Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G06870 376 / 1e-129 Plsp2A plastidic type I signal peptidase 2A, Peptidase S24/S26A/S26B/S26C family protein (.1) AT2G30440 373 / 1e-128 Plsp2B, TPP plastidic type I signal peptidase 2B, thylakoid processing peptide (.1) AT3G24590 248 / 2e-80 PLSP1 plastidic type i signal peptidase 1 (.1) AT3G08980 71 / 9e-15 Peptidase S24/S26A/S26B/S26C family protein (.1) AT1G29960 70 / 5e-14 AGL64 Peptidase S24/S26A/S26B/S26C family protein (.1) AT1G53530 69 / 5e-14 Peptidase S24/S26A/S26B/S26C family protein (.1.2) AT1G23465 69 / 7e-14 Peptidase S24/S26A/S26B/S26C family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G157900 [exp] 247 / 2e-79 AT3G24590 357 / 5e-124 plastidic type i signal peptidase 1 (.1) Potri.018G081800 [exp] 246 / 2e-79 AT3G24590 372 / 3e-130 plastidic type i signal peptidase 1 (.1) Potri.002G079600 [exp] 176 / 2e-53 AT3G24590 177 / 3e-55 plastidic type i signal peptidase 1 (.1) Potri.001G380400 [exp] 72 / 4e-15 AT1G53530 227 / 3e-77 Peptidase S24/S26A/S26B/S26C family protein (.1.2) Potri.016G115100 [exp] 64 / 4e-12 AT3G08980 204 / 3e-68 Peptidase S24/S26A/S26B/S26C family protein (.1) Potri.005G092900 [exp] 64 / 6e-12 AT1G53530 189 / 5e-62 Peptidase S24/S26A/S26B/S26C family protein (.1.2) Potri.007G071400 [exp] 56 / 2e-09 AT1G53530 194 / 7e-64 Peptidase S24/S26A/S26B/S26C family protein (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10032753 [exp] 466 / 4e-159 AT1G06870 379 / 3e-125 plastidic type I signal peptidase 2A, Peptidase S24/S26A/S26B/S26C family protein (.1) Lus10023651 [exp] 234 / 7e-75 AT3G24590 318 / 2e-109 plastidic type i signal peptidase 1 (.1) Lus10034925 [exp] 230 / 2e-73 AT3G24590 316 / 1e-108 plastidic type i signal peptidase 1 (.1) Lus10011671 [exp] 201 / 3e-64 AT2G30440 172 / 7e-54 plastidic type I signal peptidase 2B, thylakoid processing peptide (.1) Lus10011670 [exp] 142 / 6e-40 AT1G06870 102 / 3e-25 plastidic type I signal peptidase 2A, Peptidase S24/S26A/S26B/S26C family protein (.1) Lus10002492 [exp] 66 / 1e-12 AT3G08980 191 / 5e-63 Peptidase S24/S26A/S26B/S26C family protein (.1) Lus10005571 [exp] 61 / 6e-11 AT1G53530 213 / 1e-71 Peptidase S24/S26A/S26B/S26C family protein (.1.2) Lus10004822 [exp] 61 / 7e-11 AT3G08980 190 / 9e-63 Peptidase S24/S26A/S26B/S26C family protein (.1) Lus10025393 [exp] 59 / 4e-10 AT1G53530 169 / 3e-54 Peptidase S24/S26A/S26B/S26C family protein (.1.2) Lus10013703 [exp] 59 / 4e-09 AT1G78510 542 / 0.0 solanesyl diphosphate synthase 1 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0299 [poplar] [flax] Peptidase_SF PF10502 [poplar] [flax] Peptidase_S26 Signal peptidase, peptidase S26
