Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G33280 255 / 7e-83 B3 REM16 AP2/B3-like transcriptional factor family protein (.1) AT3G18990 115 / 3e-29 B3 REM39, VRN1 REDUCED VERNALIZATION RESPONSE 1, REPRODUCTIVE MERISTEM 39, AP2/B3-like transcriptional factor family protein (.1) AT1G49480 73 / 7e-15 B3 REM19, RTV1 related to vernalization1 1 (.1) AT4G34400 74 / 2e-14 B3 AP2/B3-like transcriptional factor family protein (.1) AT5G66980 61 / 4e-10 B3 AP2/B3-like transcriptional factor family protein (.1) AT3G06220 57 / 1e-09 B3 REM21 AP2/B3-like transcriptional factor family protein (.1) AT4G01580 57 / 2e-09 B3 AP2/B3-like transcriptional factor family protein (.1) AT3G18960 57 / 3e-09 B3 AP2/B3-like transcriptional factor family protein (.1) AT4G31640 56 / 1e-08 B3 REM5 transcriptional factor B3 family protein (.1) AT3G06160 56 / 1e-08 B3 AP2/B3-like transcriptional factor family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G129900 [exp] 619 / 0 AT4G33280 237 / 9e-76 AP2/B3-like transcriptional factor family protein (.1) Potri.002G129800 [exp] 375 / 2e-128 AT4G33280 159 / 9e-45 AP2/B3-like transcriptional factor family protein (.1) Potri.014G036800 [exp] 116 / 1e-28 AT3G18990 92 / 3e-20 REDUCED VERNALIZATION RESPONSE 1, REPRODUCTIVE MERISTEM 39, AP2/B3-like transcriptional factor family protein (.1) Potri.004G147000 [exp] 100 / 2e-23 AT3G18990 258 / 3e-83 REDUCED VERNALIZATION RESPONSE 1, REPRODUCTIVE MERISTEM 39, AP2/B3-like transcriptional factor family protein (.1) Potri.010G191500 [exp] 94 / 2e-21 AT3G18990 189 / 5e-57 REDUCED VERNALIZATION RESPONSE 1, REPRODUCTIVE MERISTEM 39, AP2/B3-like transcriptional factor family protein (.1) Potri.004G146900 [exp] 84 / 8e-18 AT3G18990 353 / 6e-121 REDUCED VERNALIZATION RESPONSE 1, REPRODUCTIVE MERISTEM 39, AP2/B3-like transcriptional factor family protein (.1) Potri.004G147200 [exp] 69 / 9e-13 AT1G49480 110 / 5e-28 related to vernalization1 1 (.1) Potri.009G108500 [exp] 66 / 1e-11 AT3G18990 395 / 2e-137 REDUCED VERNALIZATION RESPONSE 1, REPRODUCTIVE MERISTEM 39, AP2/B3-like transcriptional factor family protein (.1) Potri.007G035700 [exp] 57 / 1e-09 AT4G01580 71 / 4e-15 AP2/B3-like transcriptional factor family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10032871 [exp] 327 / 4e-110 AT4G33280 152 / 1e-42 AP2/B3-like transcriptional factor family protein (.1) Lus10023691 [exp] 229 / 5e-71 AT4G33280 192 / 4e-57 AP2/B3-like transcriptional factor family protein (.1) Lus10016286 [exp] 199 / 2e-61 AT4G33280 166 / 7e-49 AP2/B3-like transcriptional factor family protein (.1) Lus10016285 [exp] 144 / 6e-39 AT4G33280 139 / 3e-37 AP2/B3-like transcriptional factor family protein (.1) Lus10032873 [exp] 140 / 2e-37 AT4G33280 129 / 1e-33 AP2/B3-like transcriptional factor family protein (.1) Lus10012041 [exp] 92 / 2e-20 AT3G18990 388 / 8e-135 REDUCED VERNALIZATION RESPONSE 1, REPRODUCTIVE MERISTEM 39, AP2/B3-like transcriptional factor family protein (.1) Lus10027940 [exp] 89 / 2e-19 AT3G18990 371 / 4e-128 REDUCED VERNALIZATION RESPONSE 1, REPRODUCTIVE MERISTEM 39, AP2/B3-like transcriptional factor family protein (.1) Lus10009688 [exp] 81 / 8e-17 AT3G18990 113 / 2e-28 REDUCED VERNALIZATION RESPONSE 1, REPRODUCTIVE MERISTEM 39, AP2/B3-like transcriptional factor family protein (.1) Lus10036045 [exp] 79 / 2e-16 AT3G18990 110 / 2e-27 REDUCED VERNALIZATION RESPONSE 1, REPRODUCTIVE MERISTEM 39, AP2/B3-like transcriptional factor family protein (.1) Lus10016777 [exp] 79 / 6e-16 AT3G18990 115 / 3e-29 REDUCED VERNALIZATION RESPONSE 1, REPRODUCTIVE MERISTEM 39, AP2/B3-like transcriptional factor family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0405 [poplar] [flax] DNA_b-psBarrel PF02362 [poplar] [flax] B3 B3 DNA binding domain
Representative CDS sequence Show only first row Show all	>Potri.014G036900.1 pacid=42763363 polypeptide=Potri.014G036900.1.p locus=Potri.014G036900 ID=Potri.014G036900.1.v4.1 annot-version=v4.1 ATGGGGGAAGAAACATGTGAAGATTGCAGAGGCTGGGAAGAGGAACTATACTGGACTCATTTCCAGTGCACCCATTTTTTTCAAATTCTCAGTGCTGGTT TTGATCATCAGCTTCCGATCCCTGAAAAATTTTCTAATCATTTGAAGAACAAACTGCTTGAAAACGTGACTCTTAAAGGTCCTAGTGGCAGCACATGGCA AGTTGAACTGACTACAGATGATAACACCATGTTTTTCAAACATGGTTGGGAAGACTTTGTAAAGGACCATTTTCTGGAGGAAAAGGATTTGTTGATCTTT AAGTACAATGGGGAGTCATATTTTGACGTTCTAATTTTTGATGGACAAAGCTTCTGTGAGAAAGCAGCATCGTATTTTGTCAGAAAATGTGGGCACCGAG AAGGCGACAGTTTTGTCCAAACAAAGAGGAAAGCTGTAGAAGATTCTGTTGAAGTTACCAATGCCTGCCCCCATAATGGTCTTGGAGGCACTCCAGAGAA ATCTGCAGATGGTTACATTTACAAAACTCCTGTAAGAAACAGTGTTGTCTCAAAAGCTATTAACAAAAAGACTCGGAGGGAAGTCAAGTTTAGTAAGCCT ATCCAAACTAGGAAGAGAGTGAGATATGAAGGACCTTCTTCTACTGCCGAGGAAATAGAAACCAAGCCTGATGTCCAGCATATACCTATCGGCACGACAT ATGTATCAAGTAGAAGGATGGTAACAGAGCAAGACAAACTCAATGCATTGCGGTTAGCACAAACAGCACAAACCAATGAGGGCTTCGTTGTGGTTATGAA ACCCACACATGTATACAGGAAATTTTACATGGTAATCCCTTCAGCATGGTCAACTAGACATTTCAGAACCCTGGAAAAAAAAGTCGTGATTCTTCGTGTG AAAGAAAATACATGGAACACCAACTTCTTATATTATAAATCCAAGAACAGTGGAGGGCTTTCTTCAGGGTGGAAGAGTTTTGCTCTGGATAACAATTTAC AGGAGTTCGATGTGTGCCTCTTCGAACCTAGTGGCACAATGAACAACTCTTTTGTCTTGGATGTTAATATCTTCCGTGTTCTCTAG
AA sequence Show only first row Show all	>Potri.014G036900.1 pacid=42763363 polypeptide=Potri.014G036900.1.p locus=Potri.014G036900 ID=Potri.014G036900.1.v4.1 annot-version=v4.1 MGEETCEDCRGWEEELYWTHFQCTHFFQILSAGFDHQLPIPEKFSNHLKNKLLENVTLKGPSGSTWQVELTTDDNTMFFKHGWEDFVKDHFLEEKDLLIF KYNGESYFDVLIFDGQSFCEKAASYFVRKCGHREGDSFVQTKRKAVEDSVEVTNACPHNGLGGTPEKSADGYIYKTPVRNSVVSKAINKKTRREVKFSKP IQTRKRVRYEGPSSTAEEIETKPDVQHIPIGTTYVSSRRMVTEQDKLNALRLAQTAQTNEGFVVVMKPTHVYRKFYMVIPSAWSTRHFRTLEKKVVILRV KENTWNTNFLYYKSKNSGGLSSGWKSFALDNNLQEFDVCLFEPSGTMNNSFVLDVNIFRVL

