Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G27040 429 / 3e-144 Major facilitator superfamily protein (.1.2) AT1G69850 423 / 5e-142 NTL1, ATNRT1:2 nitrate transporter 1:2 (.1) AT1G59740 410 / 6e-137 Major facilitator superfamily protein (.1) AT1G33440 395 / 8e-131 Major facilitator superfamily protein (.1) AT2G02040 370 / 2e-121 NTR1, ATPTR2-B NITRATE TRANSPORTER 1, ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 2, peptide transporter 2 (.1) AT5G62730 367 / 4e-120 Major facilitator superfamily protein (.1) AT1G68570 363 / 3e-118 Major facilitator superfamily protein (.1) AT5G01180 357 / 3e-116 ATPTR5 ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 5, peptide transporter 5 (.1) AT3G54140 355 / 9e-116 ATPTR1 ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 1, peptide transporter 1 (.1) AT1G62200 347 / 2e-112 AtPTR6 peptide transporter 6, Major facilitator superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G129500 [exp] 933 / 0 AT1G27040 456 / 5e-155 Major facilitator superfamily protein (.1.2) Potri.004G064100 [exp] 498 / 3e-171 AT1G59740 417 / 2e-139 Major facilitator superfamily protein (.1) Potri.005G001400 [exp] 476 / 4e-162 AT1G59740 372 / 2e-121 Major facilitator superfamily protein (.1) Potri.001G272900 [exp] 464 / 5e-158 AT1G59740 407 / 1e-135 Major facilitator superfamily protein (.1) Potri.003G000800 [exp] 421 / 2e-140 AT1G59740 821 / 0.0 Major facilitator superfamily protein (.1) Potri.004G229000 [exp] 414 / 4e-138 AT1G59740 808 / 0.0 Major facilitator superfamily protein (.1) Potri.010G034300 [exp] 413 / 4e-138 AT1G69850 781 / 0.0 nitrate transporter 1:2 (.1) Potri.012G070700 [exp] 400 / 7e-133 AT1G69850 686 / 0.0 nitrate transporter 1:2 (.1) Potri.019G067500 [exp] 400 / 1e-132 AT1G33440 734 / 0.0 Major facilitator superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10032876 [exp] 761 / 0 AT1G27040 445 / 1e-150 Major facilitator superfamily protein (.1.2) Lus10006477 [exp] 746 / 0 AT1G27040 439 / 2e-148 Major facilitator superfamily protein (.1.2) Lus10002793 [exp] 648 / 0 AT1G27040 418 / 7e-141 Major facilitator superfamily protein (.1.2) Lus10005417 [exp] 469 / 5e-160 AT1G69850 446 / 1e-150 nitrate transporter 1:2 (.1) Lus10015240 [exp] 469 / 1e-159 AT1G69850 469 / 1e-159 nitrate transporter 1:2 (.1) Lus10037217 [exp] 432 / 1e-145 AT1G69850 813 / 0.0 nitrate transporter 1:2 (.1) Lus10036710 [exp] 422 / 2e-141 AT1G69850 822 / 0.0 nitrate transporter 1:2 (.1) Lus10013276 [exp] 410 / 9e-137 AT1G69850 780 / 0.0 nitrate transporter 1:2 (.1) Lus10030799 [exp] 406 / 5e-135 AT1G69850 771 / 0.0 nitrate transporter 1:2 (.1) Lus10033101 [exp] 404 / 2e-134 AT5G62730 748 / 0.0 Major facilitator superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0015 [poplar] [flax] MFS PF00854 [poplar] [flax] PTR2 POT family
Representative CDS sequence Show only first row Show all	>Potri.014G036200.1 pacid=42764259 polypeptide=Potri.014G036200.1.p locus=Potri.014G036200 ID=Potri.014G036200.1.v4.1 annot-version=v4.1 ATGGGCATCTCAAGAGATGTGAAAATCGAATCCAAGCCAGAAAGAAGGCTAGGAGGAAACAGAGCTGCATTCTTTGTATACACTATGGAGGGACTAGAAA ACATGGCATTCGTCTGTATGATTGCGAGCCTGATGACTTATTTCTCTGGGTACATGAACTTCAGCCTAACCAAATCTGCCACTACACTTACCAACTTCGT TGGTACTTCTTTCTTAGTGGCGCTGTTTGGAGGGTTCATATGTGATACCTATTGGACAAGATTCAAGACTTGTGTCTTGTTTGGATGCGTGGAGTTCTTG GGATATGCCCTCCTGACGGTTCAAGCACACTTCCACCAACTAAGACCAATTCCTTGCAAAGACGTTTCATCTGATCAGTGTGAGGCTGCTGATGGTAGCC AATCTGCAATACTTTTCACCGGTCTGTACCTTATTGCATTTGGTACTAGTGGCATCAAAGCAGCTCTGCCATCTTTAGGAGCTGACCAATTCGACGAGAA CGACCCCAAGGAGGCAATTCAATTGTCTAGTTTCTTCAACTGGTTCTTGCTTAGCCTCACCGTTGGAGCTATAATAGGAGTCACTGTTATTGTATGGTTA AGTGCTAACCTAGGCTGGGATTTGGGGTTTGGTGTGTGTGCCATAGCAGTCTTTTTCGCCATTATCTTTGTAGGCATGGGCAAGTCCTTGTATCGGAACA ATGTACCTAAGGGAAGCCCCCTCGCACGCATTGCACAGGTATTTGTGGCTGCAATCCGGAACCGCGACCTTCCAATTCCAGAGAGGGCTGAAGAATTACA TGAAATTCATGACAAAGAAGCGGGGGTGAAACAAGAAATTCTTCCGAGGACTGGCCAATTCAGGTTCTTGGACCGGGCAGCAATCGCAAACACTACTGAC TGTGCATCAACATCAATCAACCATGGACCTTGGAGGCTATGCACAGTGACACAAGTTGAAGAAACAAAGATCTTGCTTCGCATGCTTCCAGTTATACTTA GCACAGTTTTCATGAACACATGCTTAGCTCAGCTCCAAACTTTTTCGGTCCAACAAAGCACCACCATGGACACAAACGTCTTTGGCTTTAAAGTCCCTGG CCCCTCACTACCAGTAATCCCCCTACTATTCATGTTTGTTATGATCCCAATATACGAACGCTTCTTTGTACCACTTGCTCGAAAGATCACAGGGATTCCA ACTGGAATTCGACACCTCCAGCGCGTTGGAGTCGGGCTAGTGCTCTCAGTCATCTCCATGGCAGTTTCTGGAGTTGTGGAAACATGGCGCAAATCGGTGG CTATTGAACACAACATGGTTGACTCTACTGAGCCCCTGCCAATGAGTTTCTTATGGCTTGGTTTCCAATTCGCCATTTTTGGAGCAGCTGATATGTTCAC ATTAGTTGGACTGCTAGAATTTTTCTATGCAGAGAGCTCGGCCGGAATGAAATCGCTGGGCACAGCTATCTCATGGTGTTCAGTGGCATTTGGCTACTTC TTGAGCTCTCTGGTGGTGCAGGTGGTAAACAAAGTTACTGGTGGATGGCTGGCTAGCGACAATTTAAATAGAGACAAGTTGAACTACTTTTACTGGCTAT TAGCAGGCATCAGCACAGTGAATTTTGGAGTTTACTTGACGTGTGCATCTTGGTATAGATATAAGGACAGGGGGGCAATGAAGCAAATAGAAAACGGTGG TGAAGACGATGCCAAGGGAAAAGTTCAAATGGTAGAAATTTAG
AA sequence Show only first row Show all	>Potri.014G036200.1 pacid=42764259 polypeptide=Potri.014G036200.1.p locus=Potri.014G036200 ID=Potri.014G036200.1.v4.1 annot-version=v4.1 MGISRDVKIESKPERRLGGNRAAFFVYTMEGLENMAFVCMIASLMTYFSGYMNFSLTKSATTLTNFVGTSFLVALFGGFICDTYWTRFKTCVLFGCVEFL GYALLTVQAHFHQLRPIPCKDVSSDQCEAADGSQSAILFTGLYLIAFGTSGIKAALPSLGADQFDENDPKEAIQLSSFFNWFLLSLTVGAIIGVTVIVWL SANLGWDLGFGVCAIAVFFAIIFVGMGKSLYRNNVPKGSPLARIAQVFVAAIRNRDLPIPERAEELHEIHDKEAGVKQEILPRTGQFRFLDRAAIANTTD CASTSINHGPWRLCTVTQVEETKILLRMLPVILSTVFMNTCLAQLQTFSVQQSTTMDTNVFGFKVPGPSLPVIPLLFMFVMIPIYERFFVPLARKITGIP TGIRHLQRVGVGLVLSVISMAVSGVVETWRKSVAIEHNMVDSTEPLPMSFLWLGFQFAIFGAADMFTLVGLLEFFYAESSAGMKSLGTAISWCSVAFGYF LSSLVVQVVNKVTGGWLASDNLNRDKLNYFYWLLAGISTVNFGVYLTCASWYRYKDRGAMKQIENGGEDDAKGKVQMVEI

