Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G31940 496 / 7e-172 CYP82C4 "cytochrome P450, family 82, subfamily C, polypeptide 4", cytochrome P450, family 82, subfamily C, polypeptide 4 (.1) AT4G31970 480 / 1e-165 CYP82C2, JAH1 "cytochrome P450, family 82, subfamily C, polypeptide 2", cytochrome P450, family 82, subfamily C, polypeptide 2 (.1) AT4G31950 451 / 1e-154 CYP82C3 "cytochrome P450, family 82, subfamily C, polypeptide 3", cytochrome P450, family 82, subfamily C, polypeptide 3 (.1) AT2G25160 401 / 1e-134 CYP82F1 "cytochrome P450, family 82, subfamily F, polypeptide 1", cytochrome P450, family 82, subfamily F, polypeptide 1 (.1) AT3G25180 384 / 2e-128 CYP82G1 cytochrome P450, family 82, subfamily G, polypeptide 1 (.1.2) AT5G07990 309 / 5e-99 CYP75B1, D501, TT7 TRANSPARENT TESTA 7, CYTOCHROME P450 75B1, Cytochrome P450 superfamily protein (.1) AT4G37320 297 / 7e-95 CYP81D5 "cytochrome P450, family 81, subfamily D, polypeptide 5", cytochrome P450, family 81, subfamily D, polypeptide 5 (.1) AT4G37330 296 / 2e-94 CYP81D4 "cytochrome P450, family 81, subfamily D, polypeptide 4", cytochrome P450, family 81, subfamily D, polypeptide 4 (.1) AT4G37370 290 / 4e-92 CYP81D8 "cytochrome P450, family 81, subfamily D, polypeptide 8", cytochrome P450, family 81, subfamily D, polypeptide 8 (.1) AT4G37360 288 / 4e-91 CYP81D2 "cytochrome P450, family 81, subfamily D, polypeptide 2", cytochrome P450, family 81, subfamily D, polypeptide 2 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G037700 [exp] 1035 / 0 AT4G31940 508 / 1e-176 "cytochrome P450, family 82, subfamily C, polypeptide 4", cytochrome P450, family 82, subfamily C, polypeptide 4 (.1) Potri.014G037400 [exp] 999 / 0 AT4G31940 476 / 4e-164 "cytochrome P450, family 82, subfamily C, polypeptide 4", cytochrome P450, family 82, subfamily C, polypeptide 4 (.1) Potri.014G037600 [exp] 997 / 0 AT4G31940 478 / 7e-165 "cytochrome P450, family 82, subfamily C, polypeptide 4", cytochrome P450, family 82, subfamily C, polypeptide 4 (.1) Potri.014G038100 [exp] 618 / 0 AT4G31940 520 / 0.0 "cytochrome P450, family 82, subfamily C, polypeptide 4", cytochrome P450, family 82, subfamily C, polypeptide 4 (.1) Potri.014G038000 [exp] 613 / 0 AT4G31940 514 / 5e-179 "cytochrome P450, family 82, subfamily C, polypeptide 4", cytochrome P450, family 82, subfamily C, polypeptide 4 (.1) Potri.014G038200 [exp] 605 / 0 AT4G31940 501 / 7e-174 "cytochrome P450, family 82, subfamily C, polypeptide 4", cytochrome P450, family 82, subfamily C, polypeptide 4 (.1) Potri.014G037500 [exp] 562 / 0 AT4G31940 717 / 0.0 "cytochrome P450, family 82, subfamily C, polypeptide 4", cytochrome P450, family 82, subfamily C, polypeptide 4 (.1) Potri.014G037900 [exp] 519 / 0 AT4G31970 481 / 2e-166 "cytochrome P450, family 82, subfamily C, polypeptide 2", cytochrome