Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G31940 717 / 0 CYP82C4 "cytochrome P450, family 82, subfamily C, polypeptide 4", cytochrome P450, family 82, subfamily C, polypeptide 4 (.1) AT4G31970 685 / 0 CYP82C2, JAH1 "cytochrome P450, family 82, subfamily C, polypeptide 2", cytochrome P450, family 82, subfamily C, polypeptide 2 (.1) AT4G31950 635 / 0 CYP82C3 "cytochrome P450, family 82, subfamily C, polypeptide 3", cytochrome P450, family 82, subfamily C, polypeptide 3 (.1) AT2G25160 454 / 1e-155 CYP82F1 "cytochrome P450, family 82, subfamily F, polypeptide 1", cytochrome P450, family 82, subfamily F, polypeptide 1 (.1) AT3G25180 417 / 2e-141 CYP82G1 cytochrome P450, family 82, subfamily G, polypeptide 1 (.1.2) AT5G07990 340 / 3e-111 CYP75B1, D501, TT7 TRANSPARENT TESTA 7, CYTOCHROME P450 75B1, Cytochrome P450 superfamily protein (.1) AT4G37370 339 / 4e-111 CYP81D8 "cytochrome P450, family 81, subfamily D, polypeptide 8", cytochrome P450, family 81, subfamily D, polypeptide 8 (.1) AT4G37360 332 / 4e-108 CYP81D2 "cytochrome P450, family 81, subfamily D, polypeptide 2", cytochrome P450, family 81, subfamily D, polypeptide 2 (.1) AT4G37320 327 / 2e-106 CYP81D5 "cytochrome P450, family 81, subfamily D, polypeptide 5", cytochrome P450, family 81, subfamily D, polypeptide 5 (.1) AT4G37340 326 / 8e-106 CYP81D3 "cytochrome P450, family 81, subfamily D, polypeptide 3", cytochrome P450, family 81, subfamily D, polypeptide 3 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G037300 [exp] 952 / 0 AT4G31940 629 / 0.0 "cytochrome P450, family 82, subfamily C, polypeptide 4", cytochrome P450, family 82, subfamily C, polypeptide 4 (.1) Potri.009G108600 [exp] 595 / 0 AT4G31940 555 / 0.0 "cytochrome P450, family 82, subfamily C, polypeptide 4", cytochrome P450, family 82, subfamily C, polypeptide 4 (.1) Potri.016G008500 [exp] 576 / 0 AT4G31940 499 / 2e-173 "cytochrome P450, family 82, subfamily C, polypeptide 4", cytochrome P450, family 82, subfamily C, polypeptide 4 (.1) Potri.014G037900 [exp] 572 / 0 AT4G31970 481 / 2e-166 "cytochrome P450, family 82, subfamily C, polypeptide 2", cytochrome P450, family 82, subfamily C, polypeptide 2 (.1) Potri.014G038100 [exp] 558 / 0 AT4G31940 520 / 0.0 "cytochrome P450, family 82, subfamily C, polypeptide 4", cytochrome P450, family 82, subfamily C, polypeptide 4 (.1) Potri.004G106600 [exp] 551 / 0 AT3G25180 514 / 1e-179 cytochrome P450, family 82, subfamily G, polypeptide 1 (.1.2) Potri.014G038000 [exp] 550 / 0 AT4G31940 514 / 5e-179 "cytochrome P450, family 82, subfamily C, polypeptide 4", cytochrome P450, family 82, subfamily C, polypeptide 4 (.1) Potri.014G038200 [exp] 550 / 0 AT4G31940 501 / 7e-174 "cytochrome P450, family 82, subfamily C, polypeptide 