Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G47655 127 / 5e-36 DOF Dof-type zinc finger DNA-binding family protein (.1) AT5G66940 110 / 4e-29 DOF AtDof5. 8 Dof-type zinc finger DNA-binding family protein (.1) AT3G50410 107 / 5e-28 DOF OBP1, AtDof3. 4 OBF binding protein 1 (.1) AT1G07640 104 / 1e-26 DOF OBP2, AtDof1. 1 Dof-type zinc finger DNA-binding family protein (.1.2.3) AT1G51700 102 / 2e-26 DOF ADOF1, AtDof1. 7 DOF zinc finger protein 1 (.1) AT5G60850 103 / 5e-26 DOF OBP4, AtDof5. 4 OBF binding protein 4 (.1) AT5G60200 102 / 8e-26 DOF TMO6, AtDof5,3 TARGET OF MONOPTEROS 6 (.1) AT5G65590 102 / 1e-25 DOF AtDof5,7 Dof-type zinc finger DNA-binding family protein (.1) AT3G21270 100 / 1e-25 DOF ADOF2, AtDof3. 1 DOF zinc finger protein 2 (.1) AT2G28810 102 / 3e-25 DOF AtDof2. 2 Dof-type zinc finger DNA-binding family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G129600 [exp] 323 / 6e-112 AT1G47655 101 / 4e-26 Dof-type zinc finger DNA-binding family protein (.1) Potri.007G036400 [exp] 117 / 2e-31 AT3G50410 170 / 2e-52 OBF binding protein 1 (.1) Potri.005G131600 [exp] 114 / 3e-30 AT3G50410 126 / 3e-35 OBF binding protein 1 (.1) Potri.015G048300 [exp] 104 / 3e-26 AT5G60850 152 / 1e-43 OBF binding protein 4 (.1) Potri.002G174300 [exp] 103 / 4e-26 AT3G61850 229 / 8e-74 dof affecting germination 1, Dof-type zinc finger DNA-binding family protein (.1.2.3.4) Potri.014G100900 [exp] 102 / 5e-26 AT3G61850 233 / 1e-75 dof affecting germination 1, Dof-type zinc finger DNA-binding family protein (.1.2.3.4) Potri.007G038100 [exp] 103 / 6e-26 AT5G60200 122 / 5e-33 TARGET OF MONOPTEROS 6 (.1) Potri.005G134200 [exp] 103 / 7e-26 AT5G60200 124 / 2e-33 TARGET OF MONOPTEROS 6 (.1) Potri.012G063800 [exp] 103 / 1e-25 AT5G60850 137 / 9e-38 OBF binding protein 4 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10034652 [exp] 103 / 5e-26 AT5G60850 162 / 4e-48 OBF binding protein 4 (.1) Lus10036172 [exp] 102 / 5e-26 AT3G55370 109 / 3e-28 OBF-binding protein 3 (.1.2.3) Lus10017882 [exp] 102 / 7e-26 AT5G60850 167 / 3e-50 OBF binding protein 4 (.1) Lus10038310 [exp] 102 / 8e-26 AT3G55370 108 / 9e-28 OBF-binding protein 3 (.1.2.3) Lus10015425 [exp] 102 / 1e-25 AT5G60200 129 / 8e-36 TARGET OF MONOPTEROS 6 (.1) Lus10042114 [exp] 98 / 1e-25 AT5G62940 149 / 7e-45 HIGH CAMBIAL ACTIVITY2, DNA BINDING WITH ONE FINGER 5.6, Dof-type zinc finger DNA-binding family protein (.1) Lus10029458 [exp] 102 / 3e-25 AT3G55370 161 / 6e-47 OBF-binding protein 3 (.1.2.3) Lus10014001 [exp] 101 / 3e-25 AT5G60200 128 / 1e-35 TARGET OF MONOPTEROS 6 (.1) Lus10005956 [exp] 102 / 4e-25 AT3G55370 174 / 8e-52 OBF-binding protein 3 (.1.2.3) Lus10017313 [exp] 100 / 1e-24 AT4G24060 171 / 8e-51 Dof-type zinc finger DNA-binding family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF02701 [poplar] [flax] zf-Dof Dof domain, zinc finger
Representative CDS sequence Show only first row Show all	>Potri.014G036600.1 pacid=42762849 polypeptide=Potri.014G036600.1.p locus=Potri.014G036600 ID=Potri.014G036600.1.v4.1 annot-version=v4.1 ATGCCAACAGAAATAAGCCAGGGACACCCAACAGAAGCCCAAAACACCATGGGGGCTACACACCAACCACCAAAAACGACTGAGCCACTGCCTTGTCCAA GGTGTAACTCCACCACCACGAAGTTTTGCTATTACAATAACTATAACCTCTCTCAACCTCGCCATTTCTGCAAGTCATGCCGCCGTTACTGGACACAAGG TGGAACTCTCCGTGATGTCCCTGTTGGTGGCGGTACACGCAAGAATTCCAAGCGCTCTCGCTCAACTTCAAATAATTCTTCATCAATATCTACCTCATCT TCTAATTCTACTTCCTCGAATTCTGCAATTTTGACTGCTTTCACCACCACTCATGAACCCGAATCCATGCCCGTGGTTTTATCCTCGACTACTGACTCTG GTTTAGCAGCTGTGAAAACTGAGGTACCAGCCGGGTTAAATCTGAATGACGGATTACCTTCTGAAGATGGAAACTTCATTTCGCTCATGAACTCTAACGA TCAGCATGGGTTTACTGGTCTTGGCGGGTATGGATACGCGTCAGGTTTTGGATTCGGGCCTAGTGAAATGGGTATTGGATTTGGTGGAAGAGGATCTTGG TCCTGTCCTGTAATGGAAAATGTTCTTGTTAATGGTGGTACTTCTGGATGTCATCCCTGGCAGCTTGATTGTGATCATGTTGAAGGAGGGGGGCTTCAAG CTGGATTTACAGCAGATACTGAAAATTACTTTGGTTCTTGGCCTGATCTTGTTATGTCTGCTCCAGCAGGAAAGGGTTTGAACTGA
AA sequence Show only first row Show all	>Potri.014G036600.1 pacid=42762849 polypeptide=Potri.014G036600.1.p locus=Potri.014G036600 ID=Potri.014G036600.1.v4.1 annot-version=v4.1 MPTEISQGHPTEAQNTMGATHQPPKTTEPLPCPRCNSTTTKFCYYNNYNLSQPRHFCKSCRRYWTQGGTLRDVPVGGGTRKNSKRSRSTSNNSSSISTSS SNSTSSNSAILTAFTTTHEPESMPVVLSSTTDSGLAAVKTEVPAGLNLNDGLPSEDGNFISLMNSNDQHGFTGLGGYGYASGFGFGPSEMGIGFGGRGSW SCPVMENVLVNGGTSGCHPWQLDCDHVEGGGLQAGFTADTENYFGSWPDLVMSAPAGKGLN

