Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G31940 514 / 5e-179 CYP82C4 "cytochrome P450, family 82, subfamily C, polypeptide 4", cytochrome P450, family 82, subfamily C, polypeptide 4 (.1) AT4G31970 498 / 1e-172 CYP82C2, JAH1 "cytochrome P450, family 82, subfamily C, polypeptide 2", cytochrome P450, family 82, subfamily C, polypeptide 2 (.1) AT4G31950 460 / 7e-158 CYP82C3 "cytochrome P450, family 82, subfamily C, polypeptide 3", cytochrome P450, family 82, subfamily C, polypeptide 3 (.1) AT2G25160 404 / 7e-136 CYP82F1 "cytochrome P450, family 82, subfamily F, polypeptide 1", cytochrome P450, family 82, subfamily F, polypeptide 1 (.1) AT3G25180 401 / 1e-134 CYP82G1 cytochrome P450, family 82, subfamily G, polypeptide 1 (.1.2) AT5G07990 317 / 4e-102 CYP75B1, D501, TT7 TRANSPARENT TESTA 7, CYTOCHROME P450 75B1, Cytochrome P450 superfamily protein (.1) AT4G37400 300 / 1e-95 CYP81F3 "cytochrome P450, family 81, subfamily F, polypeptide 3", cytochrome P450, family 81, subfamily F, polypeptide 3 (.1) AT4G37370 299 / 1e-95 CYP81D8 "cytochrome P450, family 81, subfamily D, polypeptide 8", cytochrome P450, family 81, subfamily D, polypeptide 8 (.1) AT5G67310 293 / 4e-93 CYP81G1 "cytochrome P450, family 81, subfamily G, polypeptide 1", cytochrome P450, family 81, subfamily G, polypeptide 1 (.1) AT4G37430 290 / 1e-91 CYP81F1, CYP91A2 "cytochrome P450, family 91, subfamily A, polypeptide 2", CYTOCHROME P450 MONOOXYGENASE 81F1, cytochrome P450, family 91, subfamily A, polypeptide 2 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G038100 [exp] 1008 / 0 AT4G31940 520 / 0.0 "cytochrome P450, family 82, subfamily C, polypeptide 4", cytochrome P450, family 82, subfamily C, polypeptide 4 (.1) Potri.014G038200 [exp] 995 / 0 AT4G31940 501 / 7e-174 "cytochrome P450, family 82, subfamily C, polypeptide 4", cytochrome P450, family 82, subfamily C, polypeptide 4 (.1) Potri.014G037700 [exp] 613 / 0 AT4G31940 508 / 1e-176 "cytochrome P450, family 82, subfamily C, polypeptide 4", cytochrome P450, family 82, subfamily C, polypeptide 4 (.1) Potri.014G037600 [exp] 610 / 0 AT4G31940 478 / 7e-165 "cytochrome P450, family 82, subfamily C, polypeptide 4", cytochrome P450, family 82, subfamily C, polypeptide 4 (.1) Potri.014G037400 [exp] 607 / 0 AT4G31940 476 / 4e-164 "cytochrome P450, family 82, subfamily C, polypeptide 4", cytochrome P450, family 82, subfamily C, polypeptide 4 (.1) Potri.014G037800 [exp] 605 / 0 AT4G31940 495 / 9e-172 "cytochrome P450, family 82, subfamily C, polypeptide 4", cytochrome P450, family 82, subfamily C, polypeptide 4 (.1) Potri.014G037500 [exp] 561 / 0 AT4G31940 717 / 0.0 "cytochrome P450, family 82, subfamily C, polypeptide 4", cytochrome P450, family 82, subfamily C, polypeptide 4 (.1) Potri.014G037900 [exp] 515 / 3e-179 AT4G31970 481 / 2e-166 "cytochrome P450, family 82, subfamily