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G33280	B3	REM16	AP2/B3-like transcriptional fa...		Potri.014G036900 [exp]	0	1
AT1G06330			Heavy metal transport/detoxifi...		Potri.002G005300 [exp]	1.41	0.8594
AT4G02340			alpha/beta-Hydrolases superfam...		Potri.013G134800 [exp]	2.00	0.8185
AT1G21740			Protein of unknown function (D...		Potri.005G108400 [exp]	5.19	0.7953
AT1G65810			P-loop containing nucleoside t...		Potri.004G077650 [exp]	6.32	0.8044
AT1G34010			unknown protein		Potri.003G177200 [exp]	6.32	0.7946
AT4G38210		ATHEXPALPHA1.23...	EXPANSIN 20, expansin A20 (.1)		Potri.004G208300 [exp]	6.92	0.7975
AT1G67265		DVL3, RTFL21	DEVIL 3, ROTUNDIFOLIA like 21 ...		Potri.017G112100 [exp]	8.06	0.7937
AT2G19930			RNA-dependent RNA polymerase f...		Potri.006G164400 [exp]	9.79	0.7825
AT1G65780			P-loop containing nucleoside t...		Potri.017G140200 [exp]	10.24	0.7985
AT3G09110			Protein of unknown function (D...		Potri.010G210800 [exp]	12.00	0.7557

Compare expression of checked genes

Potri.014G036900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.