Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G18990 92 / 4e-20 B3 REM39, VRN1 REDUCED VERNALIZATION RESPONSE 1, REPRODUCTIVE MERISTEM 39, AP2/B3-like transcriptional factor family protein (.1) AT4G33280 86 / 6e-18 B3 REM16 AP2/B3-like transcriptional factor family protein (.1) AT4G34400 86 / 8e-18 B3 AP2/B3-like transcriptional factor family protein (.1) AT5G66980 71 / 4e-13 B3 AP2/B3-like transcriptional factor family protein (.1) AT3G06220 67 / 7e-13 B3 REM21 AP2/B3-like transcriptional factor family protein (.1) AT4G01580 66 / 3e-12 B3 AP2/B3-like transcriptional factor family protein (.1) AT3G53310 67 / 6e-12 B3 REM20 AP2/B3-like transcriptional factor family protein (.1) AT5G42700 64 / 2e-11 B3 AP2/B3-like transcriptional factor family protein (.1) AT3G18960 63 / 6e-11 B3 AP2/B3-like transcriptional factor family protein (.1) AT1G16640 60 / 1e-10 B3 AP2/B3-like transcriptional factor family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G036900 [exp] 115 / 5e-28 AT4G33280 256 / 5e-83 AP2/B3-like transcriptional factor family protein (.1) Potri.002G129800 [exp] 107 / 1e-24 AT4G33280 159 / 9e-45 AP2/B3-like transcriptional factor family protein (.1) Potri.002G129900 [exp] 102 / 2e-23 AT4G33280 237 / 9e-76 AP2/B3-like transcriptional factor family protein (.1) Potri.010G191500 [exp] 102 / 3e-23 AT3G18990 189 / 5e-57 REDUCED VERNALIZATION RESPONSE 1, REPRODUCTIVE MERISTEM 39, AP2/B3-like transcriptional factor family protein (.1) Potri.004G147200 [exp] 100 / 1e-22 AT1G49480 110 / 5e-28 related to vernalization1 1 (.1) Potri.009G108500 [exp] 91 / 2e-19 AT3G18990 395 / 2e-137 REDUCED VERNALIZATION RESPONSE 1, REPRODUCTIVE MERISTEM 39, AP2/B3-like transcriptional factor family protein (.1) Potri.004G230100 [exp] 85 / 5e-17 AT3G18990 161 / 1e-44 REDUCED VERNALIZATION RESPONSE 1, REPRODUCTIVE MERISTEM 39, AP2/B3-like transcriptional factor family protein (.1) Potri.004G146900 [exp] 73 / 1e-13 AT3G18990 353 / 6e-121 REDUCED VERNALIZATION RESPONSE 1, REPRODUCTIVE MERISTEM 39, AP2/B3-like transcriptional factor family protein (.1) Potri.009G103400 [exp] 65 / 7e-11 AT3G19184 120 / 5e-31 AP2/B3-like transcriptional factor family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10032748 [exp] 523 / 1e-180 AT5G42700 65 / 9e-12 AP2/B3-like transcriptional factor family protein (.1) Lus10016285 [exp] 95 / 2e-20 AT4G33280 139 / 3e-37 AP2/B3-like transcriptional factor family protein (.1) Lus10032873 [exp] 89 / 2e-18 AT4G33280 129 / 1e-33 