Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G47720 158 / 6e-46 OSB1 Organellar Single-stranded, Primosome PriB/single-strand DNA-binding (.1) AT5G44785 114 / 4e-28 OSB3 organellar single-stranded DNA binding protein 3 (.1.2) AT4G20010 109 / 1e-26 PTAC9, OSB2 ORGANELLAR SINGLE-STRANDED DNA BINDING PROTEIN 2, plastid transcriptionally active 9 (.1.2) AT1G31010 89 / 1e-19 OSB4 organellar single-stranded DNA binding protein 4 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G129166 [exp] 221 / 7e-71 AT1G47720 84 / 2e-19 Organellar Single-stranded, Primosome PriB/single-strand DNA-binding (.1) Potri.005G218100 [exp] 112 / 1e-28 AT1G47720 114 / 6e-30 Organellar Single-stranded, Primosome PriB/single-strand DNA-binding (.1) Potri.002G045100 [exp] 111 / 7e-28 AT1G47720 112 / 2e-29 Organellar Single-stranded, Primosome PriB/single-strand DNA-binding (.1) Potri.001G394200 [exp] 102 / 3e-24 AT4G20010 269 / 7e-88 ORGANELLAR SINGLE-STRANDED DNA BINDING PROTEIN 2, plastid transcriptionally active 9 (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10021767 [exp] 278 / 8e-91 AT1G47720 124 / 1e-31 Organellar Single-stranded, Primosome PriB/single-strand DNA-binding (.1) Lus10018763 [exp] 119 / 1e-30 AT1G47720 109 / 3e-28 Organellar Single-stranded, Primosome PriB/single-strand DNA-binding (.1) Lus10024852 [exp] 117 / 4e-30 AT1G47720 110 / 2e-28 Organellar Single-stranded, Primosome PriB/single-strand DNA-binding (.1) Lus10014728 [exp] 114 / 4e-29 AT1G47720 106 / 3e-27 Organellar Single-stranded, Primosome PriB/single-strand DNA-binding (.1) Lus10002722 [exp] 49 / 1e-06 AT5G44785 57 / 2e-09 organellar single-stranded DNA binding protein 3 (.1.2) Lus10032760 [exp] 135 / 1e-05 AT1G47720 74 / 2e-15 Organellar Single-stranded, Primosome PriB/single-strand DNA-binding (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0021 [poplar] [flax] OB PF00436 [poplar] [flax] SSB Single-strand binding protein family
Representative CDS sequence Show only first row Show all	>Potri.014G035600.1 pacid=42764199 polypeptide=Potri.014G035600.1.p locus=Potri.014G035600 ID=Potri.014G035600.1.v4.1 annot-version=v4.1 ATGATTAATCCGTACCGTATCGGGTTCCTGATTAGGAACCTGTCCCGATTTTCACTTCAAAGACTCGCTCCCTTCTCTTCATCGTCTGCTGCAAACCTTA GATTTTCGAATTCCTCTACGGATGAAGACGAGTTAGACGAAATCAATGATAGCGCAGTTTATCGACACACTATCTCAACCCAGCGGCCGTCCACCGTAGA ATGGAAACCGAGCTTGGTGAATTTGGTTAGATTTATCGGTACAGTGGATCGGTCCCCGGTAATCTACAAAACTAAAGGCGGTGGATTTGGTTGTTACACT CTACTCTACGCAAGAGATCCACATGATTCGAATCGCTGGTTCAGGATTCTAGTGGAGACGTGGTGTGAAATGGCGAAAATGTGCATTCAACATGTAAAGC CAAACGATATTATCTATGTTTCGGGTCATTTAGAATCTTACCTCAGTTTTGACCGGACTGGAAATCCAAGTTCCAGTTACAAGATAATTGCAAATGAATT GTGTTACATTGCACAACATAATCAACGGTCAGACTGCCAAAGCCTTGAGGAACCAGAGTCAGAGACCTGCCTAAAATTCAAGGAACCAGAATCAAGTGCT TGTCAAAAATACACGGAGCCATATTCAGGAGCTGGAACTGGCATGGAAAAGGACAAAAACCATCTTTGCTTATGGAAAGCATTTTTCAGCAGCCCACATG AGTGGTGGGATAACAGGAAATTTAAGAAAAATTCAAAGTTACCTGATTTTAAGCACAAGATTAGTGGTGATGCTCTGTGGTTGAGACCAGATGATCCACT GTGGATCAAAACAAAACTTCAATTGCTTGATTGGAAAGCGGGAGAACATTGTGAAGAGGAAAGGCACAAAAACCACCTTTACTTGTGGCAAGTGTTCTTC GCCAGCCCGCATGAATGGTGGGATAACAGGAAAAATAAGAAAAACTCAGCGTCTCCAGATTTTAAGCACAAGGATACTGGTGAAGCTCTTTGGTTGAGTC CTAATGATCCCCCTTGGGTAAAAAGACAAATCCAATTGCTTGATTTAAACATGGCTGTACAGCACCAAGAGAGAGGTGCAGGTTCTCGTGTCTCTCATTG GGTGTATGATGACTGA
AA sequence Show only first row Show all	>Potri.014G035600.1 pacid=42764199 polypeptide=Potri.014G035600.1.p locus=Potri.014G035600 ID=Potri.014G035600.1.v4.1 annot-version=v4.1 MINPYRIGFLIRNLSRFSLQRLAPFSSSSAANLRFSNSSTDEDELDEINDSAVYRHTISTQRPSTVEWKPSLVNLVRFIGTVDRSPVIYKTKGGGFGCYT LLYARDPHDSNRWFRILVETWCEMAKMCIQHVKPNDIIYVSGHLESYLSFDRTGNPSSSYKIIANELCYIAQHNQRSDCQSLEEPESETCLKFKEPESSA CQKYTEPYSGAGTGMEKDKNHLCLWKAFFSSPHEWWDNRKFKKNSKLPDFKHKISGDALWLRPDDPLWIKTKLQLLDWKAGEHCEEERHKNHLYLWQVFF ASPHEWWDNRKNKKNSASPDFKHKDTGEALWLSPNDPPWVKRQIQLLDLNMAVQHQERGAGSRVSHWVYDD

