Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G47310 325 / 7e-109 unknown protein AT5G64510 134 / 3e-35 TIN1 tunicamycin induced 1, unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G081500 [exp] 108 / 1e-25 AT5G64510 515 / 0.0 tunicamycin induced 1, unknown protein
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10032753 [exp] 401 / 1e-133 AT1G06870 379 / 3e-125 plastidic type I signal peptidase 2A, Peptidase S24/S26A/S26B/S26C family protein (.1) Lus10011672 [exp] 385 / 4e-132 AT1G47310 312 / 7e-104 unknown protein Lus10020502 [exp] 123 / 3e-31 AT5G64510 555 / 0.0 tunicamycin induced 1, unknown protein Lus10012458 [exp] 121 / 2e-30 AT5G64510 543 / 0.0 tunicamycin induced 1, unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.014G036300.2 pacid=42763443 polypeptide=Potri.014G036300.2.p locus=Potri.014G036300 ID=Potri.014G036300.2.v4.1 annot-version=v4.1 ATGAGTGGCCTTCGTCGTCGTCGTTTCCCCTCCCCTCTCCTCTCTTTACTCATCTTCCAAATTCTACCATTAACTATATCATTTACTCCTAATCACCTTA ATGACAACAACACTCAATTCCTTAAGGACGTTTTGAAGGAGATATCGGTGAAGCAAGATTGGGATTTGGAGGGAATTGAGATTTCGAAGCTGGAAGTGAG TAAAGTTAGGATTTTTAGTTCTCAGAGATATGAGTTTAAGATCCGAGTTGGTAAAAGTTACATGCTACTTAAATTCCCTGATGAAATAGATTCTCGGAAG AAGTTGAGCAAACCAAAATCAAGTATTGATTTTGGAGACTTAATTAAAGAATTCGGTTCCGTGCCTGTACTTGACACTTTGAAACTCCAAGGCCCTTTTG ATTTGTGGGTCAGTGGCCATGACAATTTCTCTCTGCTATTGCCGATGAATGCTTCATATGGTGGTCTGAAACGAATAATAGTGGGAGAAGGAATCTCTGT AGAAGTGAAAGGAGCTAAAGAGGTTTCTCTTTTTCAAGATTTTGATCTTAGTTTGGCTTTGAATGGAAGTGATATTAATAATAATAAGGGGGGAAATGGT TTCTACCCTTTCGGGGATTCGATCTGCCCGCCGTTATTACCTATAAGAATTATTGGATCTGCATCGCTTGTTGCCAACAAGAATTGGGACCCTGATGCTG AAATTGAAACGAGATTGTTATCAAAGAAGACTATCGAGTTGGTATCTGATAAGTGTTACGATAGGAATGTGTACAAGATTCGGGCTAGCACCATGCACTT TTTAAGTTCCAGTATTGCTAGGCTGGAAGAAGTTTTGAGAAGTTTTCTTGGTGACAGAATTACTCGAAATGGATTGTCGAGCTTTCTTAGAGCAACTGCT AAAGCATCAACACTGATTCGTTTTCAATTAGAACTGGAGAAGAGTTTCGGGAGCAACGAGACTGCTCAAGAAGTGTTTGCAGAGTGGAGAACGAGGCCTA CTGTTGAACGGGTTTGGTTTGAGGTAATAGCAAGAGTTGAGGGTGAGAAGCTAAAACCCGTAATTGTTAAGAAGGTTAGACCTTTTATTGCTGTTGATTC TGCATCTTGGAGTAATTTAATGTCTAATATTTCCTTCACAAATTTCCCATCTGTTCTTTTACCTCCTGAGGCTCTAACACTGGATGTGAAATGGTAG
AA sequence Show only first row Show all	>Potri.014G036300.2 pacid=42763443 polypeptide=Potri.014G036300.2.p locus=Potri.014G036300 ID=Potri.014G036300.2.v4.1 annot-version=v4.1 MSGLRRRRFPSPLLSLLIFQILPLTISFTPNHLNDNNTQFLKDVLKEISVKQDWDLEGIEISKLEVSKVRIFSSQRYEFKIRVGKSYMLLKFPDEIDSRK KLSKPKSSIDFGDLIKEFGSVPVLDTLKLQGPFDLWVSGHDNFSLLLPMNASYGGLKRIIVGEGISVEVKGAKEVSLFQDFDLSLALNGSDINNNKGGNG FYPFGDSICPPLLPIRIIGSASLVANKNWDPDAEIETRLLSKKTIELVSDKCYDRNVYKIRASTMHFLSSSIARLEEVLRSFLGDRITRNGLSSFLRATA KASTLIRFQLELEKSFGSNETAQEVFAEWRTRPTVERVWFEVIARVEGEKLKPVIVKKVRPFIAVDSASWSNLMSNISFTNFPSVLLPPEALTLDVKW

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G47310			unknown protein		Potri.014G036300 [exp]	0	1
AT2G34900		GTE1, GTE01, IM...	IMBIBITION-INDUCIBLE 1, GLOBAL...		Potri.001G073800 [exp]	1.00	0.8102
AT3G07560		APM2, PEX13	ABERRANT PEROXISOME MORPHOLOGY...		Potri.017G018400 [exp]	8.06	0.7360
AT5G64180			unknown protein		Potri.012G022200 [exp]	16.37	0.7561
AT5G25360			unknown protein		Potri.018G130900 [exp]	17.08	0.7543
AT1G08460		HDA8, HDA08, AT...	histone deacetylase 8 (.1)		Potri.009G020500 [exp]	17.94	0.6820
AT1G55300		TAF7	TBP-associated factor 7 (.1.2)		Potri.003G218700 [exp]	18.57	0.7115
AT3G25120			Mitochondrial import inner mem...		Potri.002G246000 [exp]	20.49	0.6970
AT1G61780			postsynaptic protein-related (...		Potri.004G021200 [exp]	22.73	0.7142
AT1G47740			PPPDE putative thiol peptidase...		Potri.014G042300 [exp]	23.36	0.6845
AT3G03305			Calcineurin-like metallo-phosp...		Potri.010G180800 [exp]	31.62	0.7038

Compare expression of checked genes

Potri.014G036300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.