AP2/B3-like transcriptional factor family protein (.1) Lus10023691 [exp] 88 / 3e-18 AT4G33280 192 / 4e-57 AP2/B3-like transcriptional factor family protein (.1) Lus10032098 [exp] 88 / 7e-18 AT3G19184 130 / 7e-34 AP2/B3-like transcriptional factor family protein (.1) Lus10012041 [exp] 82 / 2e-16 AT3G18990 388 / 8e-135 REDUCED VERNALIZATION RESPONSE 1, REPRODUCTIVE MERISTEM 39, AP2/B3-like transcriptional factor family protein (.1) Lus10032871 [exp] 81 / 6e-16 AT4G33280 152 / 1e-42 AP2/B3-like transcriptional factor family protein (.1) Lus10016286 [exp] 78 / 1e-15 AT4G33280 166 / 7e-49 AP2/B3-like transcriptional factor family protein (.1) Lus10023844 [exp] 76 / 2e-15 AT3G18990 179 / 1e-55 REDUCED VERNALIZATION RESPONSE 1, REPRODUCTIVE MERISTEM 39, AP2/B3-like transcriptional factor family protein (.1) Lus10009688 [exp] 77 / 8e-15 AT3G18990 113 / 2e-28 REDUCED VERNALIZATION RESPONSE 1, REPRODUCTIVE MERISTEM 39, AP2/B3-like transcriptional factor family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0405 [poplar] [flax] DNA_b-psBarrel PF02362 [poplar] [flax] B3 B3 DNA binding domain
Representative CDS sequence Show only first row Show all	>Potri.014G036800.3 pacid=42763818 polypeptide=Potri.014G036800.3.p locus=Potri.014G036800 ID=Potri.014G036800.3.v4.1 annot-version=v4.1 ATGACCAAAGAGAATCAATCGGAGAAGATGGTGAATGTTGTCAGGCGTCCATGCTTCTTTGTGATTTTCTCTTCTAATTTAAGCTCAGAGCGACTGAGAA TCCCTGTCAGTTTCATCAAGCATATGGAAGGGAAAACGCCGGGATTAGTTTCTTTGTTGGGCCCTAGTGGGGATGTTTGGACAGCTGACTTAACTCAGGA GAATGACGATGTGTTATTCAGTAATGGGTGGTCGGAATTTGTGAGAGATCATTTCTTGGAATGCGGTGACCTTTTGGTTTTTAGGTATCATGGCGAGTTG TGTTTCTCTGTGCAAGTGTTTGATCAAAGTGCGTGTGAGAAAGAGGCTGCGTTTCATTCCAAATGCAGCCAAGGTTGTAGTGAATTTTGTGGAAGTACAG GGAAGAAGAGAGAAAGAGAGGAGGAGGCTGCATCATTAGAGAAAGATTTTGTTTGTGCACGGAAAAAGGTTAGAGAGGGCTCTTCTGAATTCCATTCAGC ATACATAGAAAAGAACCGGGAAGCTCATATCAGCGCATGTGATGTGGGAGGGTGCCAGCATGATGGGGTCCTCACAACTGAAGAAAGTTTATCTCGTGAA ACAAATCAATGTGGGAATCCAGCCAATTGTTTTGCCACTCCCTCTCAATCAAAAGCATGCTCTGAAAAGCAAGAGGTACCCATCTGGAAAAGATTTGGCA AAGATGATGACTTGAAGCTGCATGACAGAGGTCATATGTCAATTTTTTCAGAACGTGAGAAAAGAGTTGCTGAATCTTTTATCTCTTGCTTTCCGTACTT CGTGAGGATCATGAAACGGTTTAACGTCAGTGGTTCATACACTCTGAATATACCATATCAATTTTCAATGGCACATCTTCCTAATTGCAGAACAGAAATT ATCCTTCGTACTATCAAAGGAGCGTGTTGGAGTGTGAATTCTGTACCAGCTACAAGAGTGCATACAAGCCATACCTTATGTGGAGGATGGATGGCCTTTG TTCGTAGCAATGACATCAATGTGGGAGATGTTTGTATTTTTGAACTTGTGCGCAAATATGAATTGCGTGTTTTTATTCTTCGAGTTGGAAAGGAGGGCCC AGATATGGAAACTGGAAAAGTAGTTTCTAACGGGGAAAACACTGGGTGTCATGCCATTGCACATAAAACTGAAAGTTTTCCAAAGAAATCGAGAAGGAAC