Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G15880 502 / 2e-170 Leucine-rich repeat (LRR) family protein (.1) AT3G19020 495 / 4e-165 Leucine-rich repeat (LRR) family protein (.1) AT4G33970 479 / 6e-162 Leucine-rich repeat (LRR) family protein (.1) AT1G49490 448 / 5e-148 Leucine-rich repeat (LRR) family protein (.1) AT3G24480 400 / 8e-134 Leucine-rich repeat (LRR) family protein (.1) AT4G13340 400 / 1e-130 LRX3 leucine-rich repeat/extensin 3, Leucine-rich repeat (LRR) family protein (.1) AT1G12040 397 / 2e-129 LRX1 leucine-rich repeat/extensin 1 (.1) AT4G28380 380 / 1e-127 Leucine-rich repeat (LRR) family protein (.1) AT1G62440 390 / 3e-126 LRX2 leucine-rich repeat/extensin 2 (.1) AT5G25550 378 / 3e-126 Leucine-rich repeat (LRR) family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G146350 [exp] 526 / 1e-178 AT2G15880 600 / 0.0 Leucine-rich repeat (LRR) family protein (.1) Potri.009G108100 [exp] 525 / 1e-174 AT3G19020 567 / 0.0 Leucine-rich repeat (LRR) family protein (.1) Potri.006G081200 [exp] 420 / 4e-137 AT1G62440 553 / 0.0 leucine-rich repeat/extensin 2 (.1) Potri.018G151000 [exp] 407 / 5e-136 AT1G62440 533 / 0.0 leucine-rich repeat/extensin 2 (.1) Potri.018G075900 [exp] 408 / 1e-134 AT3G24480 603 / 0.0 Leucine-rich repeat (LRR) family protein (.1) Potri.007G139200 [exp] 399 / 1e-134 AT4G28380 503 / 9e-179 Leucine-rich repeat (LRR) family protein (.1) Potri.010G083000 [exp] 384 / 7e-129 AT3G22800 477 / 7e-167 Leucine-rich repeat (LRR) family protein (.1) Potri.006G158814 [exp] 389 / 1e-128 AT3G24480 614 / 0.0 Leucine-rich repeat (LRR) family protein (.1) Potri.006G245600 [exp] 385 / 3e-127 AT3G24480 516 / 3e-180 Leucine-rich repeat (LRR) family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10021001 [exp] 437 / 4e-146 AT3G19020 490 / 1e-165 Leucine-rich repeat (LRR) family protein (.1) Lus10027935 [exp] 428 / 6e-142 AT1G49490 538 / 6e-180 Leucine-rich repeat (LRR) family protein (.1) Lus10012047 [exp] 424 / 1e-140 AT3G19020 508 / 6e-172 Leucine-rich repeat (LRR) family protein (.1) Lus10033672 [exp] 405 / 3e-137 AT4G28380 488 / 6e-173 Leucine-rich repeat (LRR) family protein (.1) Lus10028097 [exp] 395 / 3e-131 AT1G62440 466 / 7e-157 leucine-rich repeat/extensin 2 (.1) Lus10017727 [exp] 377 / 6e-122 AT3G24480 611 / 0.0 Leucine-rich repeat (LRR) family protein (.1) Lus10039362 [exp] 358 / 2e-119 AT3G22800 416 / 2e-143 Leucine-rich repeat (LRR) family protein (.1) Lus10037905 [exp] 357 / 7e-118 AT4G13340 432 / 9e-149 leucine-rich repeat/extensin 3, Leucine-rich repeat (LRR) family protein (.1) Lus10039363 [exp] 343 / 1e-110 AT3G22800 447 / 1e-152 Leucine-rich repeat (LRR) family protein (.1) Lus10006611 [exp] 334 / 4e-109 AT3G22800 434 / 3e-150 Leucine-rich repeat (LRR) family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0022 [poplar] [flax] LRR PF13855 [poplar] [flax] LRR_8 Leucine rich repeat
Representative CDS sequence Show only first row Show all	>Potri.014G036700.2 pacid=42762965 polypeptide=Potri.014G036700.2.p locus=Potri.014G036700 ID=Potri.014G036700.2.v4.1 annot-version=v4.1 ATGCAGGCCTCTACCTGCTTCTTAGTAATCTGTCTTCTCCTTTTGTCTTCCTTCTCATCTTTCTCCGTAGCTCTGTCTCATTCCGAAGCCTCGTTCATTG CTCGACGCCAACCACTGTCCCTTAAAAAGAATGTGAATTTGCCAGATTACTTCGAATTGAAAATTGAGCTTAACATTACCTTTCCTAATCCAAGGCTTAG AAAAGCATACATTGCACTTCAAGCATGGAAAAAAGCTATACGTTCAGACCCTTTCAATATCACAGGAAACTGGGAAGGGCTGAGAGTTTGTGATTACAAT GGTGTCTTTTGTGCTCCGGCTCTTGATGACCCAAAACAAAACGTTGTAGCTGGAATTGATCTCAACCATTTTGACATTGTCGGCTATCTTCCTGTGGAGT TGGGTCTATTGACAGACATTGCTCTATTTCACATCAATTCCAACAGGTTCAGTGGGATTATTCCTAAAAGTTTCTCAAGGCTAACTCTTCTCCATGAGCT AGATGTGAGCAACAACCGTCTCGTTGGACCATTCCCAGAAGTTGTTATATCATTGCCTTCACTTAAGTACCTTGATATTAGATATAATGATTTCGAGGGT GGATTGCCACCTGAGGTTTTCGAAAAGGATCTTGATGCGTTGTTCTTGAACAACAATAGGTTCACATCAACAATTCCTGAAACTCTTGGATCATCCCCTG CTTCTGTTGTGGTGATTGCCAATAACAAGCTAACAGGCTGCATTCCAAGTAGCATTGGCAAGATGGGCAGCACATTGAACGAATTTGTTTTCTTGAACAA CAGCCTTTCAGGTTGTTTACCGTCCGAGATTGGAAAACTTGGAAATGCAACAGTTCTTGACGTTGGCTCAAATTCATTCAGTGGGGTATTGCCAAGGTGT TTCAAAGGTCTGAGTCAGGTCGAGCGCCTTGATGTTTCCCACAACCTGCTTACAGGTTTTGTTCCTGAAGGAATATGTAAATTGCCAAACTTGGTGAACT TCACATTCTCATATAACTATTTCAATGGCGAGGCACAAGCGTGCAGCCCACCAAAGAGAAAGGACATTACCATGGATGACACAAGCAATTGTTTACCAGA CAGGCCTAAACAGAAATCACCGAAAATATGCCACCCAGTTGTGAGCAAACCTGTTGATTGCAACAAGGCAATGTGTGGAGGATCACCGTCCAGTTCGTCC TTGCCAAAGCCACCTCCACAACCGTCACCATCACCTAAGGCACATCCGCCAAAGGTACCAAAGCCAGCACCTTGTCCACCTAAATTAAAATTGCATCCAA AACCAGCTCCAGCTCCTGCACCAGCACCTACTGATGATCATAATGAAGAATCAACAATCAGCCATTCTCCTTCATCTCCACCTCCATTAGTCTATTCCCC ACCTCCTCCTGCTTACTCTTCGCCACCAACAGCTCATTTAGCACCTCCACTGGTTCACTCACCTCTGCCGCCAGTTCATTCTCCACCAACAGCAGCTCCA GTTCCAGCACCAGCACCTGCTGATAATCCTTCTGACAAATCACCAGTCGACCATTTTCTTTCATCCCCTCCTCCACTAATCCCTTCCCCGCCTCCTCCAG TTCACTCTCCACCACCACCAATTCATTCACCACCCCCTCCGGTTCACTCTCCACCTCCACCTGTCCATTCCCCGCCTCCTCCTATGGTCTCTCCACCACC ACCTCCAAAGGTCGTTGTTCCACCAAATCTCGGCTTCTCATACTCATCGCCACCTCCACCAACGTTGCCAGGATACTAA
AA sequence Show only first row Show all	>Potri.014G036700.2 pacid=42762965 polypeptide=Potri.014G036700.2.p locus=Potri.014G036700 ID=Potri.014G036700.2.v4.1 annot-version=v4.1 MQASTCFLVICLLLLSSFSSFSVALSHSEASFIARRQPLSLKKNVNLPDYFELKIELNITFPNPRLRKAYIALQAWKKAIRSDPFNITGNWEGLRVCDYN GVFCAPALDDPKQNVVAGIDLNHFDIVGYLPVELGLLTDIALFHINSNRFSGIIPKSFSRLTLLHELDVSNNRLVGPFPEVVISLPSLKYLDIRYNDFEG GLPPEVFEKDLDALFLNNNRFTSTIPETLGSSPASVVVIANNKLTGCIPSSIGKMGSTLNEFVFLNNSLSGCLPSEIGKLGNATVLDVGSNSFSGVLPRC FKGLSQVERLDVSHNLLTGFVPEGICKLPNLVNFTFSYNYFNGEAQACSPPKRKDITMDDTSNCLPDRPKQKSPKICHPVVSKPVDCNKAMCGGSPSSSS LPKPPPQPSPSPKAHPPKVPKPAPCPPKLKLHPKPAPAPAPAPTDDHNEESTISHSPSSPPPLVYSPPPPAYSSPPTAHLAPPLVHSPLPPVHSPPTAAP VPAPAPADNPSDKSPVDHFLSSPPPLIPSPPPPVHSPPPPIHSPPPPVHSPPPPVHSPPPPMVSPPPPPKVVVPPNLGFSYSSPPPPTLPGY