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G47720		OSB1	Organellar Single-stranded, Pr...		Potri.014G035600 [exp]	0	1
AT4G36210			Protein of unknown function (D...		Potri.007G016100 [exp]	14.69	0.5961
AT5G38895			RING/U-box superfamily protein...		Potri.001G068700 [exp]	21.90	0.6214
AT5G24810			ABC1 family protein (.1.2)		Potri.018G003600 [exp]	43.87	0.6050
AT1G56460			HIT zinc finger ;PAPA-1-like c...		Potri.002G195132 [exp]	47.23	0.5893
AT5G40990		GLIP1	GDSL lipase 1 (.1)		Potri.017G134350 [exp]	58.69	0.6030
AT5G40760		G6PD6	glucose-6-phosphate dehydrogen...		Potri.001G337400 [exp]	66.40	0.5742	ACG12.1
AT5G05700		ATATE1, DLS1, A...	DELAYED LEAF SENESCENCE 1, arg...		Potri.008G067000 [exp]	70.72	0.5734	Pt-ATE1.3
AT5G24090		ATCHIA	chitinase A (.1)		Potri.014G092800 [exp]	91.56	0.5737	Pt-CHI3.5
AT1G08370		DCP1, ATDCP1	decapping 1 (.1)		Potri.006G208600 [exp]	105.69	0.5023
AT5G66210		CPK28	calcium-dependent protein kina...		Potri.007G057600 [exp]	110.59	0.5305	CPK16,Pt-CPK16.1

Compare expression of checked genes

Potri.014G035600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.