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G47655	DOF		Dof-type zinc finger DNA-bindi...		Potri.014G036600 [exp]	0	1
AT1G12380			unknown protein		Potri.012G129100 [exp]	1.00	0.8064
AT1G62870			unknown protein		Potri.003G115900 [exp]	2.00	0.8027
AT1G54610			Protein kinase superfamily pro...		Potri.013G032200 [exp]	3.46	0.7214
AT5G05365			Heavy metal transport/detoxifi...		Potri.010G182700 [exp]	10.95	0.6843
AT3G49290		ABIL2	ABL interactor-like protein 2 ...		Potri.012G016900 [exp]	12.72	0.6328
AT5G01020			Protein kinase superfamily pro...		Potri.006G113600 [exp]	14.28	0.6465
AT1G78700	BZR	BEH4	BES1/BZR1 homolog 4 (.1)		Potri.011G071800 [exp]	15.16	0.6962
AT3G18280			Bifunctional inhibitor/lipid-t...		Potri.015G044500 [exp]	16.91	0.6612
AT4G31550	WRKY	ATWRKY11, WRKY1...	WRKY DNA-binding protein 11 (....		Potri.006G072400 [exp]	23.00	0.6217
AT5G48800			Phototropic-responsive NPH3 fa...		Potri.002G242300 [exp]	23.15	0.6988

Compare expression of checked genes

Potri.014G036600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.