRDLRLKIQARSAPTSGFSSPSASPRRSNATDL FASHVATELTKSPGNSNRVLSHDLNIEGANYKSSLISSPRSAPISGLPSPATVSPQRSYTGDFLPSFVASQESQVRSTLKIPDLGRLAIHSSQVPPVKTV FSPDHSPLRSPTLQSPCVDLENKFYFRSHHKLLQGSSKEWPENSRVSAHPFPLSRFPPPHPLPLPPGAAPPQSMPSPPTIIHNTLEKLNEPLRKNQWVKG KLIGSGTYGRVYMGTNRVTGASCAMKEVDIIPDDPKSAECIKQLEQEIRVLRDLKHPNIVQYYGCEIVDDQFYIYLEYINPGSINKYVREHCGHMTESIV RNFTRHILSGLAYLHSKKTVHRDIKGANLLVDASGVVKLTDFGTAKHLTGLSYELSLKGSPHWMAPEVIKAVMLKSGNPELAFAVDTWSLGCTIIEMFTG KPPWGDLQGAQAMFKILNKDPPMPETLSPEGKDFLRRCFRRNPAERPSAMMLLEHPFVCKASDLNVSASREAIPAVNLEDNSQSLRDRTAENDVSPTSPG MRMRNHRLPSSSETSQQSHAYTFNCAATSHHPPCSTLEARPYLTAAQLVHGSHNFISSSNVSSNVHLRSHGREIPHI

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G66850		MAPKKK5	mitogen-activated protein kina...		Potri.014G035500 [exp]	0	1
					Potri.004G188300 [exp]	1.41	0.9435
AT1G30755			Protein of unknown function (D...		Potri.005G240300 [exp]	1.73	0.9373
					Potri.017G027900 [exp]	2.00	0.9378
AT4G04450	WRKY	ATWRKY42, WRKY4...	WRKY family transcription fact...		Potri.004G007500 [exp]	3.46	0.9362	Pt-WRKY6.1
AT2G38470	WRKY	ATWRKY33, WRKY3...	WRKY DNA-binding protein 33 (....		Potri.019G123500 [exp]	3.87	0.9333
AT1G27100			Actin cross-linking protein (....		Potri.010G035100 [exp]	4.47	0.9054
AT5G48380		BIR1	BAK1-interacting receptor-like...		Potri.010G178050 [exp]	4.58	0.9321
AT2G19460			Protein of unknown function (D...		Potri.006G147700 [exp]	5.47	0.9331
AT3G28450			Leucine-rich repeat protein ki...		Potri.001G349900 [exp]	5.74	0.9208
AT4G05200		CRK25	cysteine-rich RLK (RECEPTOR-li...		Potri.011G028400 [exp]	5.83	0.8921

Compare expression of checked genes

Potri.014G035500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.