C, polypeptide 2", cytochrome P450, family 82, subfamily C, polypeptide 2 (.1) Potri.009G108600 [exp] 503 / 3e-175 AT4G31940 555 / 0.0 "cytochrome P450, family 82, subfamily C, polypeptide 4", cytochrome P450, family 82, subfamily C, polypeptide 4 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10011657 [exp] 620 / 0 AT4G31940 479 / 3e-160 "cytochrome P450, family 82, subfamily C, polypeptide 4", cytochrome P450, family 82, subfamily C, polypeptide 4 (.1) Lus10032743 [exp] 596 / 0 AT4G31940 460 / 1e-157 "cytochrome P450, family 82, subfamily C, polypeptide 4", cytochrome P450, family 82, subfamily C, polypeptide 4 (.1) Lus10035635 [exp] 582 / 0 AT4G31940 470 / 8e-162 "cytochrome P450, family 82, subfamily C, polypeptide 4", cytochrome P450, family 82, subfamily C, polypeptide 4 (.1) Lus10032745 [exp] 482 / 2e-166 AT4G31940 571 / 0.0 "cytochrome P450, family 82, subfamily C, polypeptide 4", cytochrome P450, family 82, subfamily C, polypeptide 4 (.1) Lus10007837 [exp] 481 / 3e-166 AT4G31940 575 / 0.0 "cytochrome P450, family 82, subfamily C, polypeptide 4", cytochrome P450, family 82, subfamily C, polypeptide 4 (.1) Lus10011658 [exp] 474 / 3e-163 AT4G31940 510 / 9e-178 "cytochrome P450, family 82, subfamily C, polypeptide 4", cytochrome P450, family 82, subfamily C, polypeptide 4 (.1) Lus10010758 [exp] 452 / 5e-156 AT4G31970 346 / 1e-114 "cytochrome P450, family 82, subfamily C, polypeptide 2", cytochrome P450, family 82, subfamily C, polypeptide 2 (.1) Lus10038203 [exp] 444 / 2e-151 AT3G25180 495 / 9e-172 cytochrome P450, family 82, subfamily G, polypeptide 1 (.1.2) Lus10025902 [exp] 428 / 4e-145 AT4G31940 449 / 1e-153 "cytochrome P450, family 82, subfamily C, polypeptide 4", cytochrome P450, family 82, subfamily C, polypeptide 4 (.1) Lus10038200 [exp] 428 / 5e-145 AT4G31940 451 / 2e-154 "cytochrome P450, family 82, subfamily C, polypeptide 4", cytochrome P450, family 82, subfamily C, polypeptide 4 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00067 [poplar] [flax] p450 Cytochrome P450
Representative CDS sequence Show only first row Show all	>Potri.014G038000.1 pacid=42762490 polypeptide=Potri.014G038000.1.p locus=Potri.014G038000 ID=Potri.014G038000.1.v4.1 annot-version=v4.1 ATGGAGTTTTTTAATCTTCCATTCCTCACCAATAACATGACCTCCAATCCCATGTTTTTCATTTTTATTTTTATCTGTTCAATCTTCTGGATTTCAAGAA AATTTTTAGCAGGCACAGGCAAGAAGAAAGCAGCACCAAAAGCTGGTGGAGCATGGCCTGTGATTGGCCACCTCCATCTGTTAGGAGGGGCGGAACCTCC CCATAAAGTACTGGGCAGCATGGCTGAAAAATATGGACCCATCTTCACAATCAAGATGGGCGTGCACCGAGCTTTGGTAGTAAGCAATTGGGAGACCGCC AAGGAGTGTTTCACCACCCATGATAAAGCCTTTTCTGGTCGTCCGAGAACACTTGCCTCTGAGCTTTTGACCTACGATGGTGCTATGCTGGGGTTTAGCC CATATGGGCCTTATTGGCGTCAAGTCCGCAAAATAACCACGGTTGAGCTTCTATCAAACTACCGGCTAGAGAAGCTGAAAGATGTACGAGAGAGCGAGGT AAGGGCATTTCTGAAAGAGTTGTACAAGTTATGGGACGAGAATAGAGGTAGTGCATCAAAATCAAAAAGTAATCTGGTATTGGTGGAAATGAAAAAATGG