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G27040			Major facilitator superfamily ...		Potri.014G036200 [exp]	0	1
AT3G46280			protein kinase-related (.1)		Potri.013G030866 [exp]	2.82	0.9631
AT5G06905		CYP712A2	"cytochrome P450, family 712, ...		Potri.006G058100 [exp]	3.16	0.9522	Pt-CYP712.3
AT5G62280			Protein of unknown function (D...		Potri.015G130500 [exp]	5.29	0.9504
AT4G35160			O-methyltransferase family pro...		Potri.011G059500 [exp]	5.47	0.9580	Pt-OOMT2.14,FOMT7
AT4G03965			RING/U-box superfamily protein...		Potri.004G003101 [exp]	6.24	0.9403
AT1G77380		AAP3, ATAAP3	amino acid permease 3 (.1)		Potri.005G181500 [exp]	7.34	0.9287
AT5G06490			RING/U-box superfamily protein...		Potri.010G243500 [exp]	8.12	0.9535
AT2G37740	C2H2ZnF	ATZFP10, ZFP10	zinc-finger protein 10 (.1)		Potri.016G101400 [exp]	8.24	0.9531	RBE.1
AT1G24020		MLP423	MLP-like protein 423 (.1.2)		Potri.013G131000 [exp]	8.24	0.9167
AT2G19210			Leucine-rich repeat transmembr...		Potri.013G030800 [exp]	9.16	0.9517

Compare expression of checked genes

Potri.014G036200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.