TGCTTGAAGGTCCATTCTAAACTCATTAAAAAAGCAGAAATATGTGATAAAAAAGAGTTTGAGAAGAGTCAAGCAACTGGCATTTTGAGGCATGGAAATG CAACAAAGGATTCTGCCAGTGCTGTGCTCTTCTCTATGTCACAAACTAGAGATGGAAAGAAGCAGGCACCAATTCAGAATGGAAAGGGTGTAGAAGCTGA AGCTGGTCTGAGAAGGTTGGTAGCACTGGATGAAGAAAGAGCAGCCAAGTCCTTTACGTCTGGTTTTCCTAATTTTGTTAGAATCATGAGGAAGTTCAAT GTTAGTGGTTCATATACTTTGAAAATCCCCCACCAGTTTTCAGCAGCATATCTTCCGAACTGTAAGACAGAGGTCATCCTTTGTAATTTACAAGGGCGAT GCTGGACTGTGAATTCTCTCCCAGACTCAAAAGGTAGAGCAGTGCACACTTTTTGTGGAGGGTGGATGGCCTTTGTTCGTGACAACAATATCAAGATAGG GGATATCTGCATGTTTGAGCTTGTTGGCAAGTGTCAAATGCGGGTACAAATATCTGGGGTTGGACATGAAGTGGTCAATCATCAAATTGGAAATCCAGCA TCCAATGACTTACCTCTTCTGGCAGTGCCTCGCAATGATCCTCCCTCATGA
AA sequence Show only first row Show all	>Potri.014G036800.3 pacid=42763818 polypeptide=Potri.014G036800.3.p locus=Potri.014G036800 ID=Potri.014G036800.3.v4.1 annot-version=v4.1 MTKENQSEKMVNVVRRPCFFVIFSSNLSSERLRIPVSFIKHMEGKTPGLVSLLGPSGDVWTADLTQENDDVLFSNGWSEFVRDHFLECGDLLVFRYHGEL CFSVQVFDQSACEKEAAFHSKCSQGCSEFCGSTGKKREREEEAASLEKDFVCARKKVREGSSEFHSAYIEKNREAHISACDVGGCQHDGVLTTEESLSRE TNQCGNPANCFATPSQSKACSEKQEVPIWKRFGKDDDLKLHDRGHMSIFSEREKRVAESFISCFPYFVRIMKRFNVSGSYTLNIPYQFSMAHLPNCRTEI ILRTIKGACWSVNSVPATRVHTSHTLCGGWMAFVRSNDINVGDVCIFELVRKYELRVFILRVGKEGPDMETGKVVSNGENTGCHAIAHKTESFPKKSRRN CLKVHSKLIKKAEICDKKEFEKSQATGILRHGNATKDSASAVLFSMSQTRDGKKQAPIQNGKGVEAEAGLRRLVALDEERAAKSFTSGFPNFVRIMRKFN VSGSYTLKIPHQFSAAYLPNCKTEVILCNLQGRCWTVNSLPDSKGRAVHTFCGGWMAFVRDNNIKIGDICMFELVGKCQMRVQISGVGHEVVNHQIGNPA SNDLPLLAVPRNDPPS

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G18990	B3	REM39, VRN1	REDUCED VERNALIZATION RESPONSE...		Potri.014G036800 [exp]	0	1
AT2G44900		ARABIDILLO-1, A...	F-box Armadillo protein 1, ARA...		Potri.002G137100 [exp]	1.00	0.8852
					Potri.005G156500 [exp]	5.91	0.8346
AT4G35520		MLH3, ATMLH3	MUTL protein homolog 3 (.1)		Potri.005G101900 [exp]	6.16	0.8573
AT3G17310		DRM3, AtDRM3	domains rearranged methyltrans...		Potri.010G152200 [exp]	6.24	0.8442
AT2G14170		ALDH6B2	aldehyde dehydrogenase 6B2 (....		Potri.009G078700 [exp]	8.12	0.7975
AT1G19485			Transducin/WD40 repeat-like su...		Potri.006G036601 [exp]	10.95	0.8337
					Potri.013G034600 [exp]	11.83	0.8101
AT3G50430			unknown protein		Potri.005G133500 [exp]	15.49	0.8223
AT5G25270			Ubiquitin-like superfamily pro...		Potri.018G115500 [exp]	16.43	0.7868
AT5G47020			unknown protein		Potri.001G148300 [exp]	16.73	0.7954

Compare expression of checked genes

Potri.014G036800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.