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G15880			Leucine-rich repeat (LRR) fami...		Potri.014G036700 [exp]	0	1
AT3G06130			Heavy metal transport/detoxifi...		Potri.008G202800 [exp]	2.23	0.8451
AT5G52860		ABCG8	ATP-binding cassette G8, ABC-2...		Potri.015G027600 [exp]	4.24	0.7684
AT5G55250		AtIAMT1, IAMT1	IAA carboxylmethyltransferase ...		Potri.001G359000 [exp]	11.22	0.7392	IAMT1
AT2G30933			Carbohydrate-binding X8 domain...		Potri.005G003500 [exp]	12.96	0.7400
AT1G78700	BZR	BEH4	BES1/BZR1 homolog 4 (.1)		Potri.011G071800 [exp]	29.66	0.7035
AT4G38430		ATROPGEF1, ROPG...	rho guanyl-nucleotide exchange...		Potri.004G179742 [exp]	30.39	0.7040
AT5G13140			Pollen Ole e 1 allergen and ex...		Potri.003G167100 [exp]	36.78	0.6931
AT4G03390		SRF3	STRUBBELIG-receptor family 3 (...		Potri.019G103900 [exp]	42.23	0.7385
AT1G47740			PPPDE putative thiol peptidase...		Potri.009G113168 [exp]	54.31	0.7320
AT1G65920			Regulator of chromosome conden...		Potri.017G139600 [exp]	58.36	0.6986

Compare expression of checked genes

Potri.014G036700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.