P450, family 82, subfamily C, polypeptide 2 (.1) Potri.009G108600 [exp] 512 / 6e-179 AT4G31940 555 / 0.0 "cytochrome P450, family 82, subfamily C, polypeptide 4", cytochrome P450, family 82, subfamily C, polypeptide 4 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10011657 [exp] 587 / 0 AT4G31940 479 / 3e-160 "cytochrome P450, family 82, subfamily C, polypeptide 4", cytochrome P450, family 82, subfamily C, polypeptide 4 (.1) Lus10032743 [exp] 576 / 0 AT4G31940 460 / 1e-157 "cytochrome P450, family 82, subfamily C, polypeptide 4", cytochrome P450, family 82, subfamily C, polypeptide 4 (.1) Lus10035635 [exp] 563 / 0 AT4G31940 470 / 8e-162 "cytochrome P450, family 82, subfamily C, polypeptide 4", cytochrome P450, family 82, subfamily C, polypeptide 4 (.1) Lus10011658 [exp] 463 / 4e-159 AT4G31940 510 / 9e-178 "cytochrome P450, family 82, subfamily C, polypeptide 4", cytochrome P450, family 82, subfamily C, polypeptide 4 (.1) Lus10032745 [exp] 456 / 2e-156 AT4G31940 571 / 0.0 "cytochrome P450, family 82, subfamily C, polypeptide 4", cytochrome P450, family 82, subfamily C, polypeptide 4 (.1) Lus10007837 [exp] 451 / 4e-154 AT4G31940 575 / 0.0 "cytochrome P450, family 82, subfamily C, polypeptide 4", cytochrome P450, family 82, subfamily C, polypeptide 4 (.1) Lus10010758 [exp] 446 / 1e-153 AT4G31970 346 / 1e-114 "cytochrome P450, family 82, subfamily C, polypeptide 2", cytochrome P450, family 82, subfamily C, polypeptide 2 (.1) Lus10038200 [exp] 423 / 2e-143 AT4G31940 451 / 2e-154 "cytochrome P450, family 82, subfamily C, polypeptide 4", cytochrome P450, family 82, subfamily C, polypeptide 4 (.1) Lus10025902 [exp] 423 / 2e-143 AT4G31940 449 / 1e-153 "cytochrome P450, family 82, subfamily C, polypeptide 4", cytochrome P450, family 82, subfamily C, polypeptide 4 (.1) Lus10025901 [exp] 417 / 1e-140 AT4G31940 426 / 2e-144 "cytochrome P450, family 82, subfamily C, polypeptide 4", cytochrome P450, family 82, subfamily C, polypeptide 4 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00067 [poplar] [flax] p450 Cytochrome P450
Representative CDS sequence Show only first row Show all	>Potri.014G037800.1 pacid=42762974 polypeptide=Potri.014G037800.1.p locus=Potri.014G037800 ID=Potri.014G037800.1.v4.1 annot-version=v4.1 ATGGATTTCCCCTTTCAGTTCTCAGCAACTGCTGTACTTATTCTGTTTGCCTTTATTACGCCCTCGATCTACTATTTGTTTCGGATTCCAGGAAAGGAGA ACAAGAAGAGAGCACCGCCGGAAGCGGCAGGTGCTTGGCCCCTTATTGGCCATCTCCATCTACTAGGAGGCTCACAACCACCCCATATAACGTTGGGAAA CTTGGCTGACAAGTATGGTCCGATATTCACCGTGAAGCTTGAAGTCCATCGAACTTTGATAGTGAGTAACTGGGAGATGGCCAAGGAGTGTCTAAGGACC AATGACAAAGCTTTCGCTACTCGACCTAAAACTCTTGCAATGGATATCTTGGGCTACAATTACAGCATGCTTGGTTTTAGCCCCTACGGAACTTATTGGC GTCTGATACGCAAGATAGTCACTCTTGAGGTTCTCTCTAATCATCGACTGGAGATGTTCACACATGTTCGAGAGGATGAGGTAAGGGATGCTATAGGAGC GTTATACCAGCAATGGATCGGGAACAAAAGTAATTCACAAAAGCTTGTTCTTTTGGTGGAGATGAAGAGATGGTTTAGTGACATAACTTTAAACGTTATA