TTTGGAGATCTAACATTAAACATCGTTCTTAGAACAATTGTTGGAAAAACTGTGGGATATATCACAAACGTTGAGGATGAGGAGAGTGTGGAAGGATGGA AAAAGGGATTGAAGGATTTTTTTCATTGGACAAGGGTGTTTTCGGTGTCTGATGCGCTACCATTTTTAAGGTTTTTGGATCTTGGGGGGCATGGGGAGGC TATGAAGAAGACTGCAAAAGAACTGGACCTTGTTGTTGAAGATTGGCTCAAAGAACACAAGCGAAAAAGAGCTGCTGGAATTGTTAAGGGTAAGGAGGAC TTCATGGATGTGATGCTAGATGTTTTCGATAATGATGCAGAAGCAGTTCAAGGCGGAGATTCTGATACCACCATCAAAGCTACATCCCTGGCCCTTATTC TGGCAGCCTCAGACACAACAGCAGTGACTTTGATATGGGCTCTCTCTTTACTAGTCAATAATCCTAATGTACTAAAGAAGGCACAGCTTGAATTAGACAC CCACGTTGGTAAGGAAAGACAAGTGGAAGAATCGGATGTGCAAAATTTGGTCTACCTTAAAGCTGTACTCAAGGAAACGCTCCGTTTATACCCAGCTGCA CCACTCTCGTTACCGCATGAGGCCATTGAGGATTGCACCATAGATGGCTACCATGTTCCGAGAGGGACAAGACTTCTCGTTAATGTTTCGAAGATTCATC GTGATGAAAGGGTGTGGTCCAATCCTAACGAGTTTGATCCGGAAAGATTTCTAACAACTCACAGAGGTTTTGATGTTAGAGGGAAAAACTTCGAGTTTTC TCCGTTTGGAAGTGGCAGAAGAATGTGCCCTGGAGTATCTTTTGCCCTTCATGTCATGGATCTAGCACTGGCTACATTGCTACATGGGTTTGATTTTGCA ACCCCGTCAGGTGAACCAGTTGATATGCACGAGAGCAGTGGATTAACCAACCTCCGAGCAACGCCCCTTGAAGTTCTTCTCAGTCCACGCCTTTCTTCTC GTCTATATGGACATTAA
AA sequence Show only first row Show all	>Potri.014G038000.1 pacid=42762490 polypeptide=Potri.014G038000.1.p locus=Potri.014G038000 ID=Potri.014G038000.1.v4.1 annot-version=v4.1 MEFFNLPFLTNNMTSNPMFFIFIFICSIFWISRKFLAGTGKKKAAPKAGGAWPVIGHLHLLGGAEPPHKVLGSMAEKYGPIFTIKMGVHRALVVSNWETA KECFTTHDKAFSGRPRTLASELLTYDGAMLGFSPYGPYWRQVRKITTVELLSNYRLEKLKDVRESEVRAFLKELYKLWDENRGSASKSKSNLVLVEMKKW FGDLTLNIVLRTIVGKTVGYITNVEDEESVEGWKKGLKDFFHWTRVFSVSDALPFLRFLDLGGHGEAMKKTAKELDLVVEDWLKEHKRKRAAGIVKGKED FMDVMLDVFDNDAEAVQGGDSDTTIKATSLALILAASDTTAVTLIWALSLLVNNPNVLKKAQLELDTHVGKERQVEESDVQNLVYLKAVLKETLRLYPAA PLSLPHEAIEDCTIDGYHVPRGTRLLVNVSKIHRDERVWSNPNEFDPERFLTTHRGFDVRGKNFEFSPFGSGRRMCPGVSFALHVMDLALATLLHGFDFA TPSGEPVDMHESSGLTNLRATPLEVLLSPRLSSRLYGH

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G31940		CYP82C4	"cytochrome P450, family 82, s...		Potri.014G038000 [exp]	0	1
AT4G31940		CYP82C4	"cytochrome P450, family 82, s...		Potri.014G038200 [exp]	1.41	0.9388
AT1G10150		ATPP2-A10	Carbohydrate-binding protein (...		Potri.014G006800 [exp]	2.82	0.8711
AT4G31940		CYP82C4	"cytochrome P450, family 82, s...		Potri.014G038100 [exp]	2.82	0.8895
AT5G13920			GRF zinc finger / Zinc knuckle...		Potri.009G112676 [exp]	4.58	0.8551
AT1G08170			Histone superfamily protein (....		Potri.001G212200 [exp]	5.29	0.8287
AT2G33550	Trihelix		Homeodomain-like superfamily p...		Potri.001G066900 [exp]	5.74	0.8340
AT1G03055			unknown protein		Potri.005G216400 [exp]	6.00	0.8223
AT1G68470			Exostosin family protein (.1)		Potri.001G382200 [exp]	6.24	0.8742
AT2G17220		Kin3	kinase 3, Protein kinase super...		Potri.005G100900 [exp]	6.24	0.8303
AT5G53120		SPMS, SPDS3, AT...	spermidine synthase 3 (.1.2.3....		Potri.015G018900 [exp]	6.92	0.8312

Compare expression of checked genes

Potri.014G038000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.