4", cytochrome P450, family 82, subfamily C, polypeptide 4 (.1) Potri.014G037700 [exp] 545 / 0 AT4G31940 508 / 1e-176 "cytochrome P450, family 82, subfamily C, polypeptide 4", cytochrome P450, family 82, subfamily C, polypeptide 4 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10032745 [exp] 603 / 0 AT4G31940 571 / 0.0 "cytochrome P450, family 82, subfamily C, polypeptide 4", cytochrome P450, family 82, subfamily C, polypeptide 4 (.1) Lus10007837 [exp] 598 / 0 AT4G31940 575 / 0.0 "cytochrome P450, family 82, subfamily C, polypeptide 4", cytochrome P450, family 82, subfamily C, polypeptide 4 (.1) Lus10011658 [exp] 511 / 4e-178 AT4G31940 510 / 9e-178 "cytochrome P450, family 82, subfamily C, polypeptide 4", cytochrome P450, family 82, subfamily C, polypeptide 4 (.1) Lus10011657 [exp] 510 / 2e-172 AT4G31940 479 / 3e-160 "cytochrome P450, family 82, subfamily C, polypeptide 4", cytochrome P450, family 82, subfamily C, polypeptide 4 (.1) Lus10035635 [exp] 494 / 5e-171 AT4G31940 470 / 8e-162 "cytochrome P450, family 82, subfamily C, polypeptide 4", cytochrome P450, family 82, subfamily C, polypeptide 4 (.1) Lus10032743 [exp] 491 / 1e-169 AT4G31940 460 / 1e-157 "cytochrome P450, family 82, subfamily C, polypeptide 4", cytochrome P450, family 82, subfamily C, polypeptide 4 (.1) Lus10038200 [exp] 473 / 6e-163 AT4G31940 451 / 2e-154 "cytochrome P450, family 82, subfamily C, polypeptide 4", cytochrome P450, family 82, subfamily C, polypeptide 4 (.1) Lus10025902 [exp] 471 / 4e-162 AT4G31940 449 / 1e-153 "cytochrome P450, family 82, subfamily C, polypeptide 4", cytochrome P450, family 82, subfamily C, polypeptide 4 (.1) Lus10038203 [exp] 471 / 6e-162 AT3G25180 495 / 9e-172 cytochrome P450, family 82, subfamily G, polypeptide 1 (.1.2) Lus10003148 [exp] 468 / 4e-161 AT4G31940 430 / 3e-146 "cytochrome P450, family 82, subfamily C, polypeptide 4", cytochrome P450, family 82, subfamily C, polypeptide 4 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00067 [poplar] [flax] p450 Cytochrome P450
Representative CDS sequence Show only first row Show all	>Potri.014G037500.1 pacid=42763348 polypeptide=Potri.014G037500.1.p locus=Potri.014G037500 ID=Potri.014G037500.1.v4.1 annot-version=v4.1 ATGGATCCTTCTCCTCAATTAATTGCGATTGCTTTGTTTTTTTCATGCATACTTCTCTACAATGCACTGATTAAAAAAAACAGTATTAAAGGTAACCAAA TTAAAGAGGCTCCTGAACCAGCTGGAGCATGGCCAATTATTGGCCATCTACATCTGTTAGGTGGGGGTGATCAGCTTCTATACCGAACTCTTGGAGCAAT GGCTGATAAGCATGGTTCAGCGTTCACTATCCGTCTCGGCAGTCGCCGGGCTTTTGTGGTGAGTAGTTGGGAGGTAGTGAAGGAATGCTTCACAATTAAT GACAAGGCGCTAGCTTCACGTCCGACTACAGTTGCAGCAAAGCATATGGGCTACAACTATGCTGTTTTTGGATTTGCTCCATACAGCTCTTTCTGGCGTG AGATGAGAAAGATCGCAACTCTTGAACTTCTTTCTAACCGACGGCTTGAGATGCTTAAGCATGTTCGAGCTTCTGAAGTTGACATAGGGATAAGGGAACT