TTGAAGATAATTGTTAGCAAGCGATATGTGGATTATGTAAGCCGTGGAGAGGAAAAGCCGAGCCATGAATGGGGAGATTCAATAAGAACATTTTTAGAAT TGGCAGGTATGTTTGTAGTGTCCGACGCGCTTCCATTTTTAAGATGGTTGGATTTGGGAGGAGTTGAGAAGGCAATGAAAAGGACATCAAAAAATATAGA CCGTGCAGTTGAAAAATGGTTAGAAGAGCACAAGCAGAAGAAAGCTTCTGGGACAGCTAAGGGAGAAGAAGATTTCATGGATTTGATGCTGTCCGTTTTG GATGATGGTAAAGAGCTTTCAAATCGCAGTGCTGATACCATCAATAAGGCTACATGTCTGACTCTTGTTCTAGCAGCAGCAGACACTACATCAGTTACAT TAACTTGGACTCTCTCTTTACTACTAAACAATCGCGAGGTCTTAAAGAAAGCACAAGATGAACTAGACATCCATGTTGGTAGAGAAAGGCAAGTAAAGGA GTCTGACATGAAAAACTTGGTCTACTTACAAGCTATTATCAAGGAAACCTTTCGTTTATATCCCGCTGCACCACTGTCTGTACCCCATGAATCCATGGAG GAATGTACCGTAGGTGGCTACCAAATTCCTGCTGGCACGCGCCTATTCACAAATCTCTCAAAGATTCACCGAGATCCACAAGTGTGGTCGGACCCTGATG AGTTTCAACCAGAAAGGTTTCTGACTACTCACAAGGATTGTGATTTTCGAGGCCAACATTTTGAGTTGATTCCATTTGGTAGCGGAAGAAGAATGTGCCC TGGAGTCTCGTTTGCCCTTCAAGTCGTGAACCTTGCACTCGCTACTTTGCTGCATGGGTTCGACATTGAGACTCTGGATGATGCACCGATTGATATGACT GAAACCGGTGGAATAACCAACATCAAAGCCACACCACTAGAAGCCCTTCTCACTCCTCGTCTTTCTCCTGGCTTGTATGATCTGCAATGA
AA sequence Show only first row Show all	>Potri.014G037800.1 pacid=42762974 polypeptide=Potri.014G037800.1.p locus=Potri.014G037800 ID=Potri.014G037800.1.v4.1 annot-version=v4.1 MDFPFQFSATAVLILFAFITPSIYYLFRIPGKENKKRAPPEAAGAWPLIGHLHLLGGSQPPHITLGNLADKYGPIFTVKLEVHRTLIVSNWEMAKECLRT NDKAFATRPKTLAMDILGYNYSMLGFSPYGTYWRLIRKIVTLEVLSNHRLEMFTHVREDEVRDAIGALYQQWIGNKSNSQKLVLLVEMKRWFSDITLNVI LKIIVSKRYVDYVSRGEEKPSHEWGDSIRTFLELAGMFVVSDALPFLRWLDLGGVEKAMKRTSKNIDRAVEKWLEEHKQKKASGTAKGEEDFMDLMLSVL DDGKELSNRSADTINKATCLTLVLAAADTTSVTLTWTLSLLLNNREVLKKAQDELDIHVGRERQVKESDMKNLVYLQAIIKETFRLYPAAPLSVPHESME ECTVGGYQIPAGTRLFTNLSKIHRDPQVWSDPDEFQPERFLTTHKDCDFRGQHFELIPFGSGRRMCPGVSFALQVVNLALATLLHGFDIETLDDAPIDMT ETGGITNIKATPLEALLTPRLSPGLYDLQ

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G31940		CYP82C4	"cytochrome P450, family 82, s...		Potri.014G037800 [exp]	0	1
AT4G31940		CYP82C4	"cytochrome P450, family 82, s...		Potri.014G037700 [exp]	1.41	0.9756
AT1G24430			HXXXD-type acyl-transferase fa...		Potri.010G053800 [exp]	6.24	0.9519
AT1G24430			HXXXD-type acyl-transferase fa...		Potri.010G054002 [exp]	7.48	0.9408
					Potri.001G427901 [exp]	14.49	0.9245
AT4G14465	AT-hook	AHL20	AT-hook motif nuclear-localize...		Potri.013G044500 [exp]	18.16	0.9249
AT1G74100		SOT16, ATSOT16,...	CORONATINE INDUCED-7, ARABIDOP...		Potri.011G048100 [exp]	22.80	0.9218
AT2G18360			alpha/beta-Hydrolases superfam...		Potri.007G024400 [exp]	23.04	0.9171
AT4G31940		CYP82C4	"cytochrome P450, family 82, s...		Potri.014G037600 [exp]	23.66	0.8119
AT2G43000	NAC	ANAC042, JUB1, ...	NAC domain containing protein ...		Potri.002G057200 [exp]	23.87	0.9122
AT2G29150			NAD(P)-binding Rossmann-fold s...		Potri.006G089800 [exp]	24.53	0.9233

Compare expression of checked genes

Potri.014G037800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.