Representative CDS sequence Show only first row Show all	>Potri.014G036400.1 pacid=42764737 polypeptide=Potri.014G036400.1.p locus=Potri.014G036400 ID=Potri.014G036400.1.v4.1 annot-version=v4.1 ATGGCGATCAGAGTTACCTTTTCTTTCTCCGGCTACGTTGCCCAAAACCTGGGTGTTCGTGTCGGTAACTGTCGGTATCTCAACGAATGTTTTATCCGGT CACGGATATTTGCTTCACCAGCAACAACCACCACAACACACAATTCTGATATTGAACCCCCTGGCCCGAGAACGGGAACAGATTTTCGCCGCCGAAACCT GAAGAGGAATTATAGTAATTCGGCGGCGATGTATAGTACGATGGCTGGTGAGATTTTTGGAGATAATTGTAAAGGGAGTGCGATTGCGGTTGGATTAGTT TCTCTAATGAAGTCAACGGCTGGGGTTTCTTGTTCTAACATGGGTGCTTGTGGAATTTCACCATTTAAAGCCGTCTCGATCCTTCCGTTCTTGCAAGGAT CGAGGTGGCTTCCGTGTAATGAGGCGGTTCTGGGATCGAGGAGTCCTGAGGTGGATAGAGGAGGGACAGGGACAGTGAAGTCTGTGGAGAAGGTGAGTGA GAGCAAGAGCAGTACTAGTGTGAGCTTCCAGATTAATGGGAAGGAGTTTGAGAGGACAGGAAGTTGGTTTTCAAGGGTTTTTAATGTTTGCTCGGAGGAT GCCAAGGCTATGTTTACTGCTGCTACTGTTAGTTTGTTGTTCAGGTCCACCTTGGCCGAGCCTCGATCCATTCCTTCAAGTTCTATGTCTCCTACTTTGG ACGTGGGCGACCGTATTTTAGCAGAGAAGGTTTCATACGTTTTCAGAAAGCCTGAAGTCTCAGATATAGTCATTTTTAAAGCTCCTCCAATCTTGCAGGA GTTTGGTTTCAGTTCAGGCGATGTATTCATAAAGCGAATTGTGGCAAAGGCTGGAGACTATGTTGAAGTTCGAGAGGGCAAATTATATGTGAACGGTGTT GTTCAAGATGAAGAATTCATCAAGGAGCCACTTGCTTATGAGATGGAATTAGTGCTTGTCCCTGAAGGTTATGTCTTTGTGATGGGGGACAATCGTAATA ATAGTTTTGACTCTCACAACTGGGGCCCGCTTCCTATCAAGAACATTGTTGGTAGGTCAGTATTTCGCTACTGGCCTCCCTCCAAAGTATCCGACACCAT ATACGATCCACACGTGGCAAAGAATGCAATCTCTTGA
AA sequence Show only first row Show all	>Potri.014G036400.1 pacid=42764737 polypeptide=Potri.014G036400.1.p locus=Potri.014G036400 ID=Potri.014G036400.1.v4.1 annot-version=v4.1 MAIRVTFSFSGYVAQNLGVRVGNCRYLNECFIRSRIFASPATTTTTHNSDIEPPGPRTGTDFRRRNLKRNYSNSAAMYSTMAGEIFGDNCKGSAIAVGLV SLMKSTAGVSCSNMGACGISPFKAVSILPFLQGSRWLPCNEAVLGSRSPEVDRGGTGTVKSVEKVSESKSSTSVSFQINGKEFERTGSWFSRVFNVCSED AKAMFTAATVSLLFRSTLAEPRSIPSSSMSPTLDVGDRILAEKVSYVFRKPEVSDIVIFKAPPILQEFGFSSGDVFIKRIVAKAGDYVEVREGKLYVNGV VQDEEFIKEPLAYEMELVLVPEGYVFVMGDNRNNSFDSHNWGPLPIKNIVGRSVFRYWPPSKVSDTIYDPHVAKNAIS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G06870		Plsp2A	plastidic type I signal peptid...		Potri.014G036400 [exp]	0	1
AT2G17220		Kin3	kinase 3, Protein kinase super...		Potri.004G206100 [exp]	1.00	0.9288
AT1G07530	GRAS	SCL14, ATGRAS2	GRAS \(GAI, RGA, SCR\) 2, ARAB...		Potri.009G032700 [exp]	2.00	0.8963
AT1G13580		LOH3, LAG13	LAG One Homologue 3, LAG1 long...		Potri.015G055000 [exp]	3.16	0.9061
AT1G34750			Protein phosphatase 2C family ...		Potri.005G164600 [exp]	4.58	0.9018
AT1G73730	EIL	AtEIL3, ATSLIM,...	ARABIDOPSIS THALIANA SULFUR LI...		Potri.001G015900 [exp]	6.48	0.8921	Pt-EIL3.2
AT3G14470			NB-ARC domain-containing disea...		Potri.018G017900 [exp]	8.66	0.8940	Pt-RGA.54
AT5G66850		MAPKKK5	mitogen-activated protein kina...		Potri.002G129100 [exp]	9.48	0.8802
AT5G58620	C3HZnF		zinc finger (CCCH-type) family...		Potri.001G252600 [exp]	9.53	0.8753
AT4G18880	HSF	AT-HSFA4A ,HSF ...	ARABIDOPSIS THALIANA HEAT SHOC...		Potri.014G141400 [exp]	9.94	0.8794
AT1G34190	NAC	ANAC017	NAC domain containing protein ...		Potri.005G200100 [exp]	12.64	0.8832

Compare expression of checked genes

Potri.014G036400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.