ATACAATTCGTGGGCTAACAATAGCTCCAGTCCGGTGGTTGTTGAACTTAAACAATGGCTAGAAGACTTGACACTTAATGTGGTCGTCAGAATGGTGGCT GGAAAGCGTTATTTTGGTTCTGCTGCCGCCTCTGATGATGGAGAGGCAAGACGGTGCCAGAAGGCGATTAATCAGTTCTTTCGTCTGATTGGTATTTTTG TGGTTTCAGATGCACTTCCATTTCTTGGGTGGTTAGATTTGCAGGGACATGAAAGGGCAATGAAGAATACAGCCAAAGAGTTGGATGCTATTCTCGAAGG CTGGCTGGATGAACATCGCCAAAGGAGAGTTTCTGCTGGAATCAAGGATGAGGGTGAGCAGGACTTCATCGATGTGATGTTGTCACTTAAGGAGGAAGGC CAACTGTCGAATTTTCAGTATGATGCAAATACCAGCATCAAGTCTACCTGCCTAGCTCTTATCCTTGGTGGTAGTGACACCACAGCAGGCACACTAACCT GGGCCATCTCATTACTTCTGAACAATCGCCACATGTTGAAGAAGGCACAAGAAGAGCTAGACCTCCATGTTGGCAAGGAGCGGCAAGTTGAAGATTCAGA TGTTAAGAATCTTGTTTATCTACAAGCAATCATCAAAGAAACCCTCCGACTATATCCAGCTGGTCCCTTGTTAGGACCCCGAGAAGCAATGGAGGATTGC AAAGTTGCTGGTTACCATGTCCCTGCTGGCACCCGCTTGATAGTAAATGTATGGAAGATTCAAAGGGATCCGAGAGTTTGGACAAATCCATCTGCATTCC TGCCAGAGAGGTTTCTCACTAGCCATGGAGATGTTGATGTTAGAGGCCAGCAATTTGAACTTATTCCTTTTGGTTCTGGTAGGAGGTCCTGTCCAGGTGT GTCGTTTGCACTCCAAGTCCTTCACCTGACACTTGCCCGTCTTCTTCACTCTTTTGAATTGGCTACCCCAATGGACCAGCCTGTTGACTTGACTGAAAGT TCAGGTCTAACCATTCCAAAAGCTACCCCATTAGAGGTTATTCTTACCCCACGCTTACCTCCCAAGCTCTATGGCTATTGA
AA sequence Show only first row Show all	>Potri.014G037500.1 pacid=42763348 polypeptide=Potri.014G037500.1.p locus=Potri.014G037500 ID=Potri.014G037500.1.v4.1 annot-version=v4.1 MDPSPQLIAIALFFSCILLYNALIKKNSIKGNQIKEAPEPAGAWPIIGHLHLLGGGDQLLYRTLGAMADKHGSAFTIRLGSRRAFVVSSWEVVKECFTIN DKALASRPTTVAAKHMGYNYAVFGFAPYSSFWREMRKIATLELLSNRRLEMLKHVRASEVDIGIRELYNSWANNSSSPVVVELKQWLEDLTLNVVVRMVA GKRYFGSAAASDDGEARRCQKAINQFFRLIGIFVVSDALPFLGWLDLQGHERAMKNTAKELDAILEGWLDEHRQRRVSAGIKDEGEQDFIDVMLSLKEEG QLSNFQYDANTSIKSTCLALILGGSDTTAGTLTWAISLLLNNRHMLKKAQEELDLHVGKERQVEDSDVKNLVYLQAIIKETLRLYPAGPLLGPREAMEDC KVAGYHVPAGTRLIVNVWKIQRDPRVWTNPSAFLPERFLTSHGDVDVRGQQFELIPFGSGRRSCPGVSFALQVLHLTLARLLHSFELATPMDQPVDLTES SGLTIPKATPLEVILTPRLPPKLYGY

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G31940		CYP82C4	"cytochrome P450, family 82, s...		Potri.014G037500 [exp]	0	1
AT4G31940		CYP82C4	"cytochrome P450, family 82, s...		Potri.014G037300 [exp]	1.00	0.9870
AT5G52790			CBS domain-containing protein ...		Potri.017G147900 [exp]	4.00	0.7225
AT3G02875		ILR1	IAA-LEUCINE RESISTANT 1, Pepti...		Potri.016G074100 [exp]	12.00	0.7059
					Potri.015G139966 [exp]	14.35	0.7540
					Potri.014G097450 [exp]	25.63	0.7496
AT1G31930		XLG3	extra-large GTP-binding protei...		Potri.019G130200 [exp]	25.80	0.6914
AT1G18530			EF hand calcium-binding protei...		Potri.015G052600 [exp]	34.02	0.7316
					Potri.002G068100 [exp]	49.35	0.6421
AT3G26040			HXXXD-type acyl-transferase fa...		Potri.006G010200 [exp]	52.09	0.6674
AT1G11925			Stigma-specific Stig1 family p...		Potri.011G008804 [exp]	56.68	0.6741

Compare expression of checked genes

Potri.014G037500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.